New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5335031 | 22 (0.740) | 5 (0.170) | 5/238 | NT | 17.2% | coding (1413/2976 nt) | PP_4695 | two‑component system sensor histidine kinase |
? | NC_002947 | = 5335072 | 27 (0.940) | coding (1454/2976 nt) | PP_4695 | two‑component system sensor histidine kinase |
TGGCCAACCGCCAACCGCCGCGGTTTCATCGCCGGGCTGCTGGCCGGCACCCTGGTGTGGATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5334882‑5335031 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagc‑AGCACGTTGGCCGCCAACGAGGCGATGGCGGCCATGTGCCAGCTGGT < NC_002947/5335072‑5335026 TGGCCAACCGCCAACCGCCGCGGTTTCATCGCCGGGCTGCTGGCCGGCACCCTGGTGTGGATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGC > 1:370922/1‑150 GCCAACCGCCAACCGCCGCGGTTTCATCGCCGGGCTGCTGGCCGGCACCCTGGTGTGGATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCgg > 1:272214/1‑148 CGCGGTTTCATCGCCGGGCTGCTGGCCGGCACCCTGGTGTGGATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAG < 1:757378/131‑1 CGCGGTTTCATCGCCGGGCTGCTGGCCGGCACCCTGGTGTGGATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAG > 2:757378/1‑131 CCGGGCTGCTGGCCGGCACCCTGGTGTGGATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACGTTGGCCGCCAACGAGGCGATGGCG < 1:783083/150‑1 CCTGGTGTGGATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGC‑AGCACGTTGGCCGCCAACGAGGCGATGGCGGCCATGTGCCAGCTGGT < 1:61622/147‑1 CCTGGTGTGGATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGC‑AGCACGTTGGCCGCCAACGAGGCGATGGCGGCCATGTGCCAGCTGGT > 2:61622/1‑147 GCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGC‑AGCACGTTGGCCGCCAACGAGGCGATGGCGG > 1:791715/1‑104 GCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGC‑AGCACGTTGGCCGCCAACGAGGCGATGGCGG < 2:791715/104‑1 TGGCCAACCGCCAACCGCCGCGGTTTCATCGCCGGGCTGCTGGCCGGCACCCTGGTGTGGATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5334882‑5335031 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagc‑AGCACGTTGGCCGCCAACGAGGCGATGGCGGCCATGTGCCAGCTGGT < NC_002947/5335072‑5335026 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |