New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5081636	43 (1.460)	3 (0.100)	3/238	NT	7.2%	intergenic (‑50/+53)	lysC/alaS	aspartokinase/alanine‑‑tRNA ligase
	?	NC_002947	= 5081683	36 (1.260)					intergenic (‑97/+6)	lysC/alaS	aspartokinase/alanine‑‑tRNA ligase

TGACCTTTTCGGCTACCTGCTCGATCCGCTCGATGGAACCGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5081508‑5081636 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgaGGGGGTGGAGGGTCTAGTGGCCACACAGGCCACTCCCGTCCACCCCTTCATGTTG  <  NC_002947/5081683‑5081629                                                                                                                                                                                          TGACCTTTTCGGCTACCTGCTCGATCCGCTCGATGGAACCGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACAT                                                           >  1:552351/1‑127 TGACCTTTTCGGCTACCTGCTCGATCCGCTCGATGGAACCGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACAT                                                           <  2:552351/127‑1                                   GGAACCGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAGGGGGTGGAGGGTCCAGTGGCCACACAGGCCACTCCCGTCCACCCCTTCATGTTG  <  1:762140/150‑1                                                                              ATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAGGGGGTGGAGGGTCTAGTGGCCACACAGGCCACTCCCGTCCACCCCTT         <  1:398812/100‑1                                                                              ATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAGGGGGTGGAGGGTCTAGTGGCCACACAGGCCACTCCCGTCCACCCCTT         >  2:398812/1‑100                                                                                                                                                                                          TGACCTTTTCGGCTACCTGCTCGATCCGCTCGATGGAACCGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5081508‑5081636 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgaGGGGGTGGAGGGTCTAGTGGCCACACAGGCCACTCCCGTCCACCCCTTCATGTTG  <  NC_002947/5081683‑5081629

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.