New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5168706 =	29 (0.980)	4 (0.140)	4/236	NT	11.8%	coding (276/1365 nt)	PP_4547	glutamine synthetase
	?	NC_002947	5168744 =	32 (1.130)					coding (314/1365 nt)	PP_4547	glutamine synthetase

TCACCTGCACTGCGGCGGTGGGCACCCGGCGCCAGGGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5168746‑5168706 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaggTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCATGTGCTGCTGCGCACCATCGAAGCGTTGAAGGCCGATGGTTATCACCCGGTGATGGCCT  >  NC_002947/5168744‑5168854                                                                                                                                                          TCACCTGCACTGCGGCGGTGGGCACCCGGCGCCAGGGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCA                                                                                >  1:339964/1‑74 TCACCTGCACTGCGGCGGTGGGCACCCGGCGCCAGGGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCA                                                                                <  2:339964/74‑1   ACCTGCACTGCGGCGGTGGGCACCCGGCGCCAGGGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCATGTGCTGCTGCGCACCATCTAAGCGTTGAAGGCCGATGGTTATCACCCGGTGATGGCCT  >  2:139528/1‑150   ACCTGCACTGCGGCGGTGGGCACCCGGCGCCAGGGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCATGTGCTGCTGCGCACCAGCTAAGCGTTGAAGGCCGATGGTTATCACCCGGTGATGGCCT  <  1:139528/150‑1                                                                                                                                                          TCACCTGCACTGCGGCGGTGGGCACCCGGCGCCAGGGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5168746‑5168706 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaggTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCATGTGCTGCTGCGCACCATCGAAGCGTTGAAGGCCGATGGTTATCACCCGGTGATGGCCT  >  NC_002947/5168744‑5168854

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.