New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4593882 =	47 (1.590)	3 (0.140) +AGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCT	3/174	NT	9.8%	intergenic (+142/+157)	mccA/PP_4068	methylcrotonyl‑CoA carboxylase biotin‑containing subunit alpha/Cro/CI family transcriptional regulator
	?	NC_002947	= 5557913	31 (1.050)					intergenic (‑233/+98)	PP_4888/purA	methyl‑accepting chemotaxis transducer/adenylosuccinate synthetase

CCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGAT‑CGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTAC  >  NC_002947/4593754‑4594028                                                                                                                                 |                                                                                                                                                    ccGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTTTACCCGcgaata                                                                                                                                >  2:463387/1‑145 (MQ=255) ccGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTTTACCCGcgaata                                                                                                                                <  1:463387/150‑6 (MQ=255)           gCCCTAACGCAACACAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGTGTAAACCCGCTCCTACATCCGAT‑Cg                                                                                                                     >  2:341708/1‑150 (MQ=255)            cccTAACGCAACACAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGAT‑Cgg                                                                                                                    <  2:779387/150‑1 (MQ=255)            cccTAACGCAACACAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGAT‑Cgg                                                                                                                    <  1:680108/150‑1 (MQ=255)             ccTAACGCAACACAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGAT‑Cggg                                                                                                                   >  1:649191/1‑150 (MQ=255)                 aCGCAACACAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCCGGCTCTACCCGTCGCTCACCGTTGCCGCCGCTAGCGTATTCGCGGGTAAACCCGCTCCTACATCCGAT‑CGGGGGTg                                                                                                               >  1:178776/1‑150 (MQ=255)                 aCGCAACACAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGAT‑CGGGGGTg                                                                                                               >  2:356513/1‑150 (MQ=255)                   gCAACACAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACGCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGAT‑CGGGGGTGGa                                                                                                             <  1:600038/150‑1 (MQ=255)                   gCAACACAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTCTTCGCGGGTAAACCCGCGCCTACAGCCGAT‑CGGGGGTGGa                                                                                                             >  2:86641/1‑150 (MQ=255)                     aaCACAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGAT‑CGGGGGTGGaca                                                                                                           >  2:514005/1‑150 (MQ=255)                      acacAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGAT‑CGGGGGTGGacac                                                                                                          >  2:639115/1‑150 (MQ=255)                      acacAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGAT‑CGGGGGTGGacac                                                                                                          <  1:549481/150‑1 (MQ=255)                       cacaAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGAT‑CGGGGGTGGAcaca                                                                                                         >  1:311868/1‑150 (MQ=255)                        acaAGGCCGCGCCTGCCACAGCCCGTAGGAGCGGGTTTAGCCGGGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAGACCCGCTCCTACATCCAAT‑CGGTGGTGGACACAt                                                                                                        >  2:84547/1‑150 (MQ=18)                          aaGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGAT‑CGGGGGTGGACACATGt                                                                                                      >  2:98328/1‑150 (MQ=255)                            ggCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGAT‑CGGGGGTGGACACATGTTg                                                                                                    <  1:86641/150‑1 (MQ=255)                             gccgccCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGAT‑CGGGGGTGGACACATGTTgg                                                                                                   <  1:84547/150‑1 (MQ=255)                              ccgccCCTGCAACAGCCCGTAGGAGCGGGTTTCACTGTGAATGTTCTTGGCCTTCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGAT‑CGGGGGTGGACACATGTTGGt                                                                                                  <  1:574859/150‑1 (MQ=21)                               cgccCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGAT‑CGGGGGTGGACACATGTTGGTg                                                                                                 <  2:245162/150‑1 (MQ=255)                                  cccTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGAT‑CGGGGGTGGACACATGTTGGTGAtt                                                                                              >  1:678461/1‑150 (MQ=255)                                     tGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGAT‑CGGGGGTGGACACATGTTGGTGATTAgg                                                                                           <  1:356513/150‑1 (MQ=255)                                       cAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGAT‑CGGGGGTGGACACATGTTGGTGATTAGgcg                                                                                         >  1:493805/1‑150 (MQ=255)                                        aaCAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGc                                                                                                                                     <  1:322614/106‑1 (MQ=255)                                        aaCAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGc                                                                                                                                     >  2:322614/1‑106 (MQ=255)                                              ccGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGAT‑CGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCcg                                                                                  >  1:374552/1‑150 (MQ=255)                                                gTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGAT‑CGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCcgcg                                                                                >  1:348838/1‑150 (MQ=255)                                                 tAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGAT‑CGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCgt                                                                               <  1:618220/150‑1 (MQ=255)                                                  aGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGAT‑CGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCgtg                                                                              <  2:374552/150‑1 (MQ=255)                                                    gagcgggtttacccgcgaatacggtagcggcggcaacggtgagcgacgggtagagattggccagcaggcccggccctTTCGCGGGTAAACCCGCTCCTACATCCGAT‑CGGGGGCGGACCCATGTTGCTGCTTAGGCGCaggccgcgacta                                                                            <  1:398190‑M1/73‑5 (MQ=255)                                                     aGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGAT‑CGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGAAg                                                                           >  1:398774/1‑150 (MQ=255)                                                      gCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCCCCTACATCCGCT‑CGGGGGTGGCCCCATGTTGGTGATTAGGCGCAGGCCGCGTGTCgg                                                                          >  1:359089/1‑150 (MQ=21)                                                         ggTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGAT‑CGGGGGTGGACACATGTTGGTGATTa                                                                                             >  1:746397/1‑128 (MQ=255)                                                         ggTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGAT‑CGGGGGTGGACACATGTTGGTGATTa                                                                                             <  2:746397/128‑1 (MQ=255)                                                             tACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGAT‑CGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGt                                                                   <  1:514005/150‑1 (MQ=255)                                                               cccGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGAC‑CGGGGGGGGACACATGTAGGTGATTAGGCAGAGGCCGCGTGTAGGAGCGGGttt                                                                 >  2:284785/1‑150 (MQ=21)                                                                ccgcgaatacggtagcggcggcaacggtgagcgacgggtagagattggccagcaggcccggccctTTcgc                                                                                                                                                 <  1:796607‑M1/5‑1 (MQ=255)                                                                ccgcgaatacggtagcggcggcaacggtgagcgacgggtagagattggccagcaggcccggccctTTcgc                                                                                                                                                 >  2:796607‑M1/66‑70 (MQ=255)                                                                ccGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGAT‑CGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTa                                                                >  1:546098/1‑150 (MQ=255)                                                                 cgcgaatacggtagcggcggcaacggtgagcgacgggtagagattggccagcaggcccggccctTTCGCGGGTAAACCCGCTCCTACATCCGAT‑Cggg                                                                                                                   >  1:509482‑M1/65‑98 (MQ=255)                                                                 cgcgaatacggtagcggcggcaacggtgagcgacgggtagagattggccagcaggcccggccctTTCGCGGGTAAACCCGCTCCTACATCCGAT‑Cggg                                                                                                                   <  2:509482‑M1/34‑1 (MQ=255)                                                                 cgcgAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATCCGCGGGTAAACCCGCTCCTACATCCGAT‑CGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTAc                                                               <  2:178776/150‑1 (MQ=255)                                                                         ggccgggccTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGAT‑CGGGGGTGGACCCATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCAGCGaaa                                                       >  1:12236/1‑150 (MQ=255)                                                                                ccTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGAT‑CGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGggccgg                                                <  2:493805/150‑1 (MQ=255)                                                                                         cAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGAT‑CGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTgg                                       >  1:638747/1‑150 (MQ=255)                                                                                              tctACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGAT‑CGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAAc                                  <  2:678461/150‑1 (MQ=255)                                                                                                            aCCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGAT‑CGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACACGCCGtt                    >  1:109014/1‑150 (MQ=255)                                                                                                              cGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGAT‑CGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCa                  >  2:719490/1‑150 (MQ=255)                                                                                                                ttcccgccgCTACCGTATTCGCGGGCAAACCCGCTCCTACATCCGAG‑CGGGGGTGGATACATGTTGGTGATTATGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCAcc                >  2:27744/4‑150 (MQ=25)                                                                                                                ttGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATACGGAGGT‑GACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCAcc                <  1:446643/150‑1 (MQ=255)                                                                                                                       cgcTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGAT‑CGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTAccc                                                             >  2:736337/1‑98 (MQ=255)                                                                                                                       cgcTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGAT‑CGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTAccc                                                             <  1:736337/98‑1 (MQ=255)                                                                                                                            ccGTATTCGCGGGTAAACCCGCTCCTACATCCGAT‑CGGGGATGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCact    >  1:761084/1‑150 (MQ=255)                                                                                                                              gTATTCGCGGGTAAACCCGCTCCTACATCCGAT‑CGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCactac  <  1:98328/150‑1 (MQ=255)                                                                                                                                 |                                                                                                                                                    CCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGAT‑CGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTAC  >  NC_002947/4593754‑4594028

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.