New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5119634 =	52 (1.760)	4 (0.150)	4/216	NT	8.2%	intergenic (+19/+112)	PP_4505/PP_4506	sensor histidine kinase/nitroreductase family protein
	?	NC_002947	5119711 =	44 (1.700)					intergenic (+96/+35)	PP_4505/PP_4506	sensor histidine kinase/nitroreductase family protein

TGCTGGAAACGGCTGATTTCGTTAGTAGCTGGGGTGAGTAACCTGGCCTTGGGCTGATTCATGCATCAAGGCATCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5119786‑5119634 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccgcgaagaggccGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAGCCGTTTCCAGCACCGGCGCCGTCCGCGGTTCGGTCAGCGGCGTACCGACATACAGGTAGCCGATCAGCTCCTC  >  NC_002947/5119711‑5119847                                                                                                                                                                                                                                                                                                    TGCTGGAAACGGCTGATTTCGTTAGTAGCTGGGGTGAGTAACCTGGCCTTGGGCTGATTCATGCATCAAGGCATCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAG                                                                                                                                              >  1:400587/1‑150   CTGGAAACGGCTGATTTCGTTAGTAGCTGGGGTGAGTAACCTGGCCTTGGGCTGATTCATGCATCAAGGCATCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGC                                                                                                                                            >  2:778485/1‑150                                                                                         GGTGAACCCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAGCCGTTTCCAGCACCGGC                                                          <  1:726046/146‑1                                                                                         GGTGAACCCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAGCCGTTTCCAGCACCGGC                                                          >  2:726046/1‑146                                                                                                CCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAGCC                                                                         <  1:589864/124‑1                                                                                                CCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAGCC                                                                         >  2:589864/1‑124                                                                                                                                             CCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAGCCGTTTCCAGCACCGGCGCCGTCCGCGGTTCGGTCAGCGGCGTACCGACATACAGGTAGCCGATCAGCTCCTC  >  2:136126/1‑150                                                                                                                                                                                                                                                                                                    TGCTGGAAACGGCTGATTTCGTTAGTAGCTGGGGTGAGTAACCTGGCCTTGGGCTGATTCATGCATCAAGGCATCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5119786‑5119634 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccgcgaagaggccGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAGCCGTTTCCAGCACCGGCGCCGTCCGCGGTTCGGTCAGCGGCGTACCGACATACAGGTAGCCGATCAGCTCCTC  >  NC_002947/5119711‑5119847

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.