New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5168706 =	29 (0.980)	4 (0.140)	4/236	NT	11.8%	coding (276/1365 nt)	PP_4547	glutamine synthetase
	?	NC_002947	5168744 =	32 (1.130)					coding (314/1365 nt)	PP_4547	glutamine synthetase

TGGCCGTGTACCAGACAGGCCGGCCACTGCCCAGCACCATCCTTGGCCTGACCCTCAACGGCGACGACGTGGAAAACTCCGGCCTGGTGTGGGACGTCGGCGACATCGACTGCCGTGCCTACCCGCTTGACGGCAGCCTGGTGCGCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCATGTGCTGCTGCGCACCATCGAAGCGTTGAAGGCCGATGGTTATCACCCGGTGATG  >  NC_002947/5168561‑5168850                                                                                                                                                  |                                                                                                                                                 tgGCCGTGTACCAGACAGGCCGGCCACTGCCCAGCACCATCCTTGGCCTGACCCTCAACGGCGACGACGTGGAAAACCCCGGCCTGATATGGCAAGTCTGCTCCATCGACTGCCGTGCCTACCCGCTTGACGGCCCCCTGGTGCGCCTGc                                                                                                                                              >  2:108138/1‑150 (MQ=255)    ccGTGTACCAGACAGGCCGGCCACTGCCCAGCACCATCCTTGGCCTGACCCTCAACGGCGACGACGTGGAAAACTCCGGCCGGGTGTGGGACGTCGGCGACATCGACTGCCGTGCCTCCCCGCTTGACGGCAAGCTGGTGCGCCTGCCCt                                                                                                                                           >  1:242754/1‑150 (MQ=255)     cGTGTACCAGACAGGCCGGCCACTGCCCAGCACCATCCTTGGCCTGACCCTCAACGGCGACGACGTGGAAAACTCCGGCCTGGTGTGGGACGTCGGCGACATCGACTGCCGTGCCTAGCCGCTGGAGGTCAGCCTGGTGCGCCTACCCta                                                                                                                                          >  2:130920/1‑149 (MQ=255)           ccAGACAGGCCGGCCACTGCCCAGCACCATCCTTGGCCTGACCCTCAACGGCGACGACGTGGAAAACTCCGGCCTGGTGTGGGACGTCGGCGACATCGACTGCCGTGCCTACCCGCTTGACGGCAGCCTGGTGCGCCTGCCCTGGCGCCg                                                                                                                                    >  1:104493/1‑150 (MQ=255)                 aGGCCGGCCACTGCCCAGCACCATCCTTGGCCTGACCCTCAACGGCGACGACGTGGAAAACTCCGGCCTGGTGTGGGACGTCGGCGACATCGACTGCCGTGCCTACCCGCTTGACGGCAGCCTGGTGCGCCTGCCCTGGCGCCGGGTGcc                                                                                                                              <  2:466021/150‑1 (MQ=255)                                 aGCACCATCCTTGGCCTGACCCTCAACGGCGACGACGTGGAAAACTCCGGCCTGGTGTGGGACGTCGGCGACATCGACTGCCGTGCCTACCCGCTTGACGGCAGCCTGGTGCGCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAg                                                                                                              <  2:104493/150‑1 (MQ=255)                                   aggccatcaccgggtgataaccatcggccttcaacgcttagctggtgcgcagcagcacatggcgtgggtccgcgatgctggccggcagaccctcgctggggtgcatgctcaCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGt                                                                                                            <  1:139528‑M1/39‑1 (MQ=255)                                   aggccatcaccgggtgataaccatcggccttcaacgcttagatggtgcgcagcagcacatggcgtgggtccgcgatgctggccggcagaccctcgctggggtgcatgctcaCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGt                                                                                                            >  2:139528‑M1/112‑150 (MQ=255)                                     ccATCCTTGGTCTGATCATCAAGGGCACCAACGTCGCAACCTCCGGCCTGGTGTGGGACGTCGGCGACATCGACTGCCGTGCCTACCCGCTTGTCGGCAGCCTGGTGCGCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGa                                                                                                          <  2:130649/150‑1 (MQ=255)                                     ccATCCTTGGCCTGACCCTCAACGGCGACGACGTGGAAAACTCCGGCCTGGTGTGGGACGTCGGCGACATCGACTGCCGTGCCTACCCGCTTGACGGCAGCCTGGTGCGCCTGCCCTGGCGCCGGGTGCCAACCTCCGCAGTTCATGTGa                                                                                                          <  2:593231/150‑1 (MQ=255)                                                                  gacgTGGAAAACTCCGGCCTGGTGTGGGACGTCGGCGACATCGACTGCCGTGCCTACCCGCTTGACGGCAGCCTGGTGCGCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGcc                                                                             <  2:599055/150‑1 (MQ=255)                                                                     gTGGAAAACTCCGGCCTGGTGTGGGACGTCGGCGACATCGACTGCCGTGCCTACCCGCTTGACGGCAGCCTGGTGCGCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGc                                                                          >  1:279968/1‑150 (MQ=255)                                                                        gAAAACTCCGGCCTGGTGTGGGACGTCGGCGACATCGACTGCCGTGCCTACCCGCTTGACGGCAGCCTGGTGCGCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATc                                                                       >  2:297329/1‑150 (MQ=255)                                                                         aaaaCTCCGGCCTGGTGTGGGACGTCGGCGACATCGACTGCCGTGCCTACCCGCTTGACGGCAGCCTGGTGCGCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATcg                                                                      >  2:254888/1‑150 (MQ=255)                                                                             cTCCGGCCTGGTGTGGGACGTCGGCGACATCGACTGCCGTGCCTACCCGCTTGACGGCAGCCTGGTGCGCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCa                                                                                              <  2:74563/122‑1 (MQ=255)                                                                             cTCCGGCCTGGTGTGGGACGTCGGCGACATCGACTGCCGTGCCTACCCGCTTGACGGCAGCCTGGTGCGCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCa                                                                                              >  1:74563/1‑122 (MQ=255)                                                                                    cTGGTGTGGGACGTCGGCGACATCGACTGCCGTGCCTACCCGCTTGACGGCAGCCTGGTGCGCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGc                                                           <  1:659991/150‑1 (MQ=255)                                                                                     tGGTGTGGGACGTCGGCGACATCGACTGCCGTGCCTACCCGCTTGACGGCAGCCTGGTGCGCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGcc                                                          >  1:501695/1‑150 (MQ=255)                                                                                       gggtgGGACGTCGGCGACATTGACTGCCGTGCCTACCCGCTTGACGGCAACCTGGTGCGCCTGTCCTGGCGCCGGTTGCCCACCGCCGCATTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCAt                                                        <  2:148299/148‑1 (MQ=255)                                                                                                 tCGGCGACATCGACTGCCGTGCCTACCCGCTTGACGGCAGCCTGGTGCGCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCCGCATCGCGGACCCACGCCATGtgctgctgc                                              <  1:743939/150‑1 (MQ=255)                                                                                                      gACATCGACTGCCGTGCCTACCCGCTTGACGGCAGCCTGGTGCGCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCATGTGCTGCTGCGCAcc                                         >  1:90211/1‑150 (MQ=255)                                                                                                      gACATCGACTGCCGTGCCTACCCGCTTGACGGCAGCCTGGTGCGCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCATGTGCTGCTGCGCAcc                                         >  1:587799/1‑150 (MQ=255)                                                                                                              cTGCCGTGCCTACCCGCTTGACGGCAGCCTGGTGCGCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCATGTGCTGCTGCGCACCATCGAAGc                                 <  1:175040/150‑1 (MQ=255)                                                                                                                 tggccggcagaccctcgctggggtgcatgctcaCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGa                                                                                                          >  1:339964‑M1/34‑74 (MQ=255)                                                                                                                 tggccggcagaccctcgctggggtgcatgctcaCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGa                                                                                                          <  2:339964‑M1/41‑1 (MQ=255)                                                                                                                    tgcctgccCGCTTGACGGCAGCCTGGTGCGCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCATCTGCTGCTGCGCACCATCGAAGCGTTGaa                           <  1:108138/150‑1 (MQ=255)                                                                                                                    tGCCTACCCGCTTGACGGCAGCCTGGTGCGCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGGCCCACGCCATGTGCTGCTGCGCACCATCGAAGCGTTGaa                           <  2:316314/150‑1 (MQ=255)                                                                                                                      ccTACCCGCTTGACGGCAGCCTGGTGCGCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCATGTGCTGCTGCGCACCATCGAAGCGTTGAAgg                         <  1:254888/150‑1 (MQ=255)                                                                                                                           ccGCTTGACGGCAGCCTGGTGCGCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCATGTGCTGCTGCGCACCATCGAAGCg                                <  1:634763/138‑1 (MQ=255)                                                                                                                           ccGCTTGACGGCAGCCTGGTGCGCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCATGTGCTGCTGCGCACCATCGAAGCg                                >  2:634763/1‑138 (MQ=255)                                                                                                                            cGCTTGACGGCAGCCTGGTGCGCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCATGTGCTGCTGCGCACCATCGAAGCGTTGAAGGCCGATg                   <  1:788150/150‑1 (MQ=255)                                                                                                                                  aCGGCAGCCTGGTGCGCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCATGTGCTGCTGCGCACCATCGAAGCGTTGAAGGCCGATGGTTATc             <  1:130920/150‑1 (MQ=255)                                                                                                                                         ccTGGTGCGCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCATGTGCTGCTGCGCACCATCGAAGCGTTGAAGGCCGATGGTTATCACCCGGt      >  1:448621/1‑150 (MQ=255)                                                                                                                                            ggTGCGCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCATGTGCTGCTGCGCACCATCGAAGCGTTGAAGGCCGATGGTTATCACCCGGTGAt   >  2:1478/1‑150 (MQ=255)                                                                                                                                             gTGCGCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCATGTGCTGCTGCGCACCATCGAAGCGTTGAAGGCCGATGGTTATCACCCGGTGATg  <  2:279968/150‑1 (MQ=255)                                                                                                                                                 gcCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCATGTGCTGCTGCGCACCATc                                      >  2:237320/1‑110 (MQ=255)                                                                                                                                                 gcCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCATGTGCTGCTGCGCACCATc                                      <  1:237320/110‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                 TGGCCGTGTACCAGACAGGCCGGCCACTGCCCAGCACCATCCTTGGCCTGACCCTCAACGGCGACGACGTGGAAAACTCCGGCCTGGTGTGGGACGTCGGCGACATCGACTGCCGTGCCTACCCGCTTGACGGCAGCCTGGTGCGCCTGCCCTGGCGCCGGGTGCCCACCGCCGCAGTGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCATGTGCTGCTGCGCACCATCGAAGCGTTGAAGGCCGATGGTTATCACCCGGTGATG  >  NC_002947/5168561‑5168850

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.