New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5335031	22 (0.740)	5 (0.170)	5/238	NT	17.2%	coding (1413/2976 nt)	PP_4695	two‑component system sensor histidine kinase
	?	NC_002947	= 5335072	27 (0.940)					coding (1454/2976 nt)	PP_4695	two‑component system sensor histidine kinase

TGGCCAACCGCCAACCGCCGCGGTTTCATCGCCGGGCTGCTGGCCGGCACCCTGGTGTGGATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAGCT  >  NC_002947/5334882‑5335177                                                                                                                                                      |                                                                                                                                                   tGGCCAACCGCCAACCGCCGCGGTTTCATCGCCGGGCTGCTGGCCGGCACCCTGGTGTGGATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGC                                                                                                                                                    >  1:370922‑M1/1‑150 (MQ=255)   gccaaccgccaaccGCCGCGGTTTCATCGCCGGGCTGCTGGCCGGCACCCTGGTGTGGATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCgg                                                                                                                                                  >  1:272214‑M1/1‑148 (MQ=255)                  ccgcGGTTTCATCGCCGGGCTGCTGGCCGGCACCCTGGTGTGGATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCAt                                                                                                                                   >  2:168719/1‑150 (MQ=255)                   cgcgGTTTCATCGCCGGGCTGCTGGCCGGCACCCTGGTGTGGATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCCGATGGCACATGGCCGCCATc                                                                                                                                  >  1:295572/1‑150 (MQ=255)                                ccGGGCTGCTGGCCGGCACCCTGGTGTGGATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCtggcacgttggccgccaacgaggcgatggcg                                                                                                                     <  1:783083‑M1/150‑32 (MQ=255)                                                   ccTGGTGTGGATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCagcacgttggccgccaacgaggcgatggcggccatgtgccagctggt                                                                                                     >  2:61622‑M1/1‑100 (MQ=255)                                                   ccTGGTGTGGATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCagcacgttggccgccaacgaggcgatggcggccatgtgccagctggt                                                                                                     <  1:61622‑M1/147‑48 (MQ=255)                                                            gATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCAccc                                                                                                >  2:130090/1‑143 (MQ=255)                                                            gATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCAccc                                                                                                <  1:130090/143‑1 (MQ=255)                                                            gATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGAtctc                                                                                         >  2:621989/1‑150 (MQ=255)                                                                  gACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGAGACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGtt                                                                                   >  1:253649/1‑150 (MQ=255)                                                                      aTGCTGCTTCCGCGTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACTACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGACCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCAcc                                                                               >  2:96259/1‑150 (MQ=255)                                                                             tgcCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCa                                                                        >  1:343192/1‑150 (MQ=255)                                                                              gcCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCagcacgttggccgccaacgaggcgatggcgg                                                                                                                     >  1:791715‑M1/1‑73 (MQ=255)                                                                              gcCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCagcacgttggccgccaacgaggcgatggcgg                                                                                                                     <  2:791715‑M1/104‑32 (MQ=255)                                                                               ccGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGc                                                                      >  1:267554/1‑150 (MQ=255)                                                                                      tcGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAACACCGAag                                                               >  1:431999/1‑150 (MQ=255)                                                                                        ggCAACTTGCAGGTTTGCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAagag                                                             <  2:618265/150‑1 (MQ=255)                                                                                        ggCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAagag                                                             <  1:621989/150‑1 (MQ=255)                                                                                         gCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCa                                                                                                   <  1:158595/111‑1 (MQ=255)                                                                                         gCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCa                                                                                                   >  2:158595/1‑111 (MQ=255)                                                                                               tGCAGGGTTTCTACATCCAGCTGCCGCACATGATCTATGTGCTGGACGACACCATCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTg                                                      <  2:370922/150‑1 (MQ=255)                                                                                                gCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGt                                                       <  2:291481/148‑1 (MQ=255)                                                                                                gCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGt                                                       >  1:291481/1‑148 (MQ=255)                                                                                                                                      tgCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCcac               >  1:180501/1‑150 (MQ=255)                                                                                                                                      tgCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCcac               <  1:168719/150‑1 (MQ=255)                                                                                                                                            acgacACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGcgcc         <  2:343192/150‑1 (MQ=255)                                                                                                                                             cgacACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGcgccg        >  2:741785/1‑150 (MQ=255)                                                                                                                                                 acCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTgctggtgtcgtccagcacatagatcatgtccagcagcgggatgtagaaaccctgcaagttgccgagaagcggcagcagcatggtcaccatccacaccagg       >  2:61622‑M2/1‑47 (MQ=255)                                                                                                                                                 acCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTgctggtgtcgtccagcacatagatcatgtccagcagcgggatgtagaaaccctgcaagttgccgagaagcggcagcagcatggtcaccatccacaccagg       <  1:61622‑M2/147‑101 (MQ=255)                                                                                                                                                 acCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAg    >  2:625387/1‑150 (MQ=255)                                                                                                                                                   cAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAGCt  >  2:354730/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                   TGGCCAACCGCCAACCGCCGCGGTTTCATCGCCGGGCTGCTGGCCGGCACCCTGGTGTGGATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAGCT  >  NC_002947/5334882‑5335177

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.