New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4699261	28 (0.950)	4 (0.140)	4/242	NT	12.4%	coding (1473/2655 nt)	kdpD	sensor protein
	?	NC_002947	= 4699296	29 (1.000)					coding (1438/2655 nt)	kdpD	sensor protein

AATATGGCTTGGCGGTCGGTGGCTACCGTCAACCGGCGAGACAGGTCGAGCAACTGGCTGGTCTGTGCCTGGGTCTCGCGCAGCGCCTGCAACTGGCGACGCTGGCGCGCGGCCAGGTTGCCGGTAAGCGCAGCCATCAACAGAAAGAACACCAGTGTCAGCACGTCTTCTTCGCGCTGGATGGTGAACGAGAAGTTGGGCGGTATGAACAGGAAGTCATAGACCAGGAACGACAGCGCGGCGCAAGCCAGCGCAGGTCCCAGG  >  NC_002947/4699175‑4699438                                                                                                                          |                                                                                                                                               aaTATGGCTTGGCGGTCGGTGGCTACCGTCAACCGTCGAGACAGGTCGAGCAACTGGCTGGTCTGTGCCTGGGTCTCGCGCAGCGCCTGCAACTGGCGACGCTGGAGCGCGGCCAGGTTGCCGGTAAGCGCAGCCATCAACAGAAAGAac                                                                                                                    <  1:205834/150‑1 (MQ=255)                           cGTCAACCGGCGAGACAGGTCGAGCAACTGGCTGGTCTGTGCCTGGGTCTCGCGCAGCGCCTGCAACTGGCGACGCTGGCGCGCGGCCAGGTTGCCGGTAAGCGCAGCCATCAACAGAAAGAACACCAGTGTCAGCACGTCTTCTTcgcg                                                                                          >  1:493807/1‑150 (MQ=255)                                    gCGAGACAGGTCGAGCAACTGGCTGGTCTGTGCCTGGGTCTCGCGCAGCGCCTGCAACTGGCGACGCTGGCGCGCGGCCAGGTTGCCGGTAAGCGCAGCCATCaa                                                                                                                              <  2:528479/105‑1 (MQ=255)                                    gCGAGACAGGTCGAGCAACTGGCTGGTCTGTGCCTGGGTCTCGCGCAGCGCCTGCAACTGGCGACGCTGGCGCGCGGCCAGGTTGCCGGTAAGCGCAGCCATCaa                                                                                                                              >  1:528479/1‑105 (MQ=255)                                              tCGAGCAACTGGCTGGTCTGTGCCTGGGTCTCGCGCAGCGCCTGCAACTGGCGACGCTGGCGCGCGGCCAGGTTGCCGGTAAGCGCAGCCATCAACAGAAAGAACACCAGTGTCAGCACGTCTTCTTCGCGCTGGATGGTGAACGAGAAg                                                                       >  1:363773/1‑150 (MQ=255)                                                       tggctggTCTGTGCCTGGGTCTCGCGCAGCGCCTGCAACTGGCGACGCTGGCGCGCGGCCAGGTTGCCGGTAAGCGCAGCCATCAACAGAAAGAACACCAGTGTCAGCACGTCTTCTTCGCGCTGGATGGTGAACGAGAAGTTGGGCGGt                                                              <  2:363773/150‑1 (MQ=255)                                                        ggctggTCTGTGCCTGGGTCTCGCGCAGCGCCTGCAACTGGCGACGCTGGCGCGCGGCCAGGTTGCCGGTAAGCGCAGCCATCAACAGAAAGAACACCAGTGTCAGCACGTCTTCTTCGCGCTGGATGGTGAACGAGAAGTTGGGCGGTa                                                             <  1:432594/150‑1 (MQ=255)                                                         gctggTCTGTGCCTGGGTCTCGCGCAGCNCCTGCAACNGGCGACGCTNGCGCGCGGCCAGGTTGCCGGTAAGCGCAGCCATCAACAGAAAGAACACCAGTGTCAGCACGTCTTCTTCGCGCTGGATGGTGAACGAGAAGTTGGGcagatc                                                            >  1:309810/1‑145 (MQ=255)                                                           tggTCTGTGCCTGGGTCTCGCGCAGCGCCTGCAACTGGCGACGCTGGCGCGCGGCCAGGTTGCCGGTAAGCGCAGCCATCAACAGAAAGAACACCAGTGTCAGCACGTCTTCTTCGCGCTGGATGGTGAACGAGAAGTTGGGCGGTATGa                                                          >  2:527539/1‑150 (MQ=255)                                                              tCTGTGCCTGGGTCTCGCGCAGCGCCTGCAACTGGCGACGCTGGCGCGCGGCCAGGTTGCCGGTAAGCGCAGCCATCAACAGAAAGAACACCAGTGTCAGCACGTCTTCTTCGCGCTGGATGGTGAACGAGAAGTTGGGCGGTATGAACa                                                       >  1:659649/1‑150 (MQ=255)                                                                     cTGGGTCTCGCGCAGCGCCTGCAACTGGCGACGCTGGCGCGCGGCCAGGTTGCCGGTAAGCGCAGCCATCAACAGAAAGAACACCAGTGTCAGCACGTCTTCTTCGCGCTGGATGGTGAACGAGAAGTTGGGCgg                                                               >  1:104151/1‑135 (MQ=255)                                                                     cTGGGTCTCGCGCAGCGCCTGCAACTGGCGACGCTGGCGCGCGGCCAGGTTGCCGGTAAGCGCAGCCATCAACAGAAAGAACACCAGTGTCAGCACGTCTTCTTCGCGCTGGATGGTGAACGAGAAGTTGGGCgg                                                               <  2:104151/135‑1 (MQ=255)                                                                     cTGGGTCTCGCGCAGCGCCTGCAACTGGCGACGCTGGCGCGCGGCCAGGTTGCCGGTAAGCGCAGCCATCAACAGAAAGAACACCAGTGTCAGCACGTCTTCTTCGCGCTGGATGGTGAACGAGAAGTTGGGCGGTATGAACAg                                                      <  1:38882/144‑1 (MQ=255)                                                                     cTGGGTCTCGCGCAGCGCCTGCAACTGGCGACGCTGGCGCGCGGCCAGGTTGCCGGTAAGCGCAGCCATCAACAGAAAGAACACCAGTGTCAGCACGTCTTCTTCGCGCTGGATGGTGAACGAGAAGTTGGGCGGTATGAACAg                                                      >  2:38882/1‑144 (MQ=255)                                                                      tGGGTCTCGCGCAGCGCCTGCAACTGGCGACGCTGGCGCGCGGCCAGGTTGCCGGTAAGCGCAGCCATCAACAGAAAGAACACCAGTGTCAGCACGTCTTCTTCGCGCTGGATGGTGAACGAGAAGTTGGGCGGTATGAACAGGAAGTCa                                               <  2:631045/150‑1 (MQ=255)                                                                        ggTCTCGCGCAGCGCCTGCAACTGGCGACGCTGGCGCGCGGCCAGGTTGCCGGTAAGCGCAGCCATCAACAGAAAGAACACCAGTGTCAGCACGTCTTCTTCGCGCTGGATGGTGAACGAGAAGTTGGGCGGTATGAACAGGAAGTCATa                                             >  2:687796/1‑150 (MQ=255)                                                                         gTCTCGCGCAGCGCCTGCAACTGGCGACGCTGGCGCGCGGCCAGGTTGCCGGTAAGCGCAGCCATCAACAGAAAGAACACCAGTGTCAGCACGTCTTCTTCGCGCTGGATGGTGAACGAGAAGTTGGGCGGTATGAACAGGAAGTCATAg                                            >  1:369805/1‑150 (MQ=255)                                                                          tctcGCGCAGCGCCTGCAACTGGCGACGCTGGCGCGCGGCCAGGTTGCCGGTAAGCGCAGCCATCAACAGAAAGAACACCAGTGTCAGCACGTCGTCTTCGCGCTGGATGGTGAACGAGAAGTTGGGCGGTATGAACAGGAAGTCATAGa                                           >  1:730139/1‑150 (MQ=255)                                                                           ctcGCTCAGCGCCTGCAACTGGCGACGCTGGCGCGCGGCCAGGTTGCCggcgctgcgcgagacccaggcacagaccagccagttgctcgacctatctcgccggttgacggtagccaccgaccg                                                                     <  1:642451‑M2/123‑76 (MQ=255)                                                                           ctcGCTCAGCGCCTGCAACTGGCGACGCTGGCGCGCGGCCAGGTTGCCggcgctgcgcgagacccaggcacagaccagccagttgctcgacctatctcgccggttgacggtagccaccgaccg                                                                     >  2:642451‑M2/1‑48 (MQ=255)                                                                                gcAGCGCCTGCAACTGGCGACGCTGGCGCGCGGCCAGGTTGCCGGTAAGCGCAGCCATCAACAGAAAGAACACCATAATTCCCATTTCTTCTTCGCGCTGGATGGTGAACGAGAAGATGGGAGGTATGAACAGTAAGGCATAGACCAGGa                                     >  1:773023/1‑150 (MQ=255)                                                                                      ccTGCAACTGGCGACGCTGGCGCGCGGCCAGGTTGCCggcgctgcgcgagacccaggcacagaccagccagttgctcgacctgtctcgccggttgacggtagccaccgaccgccaagccatattcaaggctgccggccagcacctggacg                               <  1:682445‑M2/150‑114 (MQ=255)                                                                                        gcaaaCTGGCGACGCTGGCGCGCGGCCAGGTTGCCGGTAAGCGCAGCCATCAACAGAAAGAACACCAGTGTCAGCACGTCTTCTTCGCGCTGGATGGTGAACGAGAAGTTGGGCGGTATGAACAGGaa                                                   >  2:234498/4‑128 (MQ=255)                                                                                        gcaaaCTGGCGACGCTGGCGCGCGGCCAGGTTGCCGGTAAGCGCAGCCATCAACAGAAAGAACACCAGTGTCAGCACGTCTTCTTCGCGCTGGATGGTGAACGAGAAGTTGGGCGGTATGAACAGGaa                                                   <  1:234498/125‑1 (MQ=255)                                                                                              tGGCGACGCTGGCGCGCGGCCAGGTTGCCGGTAAGCGCAGCCATCAACAGAAAGAACACCAGTGTCAGCACGTCTTCTTCGCGCTGGATGGTGAACGAGAAGTTGGGCGGTATGAACAGGAAGTCAt                                              >  1:75725/1‑127 (MQ=255)                                                                                              tGGCGACGCTGGCGCGCGGCCAGGTTGCCGGTAAGCGCAGCCATCAACAGAAAGAACACCAGTGTCAGCACGTCTTCTTCGCGCTGGATGGTGAACGAGAAGTTGGGCGGTATGAACAGGAAGTCAt                                              <  2:75725/127‑1 (MQ=255)                                                                                                 cGACGCTGGCGCGCGGCGAGGTTGCCGGTAAGCGCAGCCATCAACAGAAAGAACACCAGTGTCAGCACGTCTTCTTCGCGCTGGATGGTGAACGAGAAGTTGGGCGGTATGAACAGGAAGTCATAGACCAGGAACGACAGCGCGGCGCaa                    <  1:247987/150‑1 (MQ=255)                                                                                                  gACGCTGGCGCGCGGCCAGGTTGCCGGTAAGCGCAGCCATCAACAGAAAGAACACCAGTGTCAGCACGTCTTCTTCGCGCTGGATGGTGAACGAGAAGTTGGGCGGTATGAACAGGAAGTCATAGACCAGGAACGACAGCGCGGCGCAAg                   <  2:730139/150‑1 (MQ=255)                                                                                                   aCGCTGGCGCGCGGCCAGGTTGCCGGTAAGCGCAGCCATCAACAGAAAGAACACCAGTGTCAGCACGTCTTCTTCGCGCTGGATGGTGAACGAGAAGTTGGGCGGTATGAACAGGAAGTCATAGACCAGGAACGACAGCGCGGCGCAAGc                  <  1:527539/150‑1 (MQ=255)                                                                                                   aCGCTGGCGCGCGGCCAGGTTGCCGGTAAGCGCAGCCATCAACAGAAAGAACACCAGTGTCAGCACGTCTTCTTCGCGCTGGATGGTGAACGAGAAGTTGGGCGGTATGAACAGGAAGTCATAGACCAGGAACGACAGCGCGGCGCAAGc                  <  2:764500/150‑1 (MQ=255)                                                                                                                gCCAGGTTGCCGGTAAGCGCAGCCATCAACAGAAAGAACACCAGTGTCAGCACGTCTTCTTCGCGCTGGATGGTGAACGAGAAGTTGGGCGGTATGAACAGGAAGTCATAGACCAGGAACGACAGCGCGGCGCAAGCCAGCGCAGGTccc     >  1:450092/1‑150 (MQ=255)                                                                                                                 ccAGGTTGCCGGTAAGCGCAGCCATCAACAGAAAGAACACCAGTGTCAGCACGTCTTCTTCGCGCTGGATGGTGAACGAGAAGTTGGGCGGTATGAACAGGAAGTCATAGACCAGGAACGACAGCGCGGCGCAAGCCAGCGCAGGTCCCa    >  2:214512/1‑150 (MQ=255)                                                                                                                   aGGTTGCCggcgctgcgcgagacccaggcacagaccagccagttgctcgacctgtctcgccggttgacggtagccaccgaccgccaagccatattcaaggctgccggccagcacctggacgggtggcaggacgcccaggtgtgcttgctg  >  2:682445‑M2/1‑8 (MQ=255)                                                                                                                          |                                                                                                                                               AATATGGCTTGGCGGTCGGTGGCTACCGTCAACCGGCGAGACAGGTCGAGCAACTGGCTGGTCTGTGCCTGGGTCTCGCGCAGCGCCTGCAACTGGCGACGCTGGCGCGCGGCCAGGTTGCCGGTAAGCGCAGCCATCAACAGAAAGAACACCAGTGTCAGCACGTCTTCTTCGCGCTGGATGGTGAACGAGAAGTTGGGCGGTATGAACAGGAAGTCATAGACCAGGAACGACAGCGCGGCGCAAGCCAGCGCAGGTCCCAGG  >  NC_002947/4699175‑4699438

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.