New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5081636	43 (1.460)	3 (0.100)	3/238	NT	7.2%	intergenic (‑50/+53)	lysC/alaS	aspartokinase/alanine‑‑tRNA ligase
	?	NC_002947	= 5081683	36 (1.260)					intergenic (‑97/+6)	lysC/alaS	aspartokinase/alanine‑‑tRNA ligase

GATGGAACCGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGACGGCCGCCGCCCTTGCCACCCACCGCCGCAGCGGCTTGTTTCATCAGATC  >  NC_002947/5081539‑5081829                                                                                                                                                 |                                                                                                                                                   gATGGAACCGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCAtc                                                                                                                                               >  1:686474/1‑150 (MQ=255)      aaCCGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCaaa                                                                                                                                          <  2:760037/150‑1 (MQ=255)         cGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTc                                                                                                                                       >  2:711971/1‑150 (MQ=255)                 gTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCAATATAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCATGctct                                                                                                                               >  1:743130/1‑150 (MQ=255)                  tGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTg                                                                                                                              >  1:65223/1‑150 (MQ=255)                      gccAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGc                                                                                                                             <  1:631591/147‑1 (MQ=255)                      gccAAATTTATGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGc                                                                                                                             >  2:631591/1‑147 (MQ=255)                       ccAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCGATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAAt                                                                                                                         <  2:575348/150‑1 (MQ=255)                       ccAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAAt                                                                                                                         >  1:279729/1‑150 (MQ=255)                       ccAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAAt                                                                                                                         <  2:686474/150‑1 (MQ=255)                        cAAACTTCTGTATGATCAACGCCATTTCAATGGTGCCTGAGCCCATACCGGGCCCCCAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCGCCCCCTCATCTCAAAGTCCCTGCTCTGCGAATg                                                                                                                        <  1:373112/150‑1 (MQ=255)                               cTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGc                                                                                                                 <  1:506732/150‑1 (MQ=255)                                  tACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAg                                                                                                              <  2:279729/150‑1 (MQ=255)                                                    aaTGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAACACTGTACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAg                                                                                            >  1:418523/1‑150 (MQ=255)                                                      tGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAggg                                                                                          <  1:724052/150‑1 (MQ=255)                                                      tGGTGCCGCAGCCCATACAGAGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAggg                                                                                          <  1:147241/150‑1 (MQ=255)                                                                gCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTc                                                                                >  2:319202/1‑150 (MQ=255)                                                                 cccATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGc                                                                                      <  1:80559/143‑1 (MQ=255)                                                                 cccATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGc                                                                                      >  2:80559/1‑143 (MQ=255)                                                                 cccATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCg                                                                               >  1:297229/1‑150 (MQ=255)                                                                            ccccAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCGaccccc                                                                    >  2:442767/1‑150 (MQ=255)                                                                              ccAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGc                                                                                                                             <  2:692944/91‑1 (MQ=255)                                                                              ccAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCACTGCTCTGc                                                                                                                             >  1:692944/1‑91 (MQ=255)                                                                                   aaaCAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGcc                                                             <  1:311362/150‑1 (MQ=255)                                                                                         tCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTcc                                                       >  1:630390/1‑150 (MQ=255)                                                                                           cAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTGGACCCTCCACCCCCtcatgttggattgttttttggggccctgtatgggctgaggcaccattgaaatggcgttgatcgtacagaaatttggcggcacctctgtcggttcc                                                     <  1:762140‑M2/150‑96 (MQ=255)                                                                                                  aaGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCtcatgttggattgttttttggggccctgtatgggctgaggcaccattgaaat                                                                                                >  2:398812‑M2/1‑48 (MQ=255)                                                                                                  aaGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCtcatgttggattgttttttggggccctgtatgggctgaggcaccattgaaat                                                                                                <  1:398812‑M2/100‑53 (MQ=255)                                                                                                          gACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGACGGCCGCCGCCCtt                                      <  1:562924/150‑1 (MQ=255)                                                                                                                      cTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGACGGCCGCCGCCCTTGCCACCCAccgc                          >  1:83790/1‑150 (MQ=255)                                                                                                                               cACTAGACCCTCCACCACCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGACGGCCGCCGCCCTTGCCACCCACCGCCGCAGCGGc                 >  1:189306/1‑150 (MQ=255)                                                                                                                                cctcgACCCTCCACCCCCTCATATTAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGACGGCCGCCGCCCTTGCCACCCACCGCCGCAGCGGCt                >  2:251052/5‑150 (MQ=255)                                                                                                                                 cTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGAc                                                   <  2:303820/114‑1 (MQ=255)                                                                                                                                 cTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGAc                                                   >  1:303820/1‑114 (MQ=255)                                                                                                                                  tAGACCCTCCCCCCCCTCACCTCCAACTCCCTGCTCTGCGAATCGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCCCCCTGGGCCATGTCCGGACGGCCGCCGCCCTTGCCACCCTCCGCCGCAGCGGCTTg              <  1:434172/150‑1 (MQ=255)                                                                                                                                     gtgttCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGACGGCCGCCGCCCTTGCCACCCACCGCCGCAGCGGCTTGttt           >  2:738331/5‑150 (MQ=255)                                                                                                                                     gtgttCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGACGGCCGCCGCCCTTGCCACCCACCGCCGCAGCGGCTTGttt           >  2:738597/5‑150 (MQ=255)                                                                                                                                       ccTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGACGGCCGCCGCCCTTGCCACCCACCGCCGCAGCGGCTTGTTtca         >  1:557317/1‑150 (MQ=255)                                                                                                                                       ccTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGACGGCCGCCGCCCTTGCCACCCACCGCCGCAGCGGCTGGTTtca         >  2:41573/1‑150 (MQ=255)                                                                                                                                         tCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGACGGCCGCCGCCCTTGCCACCCACCGCCGCAGCGGCTTGTTtcatc       >  1:376232/1‑150 (MQ=255)                                                                                                                                              ccccTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGACGGCCGCCGCCCTTGCCACCCACCGCCGCAGCGGCTTGTTTCATCAGATc  <  2:473942/150‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                   GATGGAACCGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGGACGGCCGCCGCCCTTGCCACCCACCGCCGCAGCGGCTTGTTTCATCAGATC  >  NC_002947/5081539‑5081829

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.