New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5168706 =	29 (0.980)	4 (0.140)	4/236	NT	11.8%	coding (276/1365 nt)	PP_4547	glutamine synthetase
	?	NC_002947	5168744 =	32 (1.130)					coding (314/1365 nt)	PP_4547	glutamine synthetase

CACCATCCTTGGCCTGACCCTCAACGGCGACGACGTGGAAAACTCCGGCCTGGTGTGGGACGTCGGCGACATCGACTGCCGTGCCTACCCGCTTGACGGCAGCCTGGTGCGCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCATGTGCTGCTGCGCACCATCGAAGCGTTGAAGGCCGATGGTTATCACCCGGTGATGGCCTGCGAGCTGGAGTTCTACCTGCTCGACCAGCAGCGTGATG  >  NC_002947/5168595‑5168893                                                                                                                                                      |                                                                                                                                                      aggccatcaccgggtgataaccatcggccttcaacgcttagctggtgcgcagcagcacatggcgtgggtccgcgatgctggccggcagaccctcgctggggtgcatgctcaCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGt                                                                                                                                                       <  1:139528‑M1/39‑1 (MQ=255) aggccatcaccgggtgataaccatcggccttcaacgcttagatggtgcgcagcagcacatggcgtgggtccgcgatgctggccggcagaccctcgctggggtgcatgctcaCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGt                                                                                                                                                       >  2:139528‑M1/112‑150 (MQ=255)   ccATCCTTGGTCTGATCATCAAGGGCACCAACGTCGCAACCTCCGGCCTGGTGTGGGACGTCGGCGACATCGACTGCCGTGCCTACCCGCTTGTCGGCAGCCTGGTGCGCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGa                                                                                                                                                     <  2:130649/150‑1 (MQ=255)   ccATCCTTGGCCTGACCCTCAACGGCGACGACGTGGAAAACTCCGGCCTGGTGTGGGACGTCGGCGACATCGACTGCCGTGCCTACCCGCTTGACGGCAGCCTGGTGCGCCTGCCCTGGCGCCGGGTGCCAACCTCCGCAGTTCATGTGa                                                                                                                                                     <  2:593231/150‑1 (MQ=255)                                gacgTGGAAAACTCCGGCCTGGTGTGGGACGTCGGCGACATCGACTGCCGTGCCTACCCGCTTGACGGCAGCCTGGTGCGCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGcc                                                                                                                        <  2:599055/150‑1 (MQ=255)                                   gTGGAAAACTCCGGCCTGGTGTGGGACGTCGGCGACATCGACTGCCGTGCCTACCCGCTTGACGGCAGCCTGGTGCGCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGc                                                                                                                     >  1:279968/1‑150 (MQ=255)                                      gAAAACTCCGGCCTGGTGTGGGACGTCGGCGACATCGACTGCCGTGCCTACCCGCTTGACGGCAGCCTGGTGCGCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATc                                                                                                                  >  2:297329/1‑150 (MQ=255)                                       aaaaCTCCGGCCTGGTGTGGGACGTCGGCGACATCGACTGCCGTGCCTACCCGCTTGACGGCAGCCTGGTGCGCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATcg                                                                                                                 >  2:254888/1‑150 (MQ=255)                                           cTCCGGCCTGGTGTGGGACGTCGGCGACATCGACTGCCGTGCCTACCCGCTTGACGGCAGCCTGGTGCGCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCa                                                                                                                                         <  2:74563/122‑1 (MQ=255)                                           cTCCGGCCTGGTGTGGGACGTCGGCGACATCGACTGCCGTGCCTACCCGCTTGACGGCAGCCTGGTGCGCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCa                                                                                                                                         >  1:74563/1‑122 (MQ=255)                                                  cTGGTGTGGGACGTCGGCGACATCGACTGCCGTGCCTACCCGCTTGACGGCAGCCTGGTGCGCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGc                                                                                                      <  1:659991/150‑1 (MQ=255)                                                   tGGTGTGGGACGTCGGCGACATCGACTGCCGTGCCTACCCGCTTGACGGCAGCCTGGTGCGCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGcc                                                                                                     >  1:501695/1‑150 (MQ=255)                                                     gggtgGGACGTCGGCGACATTGACTGCCGTGCCTACCCGCTTGACGGCAACCTGGTGCGCCTGTCCTGGCGCCGGTTGCCCACCGCCGCATTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCAt                                                                                                   <  2:148299/148‑1 (MQ=255)                                                               tCGGCGACATCGACTGCCGTGCCTACCCGCTTGACGGCAGCCTGGTGCGCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCCGCATCGCGGACCCACGCCATGtgctgctgc                                                                                         <  1:743939/150‑1 (MQ=255)                                                                    gACATCGACTGCCGTGCCTACCCGCTTGACGGCAGCCTGGTGCGCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCATGTGCTGCTGCGCAcc                                                                                    >  1:587799/1‑150 (MQ=255)                                                                    gACATCGACTGCCGTGCCTACCCGCTTGACGGCAGCCTGGTGCGCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCATGTGCTGCTGCGCAcc                                                                                    >  1:90211/1‑150 (MQ=255)                                                                            cTGCCGTGCCTACCCGCTTGACGGCAGCCTGGTGCGCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCATGTGCTGCTGCGCACCATCGAAGc                                                                            <  1:175040/150‑1 (MQ=255)                                                                               tggccggcagaccctcgctggggtgcatgctcaCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGa                                                                                                                                                     >  1:339964‑M1/34‑74 (MQ=255)                                                                               tggccggcagaccctcgctggggtgcatgctcaCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGa                                                                                                                                                     <  2:339964‑M1/41‑1 (MQ=255)                                                                                  tgcctgccCGCTTGACGGCAGCCTGGTGCGCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCATCTGCTGCTGCGCACCATCGAAGCGTTGaa                                                                      <  1:108138/150‑1 (MQ=255)                                                                                  tGCCTACCCGCTTGACGGCAGCCTGGTGCGCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGGCCCACGCCATGTGCTGCTGCGCACCATCGAAGCGTTGaa                                                                      <  2:316314/150‑1 (MQ=255)                                                                                    ccTACCCGCTTGACGGCAGCCTGGTGCGCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCATGTGCTGCTGCGCACCATCGAAGCGTTGAAgg                                                                    <  1:254888/150‑1 (MQ=255)                                                                                         ccGCTTGACGGCAGCCTGGTGCGCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCATGTGCTGCTGCGCACCATCGAAGCg                                                                           <  1:634763/138‑1 (MQ=255)                                                                                         ccGCTTGACGGCAGCCTGGTGCGCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCATGTGCTGCTGCGCACCATCGAAGCg                                                                           >  2:634763/1‑138 (MQ=255)                                                                                          cGCTTGACGGCAGCCTGGTGCGCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCATGTGCTGCTGCGCACCATCGAAGCGTTGAAGGCCGATg                                                              <  1:788150/150‑1 (MQ=255)                                                                                                aCGGCAGCCTGGTGCGCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCATGTGCTGCTGCGCACCATCGAAGCGTTGAAGGCCGATGGTTATc                                                        <  1:130920/150‑1 (MQ=255)                                                                                                       ccTGGTGCGCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCATGTGCTGCTGCGCACCATCGAAGCGTTGAAGGCCGATGGTTATCACCCGGt                                                 >  1:448621/1‑150 (MQ=255)                                                                                                          ggTGCGCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCATGTGCTGCTGCGCACCATCGAAGCGTTGAAGGCCGATGGTTATCACCCGGTGAt                                              >  2:1478/1‑150 (MQ=255)                                                                                                           gTGCGCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCATGTGCTGCTGCGCACCATCGAAGCGTTGAAGGCCGATGGTTATCACCCGGTGATg                                             <  2:279968/150‑1 (MQ=255)                                                                                                             tcacctgcactgcggcggtgggcacccggcgccagggcaggTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCa                                                                                                                       >  1:339964‑M2/42‑74 (MQ=255)                                                                                                             tcacctgcactgcggcggtgggcacccggcgccagggcaggTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCa                                                                                                                       <  2:339964‑M2/33‑1 (MQ=255)                                                                                                               gcCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCATGTGCTGCTGCGCACCATc                                                                                 >  2:237320/1‑110 (MQ=255)                                                                                                               gcCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCATGTGCTGCTGCGCACCATc                                                                                 <  1:237320/110‑1 (MQ=255)                                                                                                               acctgcactgcggcggtgggcacccggcgccagggcaggTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCATGTGCTGCTGCGCACCATCTAAGCGTTGAAGGCCGATGGTTATCACCCGGTGATGGCCt                                         >  2:139528‑M2/40‑150 (MQ=255)                                                                                                               acctgcactgcggcggtgggcacccggcgccagggcaggTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCATGTGCTGCTGCGCACCAGCTAAGCGTTGAAGGCCGATGGTTATCACCCGGTGATGGCCt                                         <  1:139528‑M2/111‑1 (MQ=255)                                                                                                                     ccTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCATGTGCTGCTGCGCACCATCGAAGCGTTGaa                                                                      <  2:108742/115‑1 (MQ=255)                                                                                                                     ccTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCATGTGCTGCTGCGCACCATCGAAGCGTTGaa                                                                      >  1:108742/1‑115 (MQ=255)                                                                                                                     ccTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCATGTGCTGCTGCGCACCATCGAAGCGTTGAAGGCCGATGGTTATCACCCGGCGATGGCCTGCGAGc                                   >  2:719139/1‑150 (MQ=255)                                                                                                                     ccTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCATGTGCTGCTGCGCACCATCGAAGCGTTGAAGGCCGATGGTTATCACCCGGCGATGGCCTGCGAGc                                   >  2:719076/1‑150 (MQ=255)                                                                                                                       tGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCATGTGCTGCTGCGCACCATCGAAGCGTTGAAGGCCGATGGTTATCACCCGGTGATGGCCTGCGAGCTg                                 >  1:554703/1‑150 (MQ=255)                                                                                                                                gTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCAAGCAATGTGCTGCTGCGCACCATCGAAGCGTTGAAGGCCGATGGTTATCACCCGGTGATGGCCTGCGAGCTGGAGTTCTAc                        <  1:297329/150‑1 (MQ=255)                                                                                                                                      aCCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCATGTGCTGCTGCGCACCATCGAAGCGTTGAAGGCCGATGGTTATCACCCGGTGATGGCCTGCGAGCTGGAGTTCTACCTGCTc                  >  1:135197/1‑150 (MQ=255)                                                                                                                                            gcAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCATGTGCTGCTGCGCACCATCGAAGCGTTGAAGGCCGATGGTTATCACCCGGTGATGGCCTGCGAGCTGGAGTTCTACCTGCTCGACcag            <  2:448621/150‑1 (MQ=255)                                                                                                                                            gcAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCATGTGCTGCTGCGCACCATCGAAGCGTTGAAGGCCGATGGTTATCACCCGGTGATGGCCTGCGAGCTGGAGTTCTACCTGCTCGACcag            <  1:1478/150‑1 (MQ=255)                                                                                                                                                      tGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCATGTGCTGCTGCGCACCATCGAAGCGTTGAAGGCCGATGGTTATCACCCGGTGATGGCCTGCGAGCTGGAGTTCTACCTGCTCGACCAGCAGCGTGATg  <  2:501695/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                      CACCATCCTTGGCCTGACCCTCAACGGCGACGACGTGGAAAACTCCGGCCTGGTGTGGGACGTCGGCGACATCGACTGCCGTGCCTACCCGCTTGACGGCAGCCTGGTGCGCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCATGTGCTGCTGCGCACCATCGAAGCGTTGAAGGCCGATGGTTATCACCCGGTGATGGCCTGCGAGCTGGAGTTCTACCTGCTCGACCAGCAGCGTGATG  >  NC_002947/5168595‑5168893

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.