| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4593882 = | 47 (1.590) | 3 (0.140) +AGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCT |
3/174 | NT | 9.8% | intergenic (+142/+157) | mccA/PP_4068 | methylcrotonyl‑CoA carboxylase biotin‑containing subunit alpha/Cro/CI family transcriptional regulator |
| ? | NC_002947 | = 5557913 | 31 (1.050) | intergenic (‑233/+98) | PP_4888/purA | methyl‑accepting chemotaxis transducer/adenylosuccinate synthetase | |||||
GGGAAATGCGCCAAGGTCTAGCAATGGGGTTTCGTGTGCAGGCCCATTCGCGGGTAAACCCGCTCCTACAACGGCCTGCGCCCAACCATCGTTGTGTGCCCACATAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCCCACAAATGAAAACGCCGCGGCCCTTCTCAGGGCCGCGGCGTCAGATCAGCCTGGAAGGCAGATCAGGCGAACGGGTGACGCAGCACGATGGTCTCGTTGCGGTCCGGG > NC_002947/5557766‑5558056 | gggAAATGCGCCAAGGTCTAGCAATGGGGTTTCGTGTGCAGGCCCATTCGCGGGTAAACCCGCTCCTACAACGGCCTGCGCCCAACCATCGTTGTGTGCCCACATAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGa < 1:458981/150‑1 (MQ=255) gAAATGCGCCAAGGTCTAGCAATGGGGTTTCGTGTGCAGGCCCATTCGCGGGTAAACCCGCTCCTACAACGGCCTGCGCCCAACCATCGTTGTGTGCCCACATAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGa > 1:203321/1‑148 (MQ=255) gAAATGCGCCAAGGTCTAGCAATGGGGTTTCGTGTGCAGGCCCATTCGCGGGTAAACCCGCTCCTACAACGGCCTGCGCCCAACCATCGTTGTGTGCCCACATAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGa < 2:203321/148‑1 (MQ=255) cAAGGTCTAGCAATGGGGTTTCGTGTGCAGGCCCATTCGCGGGTAAACCCGCTCCTACAACGGCCTGCGCCCAACCATCGTTGTGTGCCCACATAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGa < 1:611920/150‑1 (MQ=255) gCAATGGGGTTTCGTGTGCAGGCCCATTCGCGGGTAAACCCGCTCCTACAACGGCCTGCGCCCAACCATCGTTGTGTGCCCACATAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCa < 2:685043/150‑1 (MQ=255) ggTTTCGTGTGCAGGCCCATTCGCGGGTAAACCCGCTCCTACAACGGCCTGCGCCCAACCATCGTTGTGTGCCCACATAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGa > 2:478359/1‑150 (MQ=255) cGTGTGCAGGCCCATTCGCGGGTAAACCCGCTCCTACAACGGCCTGCGCCCAACCATCGTTGTGTGCCCACATAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGc < 2:321046/150‑1 (MQ=255) ccAGTCGCCGGTAAACCCGCTCCTACAACGGCCTGCGCCCAACCATCGTTGTGTGCCCACATAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCCCACAAATGaa < 2:766087/150‑1 (MQ=255) gcgGGTAAACCCGCTCCTACAACGGCCTGCGCCCAACCATCGTTGTGTGCCCACATAGGAGCGGGTTTACCCGTGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCCCACAAATGAAAAcgcc > 2:667992/1‑150 (MQ=255) aaaCCCGCTCCTACAACGGCCTGCGCCCAACCATCGTTGTGTGCCCACATAGGAGCGGGTTTACCCGTGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCCCACAAATGAAAACGCCGCGGcc < 1:667992/150‑1 (MQ=255) aaaCCCGCTCCTACAACGGCCTGCGCCCAACCATCGTTGTGTGCCCACATAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCCCACAAATGa < 1:193339/137‑1 (MQ=255) aaaCCCGCTCCTACAACGGCCTGCGCCCAACCATCGTTGTGTGCCCACATAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCCCACAAATGa > 2:193339/1‑137 (MQ=255) aCCCGCTCCTACAACGGCCTGCGCCCAACCATCGTTGTGTGCCCACATAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCCCACAAATGAAAACGCCGCGGCCCt > 2:176883/1‑150 (MQ=255) cTCCTACAACGGCCTGCGCCCAACCATCGTTGTGTGCCCACATAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCCCACAAATGAAAACGCCGCGGCCCTTCTCa < 2:429726/150‑1 (MQ=255) ccTACAACGGCCTGCGCCCAACCATCGTTGTGTGCCCACATAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCCCACAAATGAAAACGCCGCGGCCCTTCTCAgg < 2:486064/150‑1 (MQ=255) tACAACGGCCTGCGCCCAACCATCGTTGTGTGCCCACATAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCCCACAAATGAAAACGCCGCGGCCCTTCTCAGGGc > 2:777146/1‑150 (MQ=255) cccAACCATCGTTGTGTGCCCACATAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCCCACAAATGAAAACGCCGCGGCCCTTCTCAGGGCCGCGGCGTCAGATc > 1:147261/1‑150 (MQ=255) cAACCATCGTTGTGTGCCCACATAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGata < 2:573505/81‑1 (MQ=255) cAACCATCGTTGTGTGCCCACATAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGata > 1:573505/1‑81 (MQ=255) cATCGTTGTGTGCCCACATAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCCCACAAATGAAAACGCCGCGGCCCTTCTCAGGGCCGCGGCGTCTGATCTGCCtt > 1:790201/1‑149 (MQ=255) ttGTGTGCCCACATAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCCCACAAATGAAAACGCCGCGGCCCTTCTCAGGGc < 2:319809/125‑1 (MQ=255) ttGTGTGCCCACATAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCCCACAAATGAAAACGCCGCGGCCCTTCTCAGGGc > 1:319809/1‑125 (MQ=255) tgCCCACATAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCCCACAAATGAAAACGCCGCGGCCCTTCTCAGGGCCGCGGCGTCAGATCAGCCTGGAAGGCAGAt > 1:260271/1‑150 (MQ=255) ccACATAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCCCACAAATGAAAACGCCGCGGCCCTTCTCAGGGCCGCGGCGTCAGATCAGCCTGGAAGGCAGATCAg < 2:260271/150‑1 (MQ=255) aTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCCCACAAATGAAAACGCCGCGGCCCTTCTCAGGGCCGCGGCGTCAGATCAGCCTGGAAGGCAGATCAGGCGa > 2:60839/1‑150 (MQ=255) gAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGagcgacgggtagagattggccagcaggcccggccctttcgcgggtaaacccgctcctacatccgatcgggggcggacccatgttgctgcttaggcgcaggccgcgacta < 1:398190‑M2/150‑110 (MQ=255) gggTCTACACTCGAAGACGGTCGCGGCGGCAACGGGGGATTACCGGTGGATATTGGCCAGCACAGACATTCCCACAAATGAAACCGCCGCGGCCCTTCTCAGCGCCGCGGCGTCAGATCAGCCTGGAAGGCAGATCAGGCGAACGGGTGa < 2:300978/150‑1 (MQ=255) gTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGagcgacggg < 2:637185‑M2/44‑10 (MQ=255) gTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGagcgacggg > 1:637185‑M2/1‑35 (MQ=255) aCCCGCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCCCACAAATGAAAACGCCGCGGCCCTTCTCAGGGCCGCGGCGTCAGATCAGCCTGGAAGGCAGATCAGGc < 2:263091/134‑1 (MQ=255) aCCCGCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCCCACAAATGAAAACGCCGCGGCCCTTCTCAGGGCCGCGGCGTCAGATCAGCCTGGAAGGCAGATCAGGc > 1:263091/1‑134 (MQ=255) ccGCGAATACGGTAGCGGCGGCAACGGTGagcgacgggtagagattggccagcaggcccggccctttcgc > 2:796607‑M2/1‑29 (MQ=255) ccGCGAATACGGTAGCGGCGGCAACGGTGagcgacgggtagagattggccagcaggcccggccctttcgc < 1:796607‑M2/70‑42 (MQ=255) ccGCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCCCACAAATGAAAACGCCGCGGCCCTTCTCAGGGCCGCGGCGTCAGAt < 2:16545/110‑1 (MQ=255) ccGCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCCCACAAATGAAAACGCCGCGGCCCTTCTCAGGGCCGCGGCGTCAGAt > 1:16545/1‑110 (MQ=255) cgcgAATACGGTAGCGGCGGCAACGGTGagcgacgggtagagattggccagcaggcccggccctttcgcgggtaaacccgctcctacatccgatcggg < 2:509482‑M2/98‑71 (MQ=255) cgcgAATACGGTAGCGGCGGCAACGGTGagcgacgggtagagattggccagcaggcccggccctttcgcgggtaaacccgctcctacatccgatcggg > 1:509482‑M2/1‑28 (MQ=255) gTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCCCACAAATGAAAACGCCGCGGCCCTTCTCAgg > 1:735165/1‑84 (MQ=255) gTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCCCACAAATGAAAACGCCGCGGCCCTTCTCAgg < 2:735165/84‑1 (MQ=255) ggcggcAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCCCACAAATGAAAACGCCGCGGCCCTTCTCAGGGCCGCGGCGTCAGATCAGCCTGGAAGGCAGATCAGGCGAACGGGTGACGCAGCACGATGGTCTCGTTGCgg < 1:478359/150‑1 (MQ=255) aaCGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCCCACAAATGAAAACGCCGCGGCCCTTCTCAGGGCCGCGGCGTCAGATCAGCCTGGAAGGCAGATCAGGCGAACGGGTGACGCAGCACGATGGTCTCGTTGCGGTCCggg > 2:734174/1‑150 (MQ=255) | GGGAAATGCGCCAAGGTCTAGCAATGGGGTTTCGTGTGCAGGCCCATTCGCGGGTAAACCCGCTCCTACAACGGCCTGCGCCCAACCATCGTTGTGTGCCCACATAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCCCACAAATGAAAACGCCGCGGCCCTTCTCAGGGCCGCGGCGTCAGATCAGCCTGGAAGGCAGATCAGGCGAACGGGTGACGCAGCACGATGGTCTCGTTGCGGTCCGGG > NC_002947/5557766‑5558056 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |