New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5119634 =	52 (1.760)	4 (0.150)	4/216	NT	8.2%	intergenic (+19/+112)	PP_4505/PP_4506	sensor histidine kinase/nitroreductase family protein
	?	NC_002947	5119711 =	44 (1.700)					intergenic (+96/+35)	PP_4505/PP_4506	sensor histidine kinase/nitroreductase family protein

GGTGGGTTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAGCCGTTTCCAGCACCGGCGCCGTCCGCGGTTCGGTCAGCGGCGTACCGACATACAGGTAGCCGATCAGCTCCTC  >  NC_002947/5119562‑5119847                                                                                                                                                       |                                                                                                                                         ggtgggtTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCg                                                                                                                                          >  2:51524/1‑150 (MQ=255) ggtgggtTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCg                                                                                                                                          <  1:388151/150‑1 (MQ=255)   tgggtTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGa                                                                                                                                        <  2:442071/150‑1 (MQ=255)      gtTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGc                                                                                                                                     >  2:692238/1‑150 (MQ=255)      gtTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCACCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGc                                                                                                                                     >  1:333380/1‑150 (MQ=255)        ttGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGTG‑GGTGAACCCGCTTCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCt                                                                                                                                   <  1:576081/150‑1 (MQ=255)           tgGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGGGAGGGTTCACCCGCGAAGAGGCCGGATGCCTTGa                                                                                                                                >  1:322393/1‑150 (MQ=255)            ggCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATTGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGAt                                                                                                                               <  1:452389/150‑1 (MQ=255)            ggCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGAt                                                                                                                               >  2:467413/1‑150 (MQ=255)              ccAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGc                                                                                                                             >  1:545516/1‑150 (MQ=255)                aGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCAt                                                                                                                           <  2:551650/150‑1 (MQ=255)                  gCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGa                                                                                                                         >  2:400587/1‑150 (MQ=255)                  gCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGa                                                                                                                         >  1:778485/1‑150 (MQ=255)                       aGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAg                                                                                                                    <  2:560049/150‑1 (MQ=255)                       aGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAg                                                                                                                    <  1:260499/150‑1 (MQ=255)                            cccTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGAt                                                                                                                               <  1:208346/134‑1 (MQ=255)                            cccTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGAt                                                                                                                               >  2:208346/1‑134 (MQ=255)                            cccTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCAGGATGCCTTGATGCATGAATCAGCCCaa                                                                                                               >  2:563004/1‑150 (MQ=255)                             ccTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAg                                                                                                              >  2:703827/1‑150 (MQ=255)                                  gCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCGTGATGCATGAATCAGCCCAAGGCCAg                                                                                                         <  1:21124/150‑1 (MQ=255)                                  gCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGAAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAg                                                                                                         <  2:378364/150‑1 (MQ=255)                                   cTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAgg                                                                                                        <  1:703827/150‑1 (MQ=255)                                    tGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAg                                                                                                              >  1:643580/1‑143 (MQ=255)                                    tGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAg                                                                                                              <  2:643580/143‑1 (MQ=255)                                                 agTTGATGGGGTGCAAAGGCACCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGc                                                                                          <  2:333380/150‑1 (MQ=255)                                                     gATGGGGTGCAAAGGCGCCAGGCCT‑AACGCGCGGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGctact                                                                                      >  1:419007/1‑150 (MQ=255)                                                      aTGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGctacta                                                                                     >  1:317788/1‑150 (MQ=255)                                                          ggTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGa                                                                                 >  2:654805/1‑150 (MQ=255)                                                           gTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGaa                                                                                >  2:658241/1‑150 (MQ=255)                                                               aaaGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCa                                                                            <  1:692238/150‑1 (MQ=255)                                                                aaGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGCGCTGAGCGGGAAGCCGGAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAg                                                                           <  2:419007/150‑1 (MQ=37)                                                                  ggggcCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATg                                                                                                                                      >  1:797083/4‑89 (MQ=255)                                                                  ggCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATg                                                                                                                                      <  2:797083/89‑1 (MQ=255)                                                                       cAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGTGGGTTCACCCGCGAAGAGGCCGGATGcc                                                                                                                                    >  2:778293/1‑86 (MQ=255)                                                                       cAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGTGGGTTCACCCGCGAAGAGGCCGGATGcc                                                                                                                                    <  1:778293/86‑1 (MQ=255)                                                                       cAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGATCTATGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAGCCGTTTc                                                                    >  1:344700/1‑150 (MQ=255)                                                                        aGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCAccc                                                                                              >  2:559898/1‑123 (MQ=255)                                                                        aGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCAccc                                                                                              <  1:559898/123‑1 (MQ=255)                                                                        aGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAGCCGTTTcc                                                                   <  1:467413/150‑1 (MQ=255)                                                                          GCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAGCCGTTTCCAg                                                                 >  2:778485‑M1/1‑150 (MQ=255)                                                                            CTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAGCCGTTTCCAGCa                                                               >  1:400587‑M1/1‑150 (MQ=255)                                                                                      ggtgaacccgctcctacaacagcatccacatcccctgtaggagcgggtttacccgcgaagaggccGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAGCCGTTTCCAGCACCGgc                                                          <  1:726046‑M2/81‑1 (MQ=255)                                                                                      ggtgaacccgctcctacaacagcatccacatcccctgtaggagcgggtttacccgcgaagaggccGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAGCCGTTTCCAGCACCGgc                                                          >  2:726046‑M2/66‑146 (MQ=255)                                                                                             ccgctcctacaacagcatccacatcccctgtaggagcgggtttacccgcgaagaggccGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAGcc                                                                         <  1:589864‑M2/66‑1 (MQ=255)                                                                                             ccgctcctacaacagcatccacatcccctgtaggagcgggtttacccgcgaagaggccGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAGcc                                                                         >  2:589864‑M2/59‑124 (MQ=255)                                                                                                     aCAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCa                                                                            <  2:262357/113‑1 (MQ=255)                                                                                                     aCAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCa                                                                            >  1:262357/1‑113 (MQ=255)                                                                                                          ggATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAACCAGCCGTTTCCAGCACCGGCGCCGTCCGCGGTTCGGTCAgcggc                                  <  1:654805/150‑1 (MQ=255)                                                                                                                 gATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCa                                                                            <  1:467606/101‑1 (MQ=255)                                                                                                                 gATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCa                                                                            >  2:467606/1‑101 (MQ=255)                                                                                                                  aTGCTGTTGTAGGAGCTGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAGCCGTTTCCAGCACCGGCGCCGTCCGCGGTTCGGTCAGCGGCGTACCGAc                          <  2:344700/150‑1 (MQ=255)                                                                                                                      tgttgtAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAGCCGTTTCCAGCACCGGCGCCGTCCGCGGTTCGGTCAGCGGCGTACCGACATAc                      <  2:545516/150‑1 (MQ=255)                                                                                                                           tAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAGCCGTTTCCAGCACCGGCGCCGTCCGCGGTTCGGTCAGCGGCGTACCGACATACAGGTa                 >  1:753896/1‑150 (MQ=255)                                                                                                                                 cGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAGCCGTTTCCAGCACCGGCGCCGTCCGCGGTTCGGTCAGCGGCGTACCGACATACAGGTAGCCGAt           <  1:51524/150‑1 (MQ=255)                                                                                                                                  ggggTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAGCCGTTTCCAGCACCGGCGCCGTCCGCGGTTCGGTCAGCGGCGTACCGACATACAGGTAGCCGATc          <  2:322393/150‑1 (MQ=255)                                                                                                                                     ttCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAGCCGTTTCCAGCACCGGCGCCGTCCGCGGTTCGGTCAGCGGCGTACCGACATACAGGTAGCCGATCAGc       <  1:658241/150‑1 (MQ=255)                                                                                                                                          ccgcgaagaggccGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAGCCGTTTCCAGCACCGGCGCCGTCCGCGGTTCGGTCAGCGGCGTACCGACATACAGGTAGCCGATCAGctcctc  >  2:136126‑M2/14‑150 (MQ=255)                                                                                                                                                       |                                                                                                                                         GGTGGGTTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCG‑GGTAAACCCGCTCCTACAGGGGATGTGGATGCTGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAGCCGTTTCCAGCACCGGCGCCGTCCGCGGTTCGGTCAGCGGCGTACCGACATACAGGTAGCCGATCAGCTCCTC  >  NC_002947/5119562‑5119847

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.