New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5119634 =	52 (1.760)	4 (0.150)	4/216	NT	8.2%	intergenic (+19/+112)	PP_4505/PP_4506	sensor histidine kinase/nitroreductase family protein
	?	NC_002947	5119711 =	44 (1.700)					intergenic (+96/+35)	PP_4505/PP_4506	sensor histidine kinase/nitroreductase family protein

GGGCTGGCGATTGCGCGCAAGGCAGCGGAGCGCCATGGCGGTAGCCTGATGCTGGAGAATCATCCACAGGGTGGGTTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAGCCGTTTCC  >  NC_002947/5119493‑5119782                                                                                                                                              |                                                                                                                                                      gggCTGGCGATTGCGCGCAAGGCAGCGGAGCGCCATGGCGGTAGCCTGATGCTGGAGAATCATCCACAGGGTGGGTTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTc                                                                                                                                               >  1:54830/1‑150 (MQ=255)     tGGCGATTGCGCGCAAGGCAGCGGAGCGCCATGGCGGTAGCCTGATGCTGGAGAATCATCCACAGGGTGGGTTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCg‑g                                                                                                                                          >  2:260499/1‑150 (MQ=255)     gaggagctgatcggctacctgtatgtcggtacgccgctgaccgaaccgcggacggcgccggtgctggaaacggctgatttcgttagtagctggggtgagtaacctggccttgggctgattcatgcatcaaggcatccGGCCTCTTCGCg‑g                                                                                                                                          >  2:136126‑M1/138‑150 (MQ=255)         gATTGCGCGCAAGGCAGCGGAGCGCCATGGCGGTAGCCTGATGCTGGAGAATCATCCACAGGGTGGGTTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATTGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTaa                                                                                                                                      >  2:452389/1‑150 (MQ=255)                        aGCGGAGCGCCATGGCGGTAGCCTGATGCTGGAGAATCATCCACAGGGTGGGTTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAgg                                                                                                                       >  1:15687/1‑150 (MQ=255)                            gAGCGCCATGGCGGTAGCCTGATGCTGGAGAATCATCCACAGGGTGGGTTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGAt                                                                                                                   >  1:44282/1‑150 (MQ=255)                              gcgcCATGGCGGTAGCCTGATGCTGGAGAATCATCCACAGGGTGGGTTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGCTGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGAtgt                                                                                                                 <  2:517849/150‑1 (MQ=255)                              gcgcCATGGCGGTAGCCTGATGCTGGAGAATCATCCACAGGGTGGGTTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGAtgt                                                                                                                 <  2:15687/150‑1 (MQ=255)                                 ccATGGCGGTAGCCTGATGCTGGAGAATCATCCACAGGGTGGGTTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGa                                                                                                              <  1:490222/150‑1 (MQ=255)                                  cATGGCGGTAGCCTGATGCTGGAGAATCATCCACAGGGTGGGTTTGTGGCCATGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGAt                                                                                                             <  1:126528/150‑1 (MQ=255)                                       cGGTAGCCTGATGCTGGAGAATCATCCACAGGGTGGGTTTGTGGCCAGGATGGTGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCCCCTACAGGGGATGTGGATGCtgt                                                                                                        >  2:111362/1‑150 (MQ=255)                                        ggTAGCCTGATGCTGGAGAATCATCCACAGGGTGGGTTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCtgtt                                                                                                       <  2:54830/150‑1 (MQ=255)                                                    cTGGAGAATCATCCACAGGGTGGGTTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGt                                                                                           <  1:602770/150‑1 (MQ=255)                                                           atcatcCACAGGGTGGGTTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCcg                                                                                    >  1:551650/1‑150 (MQ=255)                                                            tcatcCACAGGGTGGGTTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCcgc                                                                                   >  2:388151/1‑150 (MQ=255)                                                             gccggtgctggaaacggctgatttcgttagtagctggggtgagtaacctggccttgggctgattcatgcatcaaggcatccGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCAcc                                                                                      >  2:726046‑M1/82‑146 (MQ=255)                                                             gccggtgctggaaacggctgatttcgttagtagctggggtgagtaacctggccttgggctgattcatgcatcaaggcatccGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCAcc                                                                                      <  1:726046‑M1/65‑1 (MQ=255)                                                                      ggtgggtTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCg                                                                         <  1:388151/150‑1 (MQ=255)                                                                      ggtgggtTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCg                                                                         >  2:51524/1‑150 (MQ=255)                                                                       gtgggtTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCAc                                                                                       <  2:380773/135‑1 (MQ=255)                                                                       gtgggtTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCAc                                                                                       >  1:380773/1‑135 (MQ=255)                                                                        tgggtTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGa                                                                       <  2:442071/150‑1 (MQ=255)                                                                           gtTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGc                                                                    >  2:692238/1‑150 (MQ=255)                                                                           gtTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCACCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGc                                                                    >  1:333380/1‑150 (MQ=255)                                                                            ggctgatttcgttagtagctggggtgagtaacctggccttgggctgattcatgcatcaaggcatccGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCgg                                                                                             <  1:589864‑M1/58‑1 (MQ=255)                                                                            ggctgatttcgttagtagctggggtgagtaacctggccttgggctgattcatgcatcaaggcatccGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCgg                                                                                             >  2:589864‑M1/67‑124 (MQ=255)                                                                             ttGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGTG‑GGTGAACCCGCTTCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCt                                                                  <  1:576081/150‑1 (MQ=255)                                                                                tgGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGGGAGGGTTCACCCGCGAAGAGGCCGGATGCCTTGa                                                               >  1:322393/1‑150 (MQ=255)                                                                                 ggCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATTGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGAt                                                              <  1:452389/150‑1 (MQ=255)                                                                                 ggCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGAt                                                              >  2:467413/1‑150 (MQ=255)                                                                                  gCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAg                                                                                                   >  2:512559/1‑112 (MQ=255)                                                                                  gCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAg                                                                                                   <  1:512559/112‑1 (MQ=255)                                                                                   ccAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGc                                                            >  1:545516/1‑150 (MQ=255)                                                                                     aGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCAt                                                          <  2:551650/150‑1 (MQ=255)                                                                                       gCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGa                                                        >  1:778485/1‑150 (MQ=255)                                                                                       gCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGa                                                        >  2:400587/1‑150 (MQ=255)                                                                                        cTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCtgtt                                                                                                       <  2:160465/102‑1 (MQ=255)                                                                                        cTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCtgtt                                                                                                       >  1:160465/1‑102 (MQ=255)                                                                                            aGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAg                                                   <  1:260499/150‑1 (MQ=255)                                                                                            aGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAg                                                   <  2:560049/150‑1 (MQ=255)                                                                                                 cccTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGAt                                                              >  2:208346/1‑134 (MQ=255)                                                                                                 cccTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGAt                                                              <  1:208346/134‑1 (MQ=255)                                                                                                 cccTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCAGGATGCCTTGATGCATGAATCAGCCCaa                                              >  2:563004/1‑150 (MQ=255)                                                                                                  ccTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAg                                             >  2:703827/1‑150 (MQ=255)                                                                                                       gCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCGTGATGCATGAATCAGCCCAAGGCCAg                                        <  1:21124/150‑1 (MQ=255)                                                                                                       gCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGAAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAg                                        <  2:378364/150‑1 (MQ=255)                                                                                                        cTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAgg                                       <  1:703827/150‑1 (MQ=255)                                                                                                         tGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAg                                             <  2:643580/143‑1 (MQ=255)                                                                                                         tGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAg                                             >  1:643580/1‑143 (MQ=255)                                                                                                                      agTTGATGGGGTGCAAAGGCACCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGc                         <  2:333380/150‑1 (MQ=255)                                                                                                                          gATGGGGTGCAAAGGCGCCAGGCCT‑AACGCGCGGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGctact                     >  1:419007/1‑150 (MQ=255)                                                                                                                           aTGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGctacta                    >  1:317788/1‑150 (MQ=255)                                                                                                                               ggTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGa                >  2:654805/1‑150 (MQ=255)                                                                                                                                gTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGaa               >  2:658241/1‑150 (MQ=255)                                                                                                                                    aaaGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCa           <  1:692238/150‑1 (MQ=255)                                                                                                                                     aaGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGCGCTGAGCGGGAAGCCGGAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAg          <  2:419007/150‑1 (MQ=37)                                                                                                                                       ggggcCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATg                                                                     >  1:797083/4‑89 (MQ=255)                                                                                                                                       ggCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATg                                                                     <  2:797083/89‑1 (MQ=255)                                                                                                                                            cAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGTGGGTTCACCCGCGAAGAGGCCGGATGcc                                                                   <  1:778293/86‑1 (MQ=255)                                                                                                                                            cAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGTGGGTTCACCCGCGAAGAGGCCGGATGcc                                                                   >  2:778293/1‑86 (MQ=255)                                                                                                                                            cAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGATCTATGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAGCCGTTTc   >  1:344700/1‑150 (MQ=255)                                                                                                                                             aGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCAccc                             >  2:559898/1‑123 (MQ=255)                                                                                                                                             aGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCAccc                             <  1:559898/123‑1 (MQ=255)                                                                                                                                             aGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAGCCGTTTcc  <  1:467413/150‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                      GGGCTGGCGATTGCGCGCAAGGCAGCGGAGCGCCATGGCGGTAGCCTGATGCTGGAGAATCATCCACAGGGTGGGTTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAGCCGTTTCC  >  NC_002947/5119493‑5119782

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.