New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5335031	22 (0.740)	5 (0.170)	5/238	NT	17.2%	coding (1413/2976 nt)	PP_4695	two‑component system sensor histidine kinase
	?	NC_002947	= 5335072	27 (0.940)					coding (1454/2976 nt)	PP_4695	two‑component system sensor histidine kinase

GATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAGCTGCACGCCGCCTCGCCGCAGGAATTCGCCACCCAGCTGGCCAAGC  >  NC_002947/5334941‑5335221                                                                                                                                    |                                                                                                                                                      gATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCAccc                                                                                                                                            <  1:130090/143‑1 (MQ=255) gATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCAccc                                                                                                                                            >  2:130090/1‑143 (MQ=255) gATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGAtctc                                                                                                                                     >  2:621989/1‑150 (MQ=255)       gACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGAGACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGtt                                                                                                                               >  1:253649/1‑150 (MQ=255)           aTGCTGCTTCCGCGTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACTACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGACCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCAcc                                                                                                                           >  2:96259/1‑150 (MQ=255)                  tgcCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCa                                                                                                                    >  1:343192/1‑150 (MQ=255)                    ccGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGc                                                                                                                  >  1:267554/1‑150 (MQ=255)                           tcGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAACACCGAag                                                                                                           >  1:431999/1‑150 (MQ=255)                             ggCAACTTGCAGGTTTGCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAagag                                                                                                         <  2:618265/150‑1 (MQ=255)                             ggCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAagag                                                                                                         <  1:621989/150‑1 (MQ=255)                              gCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCa                                                                                                                                               >  2:158595/1‑111 (MQ=255)                              gCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCa                                                                                                                                               <  1:158595/111‑1 (MQ=255)                                    tGCAGGGTTTCTACATCCAGCTGCCGCACATGATCTATGTGCTGGACGACACCATCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTg                                                                                                  <  2:370922/150‑1 (MQ=255)                                     gCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGt                                                                                                   <  2:291481/148‑1 (MQ=255)                                     gCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGt                                                                                                   >  1:291481/1‑148 (MQ=255)                                                                           tgCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCcac                                                           >  1:180501/1‑150 (MQ=255)                                                                           tgCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCcac                                                           <  1:168719/150‑1 (MQ=255)                                                                                 acgacACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGcgcc                                                     <  2:343192/150‑1 (MQ=255)                                                                                  cgacACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGcgccg                                                    >  2:741785/1‑150 (MQ=255)                                                                                      acCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTgctggtgtcgtccagcacatagatcatgtccagcagcgggatgtagaaaccctgcaagttgccgagaagcggcagcagcatggtcaccatccacaccagg                                                   >  2:61622‑M2/1‑47 (MQ=255)                                                                                      acCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTgctggtgtcgtccagcacatagatcatgtccagcagcgggatgtagaaaccctgcaagttgccgagaagcggcagcagcatggtcaccatccacaccagg                                                   <  1:61622‑M2/147‑101 (MQ=255)                                                                                      acCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAg                                                >  2:625387/1‑150 (MQ=255)                                                                                        cAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAGCt                                              >  2:354730/1‑150 (MQ=255)                                                                                                acaTGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAGCTGCAcgccg                                      >  2:164658/1‑150 (MQ=255)                                                                                                      ccgccATCGCCTCGTTGGCGGCCAACGTGCTgctggtgtcgtccagcacatagatcatgtccagcagcgggatgtagaaaccctgcaagttgccgagaagcggc                                                                              >  1:791715‑M2/1‑31 (MQ=255)                                                                                                      ccgccATCGCCTCGTTGGCGGCCAACGTGCTgctggtgtcgtccagcacatagatcatgtccagcagcgggatgtagaaaccctgcaagttgccgagaagcggc                                                                              <  2:791715‑M2/104‑74 (MQ=255)                                                                                                       cgccATCGCCTCGTTGGCGGCCAACGTGCCagctggtgtcgtccagcacatagatcatgtccagcagcgggatgtagaaaccctgcaagttgccgagaagcggcagcagcatggtcaccatccacaccagggtgccggccagcagcccgg                               <  1:783083‑M2/150‑121 (MQ=255)                                                                                                          cATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAGCTGCACGCCGCCTCGCCGCa                            <  2:253649/150‑1 (MQ=255)                                                                                                          cATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAGCTGCACGCCGCCTCGCCGCa                            >  1:12250/1‑150 (MQ=255)                                                                                                              gCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCGCTGGCCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAGCTGCACGCCGCCTCGCCGCAGGaa                        <  1:407551/150‑1 (MQ=255)                                                                                                               ccTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCt                                                                                      <  2:557053/87‑1 (MQ=255)                                                                                                               ccTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCt                                                                                      >  1:557053/1‑87 (MQ=255)                                                                                                                            cAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAGCTGCACGCCGCCTCGCCGCAGGAATTCGCCACCCAGCt          >  1:228253/1‑150 (MQ=255)                                                                                                                              aCGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAGCTGCACGCCGCCTCGCCGCAGGAATTCGCCACCCAGCTgg        <  2:180501/150‑1 (MQ=255)                                                                                                                                    tgctgTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAGCTGCACGCCGCCTCGCCGCAGGAATTCGCCACCCAGCTGGCCAAGc  >  1:614799/1‑150 (MQ=255)                                                                                                                                    |                                                                                                                                                      GATGGTGACCATGCTGCTGCCGCTTCTCGGCAACTTGCAGGGTTTCTACATCCCGCTGCTGGACATGATCTATGTGCTGGACGACACCAGCTGGCACATGGCCGCCATCGCCTCGTTGGCGGCCAACGTGCTGCTGTTCACCCTGATCTCACTGTTCACCAACGCCAGCACCGAAGAGGTCAGTGCGGCCGAAGCCTGTGCCGTGGATAACGTGCGCCGCCCACAGCGCCGCGAGCTGCACGCCGCCTCGCCGCAGGAATTCGCCACCCAGCTGGCCAAGC  >  NC_002947/5334941‑5335221

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.