New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4699261	28 (0.950)	4 (0.140)	4/242	NT	12.4%	coding (1473/2655 nt)	kdpD	sensor protein
	?	NC_002947	= 4699296	29 (1.000)					coding (1438/2655 nt)	kdpD	sensor protein

CCAGCAAGCACACCTGGGCGTCCTGCCACCCGTCCAGGTGCTGGCCGGCAGCCTTGAATATGGCTTGGCGGTCGGTGGCTACCGTCAACCGGCGAGACAGGTCGAGCAACTGGCTGGTCTGTGCCTGGGTCTCGCGCAGCGCCTGCAACTGGCGACGCTGGCGCGCGGCCAGGTTGCCGGTAAGCGCAGCCATCAACAGAAAGAACACCAGTGTCAGCACGTCTTCTTCGCGCTGGATGGTGAACGAGAAGTTGGGCGGTATGAACAGGAAGTCATAGACCAGGAACGACA  >  NC_002947/4699119‑4699409                                                                                                                                               |                                                                                                                                                     ccAGCAAGCACACCTGGGCGTCCTGCCACCCGTCCAGGTGCTGGCCGGCAGCCTTGAATATGGCTTGGCGGTCGGTGGCTACCGTCAACCGGCGAGACAGGTCGAGCAACTGGCTGGTCTGTGCCTGGGTCTCGCGCAGCGCCTGCAACt                                                                                                                                               <  2:210585/150‑1 (MQ=255)  cAGCAAGCACACCTGGGCGTCCTGCCACCCGTCCAGGTGCTGGCCGGCAGCCTTGAATATGGCTTGGCGGTCGGTGGCTACCGTCAACCGGCGAGACAGGTCGAGCAACTGGCTGGTCTGTGCCTGGGTCTCGCGCAGCGCCggcaacct                                                                                                                                              >  2:682445‑M1/1‑142 (MQ=255)       agcaCACCTGGGCGTCCTGCCACCCGTCCAGGTGCTGGCCGGCAGCCTTGAATATGGCTTGGCGGTCGGTGGCTACCGTCAACCGGCGAGACAGGTCGAGCAACTGGCTTGTCTGTGCCTGGGTCTCGCGCAGCGCCTGCAACTGGCGAc                                                                                                                                         <  1:139399/150‑1 (MQ=255)          acacCTGGGCGTCCTGCCACCCGTCCAGGTGCTGGCCGGCAGCCTTGAATATGGCTTGGCGGTCGGTGGCTACCGTCAACCGGCGAGACAGGTCGAGCAACTGGCTGGTCTGTGCCTGGGTCTCGCGCAGCGCCTGCAACTGGCGACGCt                                                                                                                                      >  2:452572/1‑150 (MQ=255)                ggacGTCCTGCCACCCGTCCAGGTGCTGGCCGGCAGCCTTGAATATGGCATGGCGGTAGGTGGCTACCGTCAACCGGAGAGACAGGTCGAGCAACTCGCTGGTCTGACCCTCGGGCCCGCCCAACGCCGGCAACATGCGACGCTGgcgcg                                                                                                                                >  2:247987/4‑150 (MQ=255)                   cGTCCTGCCACCCGTCCAGGTGCTGGCCGGCAGCCTTGAATATGGCTTGGCGGTCGGTGGCTACCGTCAACCGGCGAGACAGGTCGAGCAACTGGCTGGTCTGTGCCTGGGTCTCGCGCAGCGCCTGCAACTGGCGACGCTGGCGCGCgg                                                                                                                             <  1:452572/150‑1 (MQ=255)                          ccACCCGTCCAGGTGCTGGCCGGCAGCCTTGAATATGGCTTGGCGGTCGGTGGCTACCGTCAACCGGCGAGACAGGTCGAGCAACTGGCTGGTCTGTGCCTGGGTCTCGCGCAGCGCCTGCAACTGGCGACGCTGGCGCGCGGCCAGGtt                                                                                                                      <  1:452981/150‑1 (MQ=255)                            aCCCGTCCAGGTGCTGGCCGGCAGCCTTGAATATGGCTTGGCGGTCGGTGGCTACCGTCAACCGGCGAGACAGGTCGAGCAACTGGCTGGTCTGTGCCTGGGTCTCGCGCAGCGCCTGCAACTGGCGACGCTGGCGCGCGGCCa                                                                                                                          >  2:84536/1‑144 (MQ=255)                            aCCCGTCCAGGTGCTGGCCGGCAGCCTTGAATATGGCTTGGCGGTCGGTGGCTACCGTCAACCGGCGAGACAGGTCGAGCAACTGGCTGGTCTGTGCCTGGGTCTCGCGCAGCGCCTGCAACTGGCGACGCTGGCGCGCGGCCa                                                                                                                          <  1:84536/144‑1 (MQ=255)                            aCCCGTCCAGGTGCTGGCCGGCAGCCTTGAATATGGCTTGGCGGTCGGTGGCTACCGTCAACCGGCGAGACAGGTCGAGCAACTGGCTGGTCTGTGACTGGGTCTCGCGCAGCGCCTGCAACTGGCGACGCTGGCGCGCGGCCAGGTTGc                                                                                                                    >  1:764500/1‑150 (MQ=255)                               cGTCCAGGTGCTGGCCGGCAGCCTTGAATATGGCTTGGCGGTCGGTGGCTACCGTCAACCGGCGAGACAGGTCGAGCAACTGGCTGGTCTGTGCCTGGGTCTCGCGCAGCGCCggcaacctggccgcgcgccagcgtcgccagttgcagg                                                                                                                 <  1:682445‑M1/150‑38 (MQ=255)                                                         aaTATGGCTTGGCGGTCGGTGGCTACCGTCAACCGTCGAGACAGGTCGAGCAACTGGCTGGTCTGTGCCTGGGTCTCGCGCAGCGCCTGCAACTGGCGACGCTGGAGCGCGGCCAGGTTGCCGGTAAGCGCAGCCATCAACAGAAAGAac                                                                                       <  1:205834/150‑1 (MQ=255)                                                                     cggtcggtGGCTACCGTCAACCGGCGAGATAGGTCGAGCAACTGGCTGGTCTGTGCCTGGGTCTCGCGCAGCGCCggcaacctggccgcgcgccagcgtcgccagttgcaggcgctgagcgag                                                                                                      <  1:642451‑M1/123‑49 (MQ=255)                                                                     cggtcggtGGCTACCGTCAACCGGCGAGATAGGTCGAGCAACTGGCTGGTCTGTGCCTGGGTCTCGCGCAGCGCCggcaacctggccgcgcgccagcgtcgccagttgcaggcgctgagcgag                                                                                                      >  2:642451‑M1/1‑75 (MQ=255)                                                                                   cGTCAACCGGCGAGACAGGTCGAGCAACTGGCTGGTCTGTGCCTGGGTCTCGCGCAGCGCCTGCAACTGGCGACGCTGGCGCGCGGCCAGGTTGCCGGTAAGCGCAGCCATCAACAGAAAGAACACCAGTGTCAGCACGTCTTCTTcgcg                                                             >  1:493807/1‑150 (MQ=255)                                                                                            gCGAGACAGGTCGAGCAACTGGCTGGTCTGTGCCTGGGTCTCGCGCAGCGCCTGCAACTGGCGACGCTGGCGCGCGGCCAGGTTGCCGGTAAGCGCAGCCATCaa                                                                                                 >  1:528479/1‑105 (MQ=255)                                                                                            gCGAGACAGGTCGAGCAACTGGCTGGTCTGTGCCTGGGTCTCGCGCAGCGCCTGCAACTGGCGACGCTGGCGCGCGGCCAGGTTGCCGGTAAGCGCAGCCATCaa                                                                                                 <  2:528479/105‑1 (MQ=255)                                                                                                      tCGAGCAACTGGCTGGTCTGTGCCTGGGTCTCGCGCAGCGCCTGCAACTGGCGACGCTGGCGCGCGGCCAGGTTGCCGGTAAGCGCAGCCATCAACAGAAAGAACACCAGTGTCAGCACGTCTTCTTCGCGCTGGATGGTGAACGAGAAg                                          >  1:363773/1‑150 (MQ=255)                                                                                                               tggctggTCTGTGCCTGGGTCTCGCGCAGCGCCTGCAACTGGCGACGCTGGCGCGCGGCCAGGTTGCCGGTAAGCGCAGCCATCAACAGAAAGAACACCAGTGTCAGCACGTCTTCTTCGCGCTGGATGGTGAACGAGAAGTTGGGCGGt                                 <  2:363773/150‑1 (MQ=255)                                                                                                                ggctggTCTGTGCCTGGGTCTCGCGCAGCGCCTGCAACTGGCGACGCTGGCGCGCGGCCAGGTTGCCGGTAAGCGCAGCCATCAACAGAAAGAACACCAGTGTCAGCACGTCTTCTTCGCGCTGGATGGTGAACGAGAAGTTGGGCGGTa                                <  1:432594/150‑1 (MQ=255)                                                                                                                 gctggTCTGTGCCTGGGTCTCGCGCAGCNCCTGCAACNGGCGACGCTNGCGCGCGGCCAGGTTGCCGGTAAGCGCAGCCATCAACAGAAAGAACACCAGTGTCAGCACGTCTTCTTCGCGCTGGATGGTGAACGAGAAGTTGGGcagatc                               >  1:309810/1‑145 (MQ=255)                                                                                                                   tggTCTGTGCCTGGGTCTCGCGCAGCGCCTGCAACTGGCGACGCTGGCGCGCGGCCAGGTTGCCGGTAAGCGCAGCCATCAACAGAAAGAACACCAGTGTCAGCACGTCTTCTTCGCGCTGGATGGTGAACGAGAAGTTGGGCGGTATGa                             >  2:527539/1‑150 (MQ=255)                                                                                                                      tCTGTGCCTGGGTCTCGCGCAGCGCCTGCAACTGGCGACGCTGGCGCGCGGCCAGGTTGCCGGTAAGCGCAGCCATCAACAGAAAGAACACCAGTGTCAGCACGTCTTCTTCGCGCTGGATGGTGAACGAGAAGTTGGGCGGTATGAACa                          >  1:659649/1‑150 (MQ=255)                                                                                                                             cTGGGTCTCGCGCAGCGCCTGCAACTGGCGACGCTGGCGCGCGGCCAGGTTGCCGGTAAGCGCAGCCATCAACAGAAAGAACACCAGTGTCAGCACGTCTTCTTCGCGCTGGATGGTGAACGAGAAGTTGGGCgg                                  >  1:104151/1‑135 (MQ=255)                                                                                                                             cTGGGTCTCGCGCAGCGCCTGCAACTGGCGACGCTGGCGCGCGGCCAGGTTGCCGGTAAGCGCAGCCATCAACAGAAAGAACACCAGTGTCAGCACGTCTTCTTCGCGCTGGATGGTGAACGAGAAGTTGGGCgg                                  <  2:104151/135‑1 (MQ=255)                                                                                                                             cTGGGTCTCGCGCAGCGCCTGCAACTGGCGACGCTGGCGCGCGGCCAGGTTGCCGGTAAGCGCAGCCATCAACAGAAAGAACACCAGTGTCAGCACGTCTTCTTCGCGCTGGATGGTGAACGAGAAGTTGGGCGGTATGAACAg                         >  2:38882/1‑144 (MQ=255)                                                                                                                             cTGGGTCTCGCGCAGCGCCTGCAACTGGCGACGCTGGCGCGCGGCCAGGTTGCCGGTAAGCGCAGCCATCAACAGAAAGAACACCAGTGTCAGCACGTCTTCTTCGCGCTGGATGGTGAACGAGAAGTTGGGCGGTATGAACAg                         <  1:38882/144‑1 (MQ=255)                                                                                                                              tGGGTCTCGCGCAGCGCCTGCAACTGGCGACGCTGGCGCGCGGCCAGGTTGCCGGTAAGCGCAGCCATCAACAGAAAGAACACCAGTGTCAGCACGTCTTCTTCGCGCTGGATGGTGAACGAGAAGTTGGGCGGTATGAACAGGAAGTCa                  <  2:631045/150‑1 (MQ=255)                                                                                                                                ggTCTCGCGCAGCGCCTGCAACTGGCGACGCTGGCGCGCGGCCAGGTTGCCGGTAAGCGCAGCCATCAACAGAAAGAACACCAGTGTCAGCACGTCTTCTTCGCGCTGGATGGTGAACGAGAAGTTGGGCGGTATGAACAGGAAGTCATa                >  2:687796/1‑150 (MQ=255)                                                                                                                                 gTCTCGCGCAGCGCCTGCAACTGGCGACGCTGGCGCGCGGCCAGGTTGCCGGTAAGCGCAGCCATCAACAGAAAGAACACCAGTGTCAGCACGTCTTCTTCGCGCTGGATGGTGAACGAGAAGTTGGGCGGTATGAACAGGAAGTCATAg               >  1:369805/1‑150 (MQ=255)                                                                                                                                  tctcGCGCAGCGCCTGCAACTGGCGACGCTGGCGCGCGGCCAGGTTGCCGGTAAGCGCAGCCATCAACAGAAAGAACACCAGTGTCAGCACGTCGTCTTCGCGCTGGATGGTGAACGAGAAGTTGGGCGGTATGAACAGGAAGTCATAGa              >  1:730139/1‑150 (MQ=255)                                                                                                                                   ctcGCTCAGCGCCTGCAACTGGCGACGCTGGCGCGCGGCCAGGTTGCCggcgctgcgcgagacccaggcacagaccagccagttgctcgacctatctcgccggttgacggtagccaccgaccg                                        >  2:642451‑M2/1‑48 (MQ=255)                                                                                                                                   ctcGCTCAGCGCCTGCAACTGGCGACGCTGGCGCGCGGCCAGGTTGCCggcgctgcgcgagacccaggcacagaccagccagttgctcgacctatctcgccggttgacggtagccaccgaccg                                        <  1:642451‑M2/123‑76 (MQ=255)                                                                                                                                        gcAGCGCCTGCAACTGGCGACGCTGGCGCGCGGCCAGGTTGCCGGTAAGCGCAGCCATCAACAGAAAGAACACCATAATTCCCATTTCTTCTTCGCGCTGGATGGTGAACGAGAAGATGGGAGGTATGAACAGTAAGGCATAGACCAGGa        >  1:773023/1‑150 (MQ=255)                                                                                                                                              ccTGCAACTGGCGACGCTGGCGCGCGGCCAGGTTGCCggcgctgcgcgagacccaggcacagaccagccagttgctcgacctgtctcgccggttgacggtagccaccgaccgccaagccatattcaaggctgccggccagcacctggacg  <  1:682445‑M2/150‑114 (MQ=255)                                                                                                                                               |                                                                                                                                                     CCAGCAAGCACACCTGGGCGTCCTGCCACCCGTCCAGGTGCTGGCCGGCAGCCTTGAATATGGCTTGGCGGTCGGTGGCTACCGTCAACCGGCGAGACAGGTCGAGCAACTGGCTGGTCTGTGCCTGGGTCTCGCGCAGCGCCTGCAACTGGCGACGCTGGCGCGCGGCCAGGTTGCCGGTAAGCGCAGCCATCAACAGAAAGAACACCAGTGTCAGCACGTCTTCTTCGCGCTGGATGGTGAACGAGAAGTTGGGCGGTATGAACAGGAAGTCATAGACCAGGAACGACA  >  NC_002947/4699119‑4699409

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.