| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5081636 | 43 (1.460) | 3 (0.100) | 3/238 | NT | 7.2% | intergenic (‑50/+53) | lysC/alaS | aspartokinase/alanine‑‑tRNA ligase |
| ? | NC_002947 | = 5081683 | 36 (1.260) | intergenic (‑97/+6) | lysC/alaS | aspartokinase/alanine‑‑tRNA ligase | |||||
CTTCACGGTGTTTCTTGACCTTTTCGGCTACCTGCTCGATCCGCTCGATGGAACCGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGG > NC_002947/5081493‑5081778 | cTTCACGGTGTTTCTTGACCTTTTCGGCTACCTGCTCGATCCGCTCGATGGAACCGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGt < 1:36718/150‑1 (MQ=255) ggTGTTTCTTGACCTTTTCGGCTACCTGCTCGATCCTCTCGATGGAACCGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACgg > 2:562924/1‑150 (MQ=255) tgtTTCTTGACCTTTTCGGCTACCTGCTCGATCCGCTCGATGGAACCGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGa < 1:427126/150‑1 (MQ=255) tttCTTGACCTTTTCGGCTACCTGCTCGATCCGCTCGATGGAACCGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGt > 2:724052/1‑150 (MQ=255) ttGACCTTTTCGGCTACCTGCTCGATCCGCTCGATGGAACCGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGcc > 2:311362/1‑150 (MQ=255) cTTTTCGGCTACCTGCTCGATCCGCTCGATGGAACCGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCtgtgt < 1:489547/150‑1 (MQ=255) ttCGGCTACCTGCTCGATCCGCTCGATGGAACCGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGc < 2:359958/150‑1 (MQ=255) ggCTACCTGCTCGATCCGCTCGATGGAACCGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCAc < 1:586990/150‑1 (MQ=255) gCTACCTGCTCGATCCGCTCGATGGAACCGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCtgtgtg > 2:520272/1‑144 (MQ=255) gCTACCTGCTCGATCCGCTCGATGGAACCGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCtgtgtg < 1:520272/144‑1 (MQ=255) gCTCGATCCGCTCGATGGAACCGACAGAGGTGCCGCGAAATTTCTGTACGATCAACGACATTTCAATGGTGCGTCAGCCCATACAGGGCCCGAAAAAAAAATCCAACATGAAGGGGTGGAAGGGAGTGGCCAGTGTGGCCACTAAACCCt > 2:324515/1‑150 (MQ=255) aTCCGCTCGATGGAACCGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCACAGTCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGTAGTGGCCTGTGTGGCCACTAGACCCTCCAcc < 1:63775/150‑1 (MQ=255) gATGGAACCGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCAtc > 1:686474/1‑150 (MQ=255) ggAACCGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAgggggtggagggtccagtggccacacaggccactcccgtccaccccttcatgttg < 1:762140‑M1/150‑56 (MQ=255) aaCCGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCaaa < 2:760037/150‑1 (MQ=255) cGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTc > 2:711971/1‑150 (MQ=255) aCAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTa > 2:324987/1‑121 (MQ=255) aCAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTa < 1:324987/121‑1 (MQ=255) gTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCAATATAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCATGctct > 1:743130/1‑150 (MQ=255) tGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTg > 1:65223/1‑150 (MQ=255) gccAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGc < 1:631591/147‑1 (MQ=255) gccAAATTTATGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGc > 2:631591/1‑147 (MQ=255) ccAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCGATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAAt < 2:575348/150‑1 (MQ=255) ccAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAAt < 2:686474/150‑1 (MQ=255) ccAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAAt > 1:279729/1‑150 (MQ=255) cAAACTTCTGTATGATCAACGCCATTTCAATGGTGCCTGAGCCCATACCGGGCCCCCAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCGCCCCCTCATCTCAAAGTCCCTGCTCTGCGAATg < 1:373112/150‑1 (MQ=255) cTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGc < 1:506732/150‑1 (MQ=255) tACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAg < 2:279729/150‑1 (MQ=255) aTTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAgggggtggagggtctagtggccacacaggccactcccgtccacccctt < 1:398812‑M1/100‑49 (MQ=255) aTTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAgggggtggagggtctagtggccacacaggccactcccgtccacccctt > 2:398812‑M1/1‑52 (MQ=255) aTTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCAccc > 2:712010/1‑97 (MQ=255) aTTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCAccc < 1:712010/97‑1 (MQ=255) aaTGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAACACTGTACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAg > 1:418523/1‑150 (MQ=255) tGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAggg < 1:724052/150‑1 (MQ=255) tGGTGCCGCAGCCCATACAGAGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAggg < 1:147241/150‑1 (MQ=255) gCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTc > 2:319202/1‑150 (MQ=255) cccATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGc < 1:80559/143‑1 (MQ=255) cccATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGc > 2:80559/1‑143 (MQ=255) cccATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCg > 1:297229/1‑150 (MQ=255) ccccAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCGaccccc > 2:442767/1‑150 (MQ=255) ccAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGc < 2:692944/91‑1 (MQ=255) ccAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCACTGCTCTGc > 1:692944/1‑91 (MQ=255) cAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCt > 2:14059/1‑59 (MQ=255) cAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCt < 1:14059/59‑1 (MQ=255) aaaCAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGcc < 1:311362/150‑1 (MQ=255) tCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTcc > 1:630390/1‑150 (MQ=255) cAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTGGACCCTCCACCCCCtcatgttggattgttttttggggccctgtatgggctgaggcaccattgaaatggcgttgatcgtacagaaatttggcggcacctctgtcggttcc < 1:762140‑M2/150‑96 (MQ=255) aaGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCtcatgttggattgttttttggggccctgtatgggctgaggcaccattgaaat > 2:398812‑M2/1‑48 (MQ=255) aaGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCtcatgttggattgttttttggggccctgtatgggctgaggcaccattgaaat < 1:398812‑M2/100‑53 (MQ=255) | CTTCACGGTGTTTCTTGACCTTTTCGGCTACCTGCTCGATCCGCTCGATGGAACCGACAGAGGTGCCGCCAAATTTCTGTACGATCAACGCCATTTCAATGGTGCCTCAGCCCATACAGGGCCCCAAAAAACAATCCAACATGAAGGGGTGGACGGGAGTGGCCTGTGTGGCCACTAGACCCTCCACCCCCTCATCTCAAAGTCCCTGCTCTGCGAATGGCACGGCCAGCGCCAGGGCCTGGTCCAGGGCAGCGACGTCGACGCCACCACCCTGGGCCATGTCCGG > NC_002947/5081493‑5081778 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |