New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4699261	28 (0.950)	4 (0.140)	4/242	NT	12.4%	coding (1473/2655 nt)	kdpD	sensor protein
	?	NC_002947	= 4699296	29 (1.000)					coding (1438/2655 nt)	kdpD	sensor protein

GTTGCGCTCCAGCAAGCACACCTGGGCGTCCTGCCACCCGTCCAGGTGCTGGCCGGCAGCCTTGAATATGGCTTGGCGGTCGGTGGCTACCGTCAACCGGCGAGACAGGTCGAGCAACTGGCTGGTCTGTGCCTGGGTCTCGCGCAGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4699111‑4699261 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccGGCAACCTGGCCGCGCGCCAGCGTCGCCAGTTGCAGGCGCTGCGCGAG  <  NC_002947/4699296‑4699249                                                                                                                                                                                                         GTTGCGCTCCAGCAAGCACACCTGGGCGTCCTGCCACCCGTCCAGGTGCTGGCCGGCAGCCTTGAATATGGCTTGGCGGTCGGTGGCTACCGTCAACCGGCGAGACAGGTCGAGCAACTGGCTGGTCTGTGCCTGGGTCTCGCGCAGCGC                                                   >  1:210585/1‑150          CAGCAAGCACACCTGGGCGTCCTGCCACCCGTCCAGGTGCTGGCCGGCAGCCTTGAATATGGCTTGGCGGTCGGTGGCTACCGTCAACCGGCGAGACAGGTCGAGCAACTGGCTGGTCTGTGCCTGGGTCTCGCGCAGCGCCGGCAACCT                                          >  2:682445/1‑150                                       CGTCCAGGTGCTGGCCGGCAGCCTTGAATATGGCTTGGCGGTCGGTGGCTACCGTCAACCGGCGAGACAGGTCGAGCAACTGGCTGGTCTGTGCCTGGGTCTCGCGCAGCGCCGGCAACCTGGCCGCGCGCCAGCGTCGCCAGTTGCAGG             <  1:682445/150‑1                                                                             CGGTCGGTGGCTACCGTCAACCGGCGAGATAGGTCGAGCAACTGGCTGGTCTGTGCCTGGGTCTCGCGCAGCGCCGGCAACCTGGCCGCGCGCCAGCGTCGCCAGTTGCAGGCGCTGAGCGAG  <  1:642451/123‑1                                                                             CGGTCGGTGGCTACCGTCAACCGGCGAGATAGGTCGAGCAACTGGCTGGTCTGTGCCTGGGTCTCGCGCAGCGCCGGCAACCTGGCCGCGCGCCAGCGTCGCCAGTTGCAGGCGCTGAGCGAG  >  2:642451/1‑123                                                                                                                                                                                                         GTTGCGCTCCAGCAAGCACACCTGGGCGTCCTGCCACCCGTCCAGGTGCTGGCCGGCAGCCTTGAATATGGCTTGGCGGTCGGTGGCTACCGTCAACCGGCGAGACAGGTCGAGCAACTGGCTGGTCTGTGCCTGGGTCTCGCGCAGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4699111‑4699261 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccGGCAACCTGGCCGCGCGCCAGCGTCGCCAGTTGCAGGCGCTGCGCGAG  <  NC_002947/4699296‑4699249

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.