New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5455677 =	24 (0.810)	4 (0.150)	4/220	NT	15.9%	intergenic (‑37/+98)	PP_4792/PP_4793	hypothetical protein/hypothetical protein
	?	NC_002947	5455715 =	21 (0.800)					intergenic (‑75/+60)	PP_4792/PP_4793	hypothetical protein/hypothetical protein

GCTCAAGGACAAGAAACGCCCCGCCAGTACGGCGAGATCCAGGACGCTGCCACATCGCTAGCCGTTCAGGACGCCAGGCGCAGGCTATCGCGCGCCGGTTCTTCACTATCACACAACTCAAGATCGACGCCGGTACGCACTTGTTGACCGGCGTCGATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5455835‑5455677 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accggcgtcgatcTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGC‑GCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGTCCTGGATCTCGCCGTACTGGCGGGGCGTTTCTTGTCCTTGAGCCAGATGATCTTGGCCGATGTCGG  >  NC_002947/5455715‑5455858                                                                                                                                                                                                                                                                                                                  GCTCAAGGACAAGAAACGCCCCGCCAGTACGGCGAGATCCAGGACGCTGCCACATCGCTAGCCGTTCAGGACGCCAGGCGCAGGCTATCGCGCGCCGGTTCTTCACTATCACACAACTCAAGATCGACGCCGGTACGCACTTGTTGACCG                                                                                                                                                            >  2:377725/1‑150        GACAAGAAACGCCCCGCCAGTACGGCGAGATCCAGGACGCTGCCACATCGCTAGCCGTTCAGGACGCCAGGCGCAGGCTATCGCGCGCCGGTTCTTCACTATCACACAACTCAAGATCGACGCCGGTACGCACTTGTTGACCGGCGTCGA                                                                                                                                                     >  2:742196/1‑150                      CGCCAGTACGGCGAGATCCAGGACGCTGCCACATCGCTAGCCGTTCAGGACGCCAGGCGCAGGCTATCGCGCGCCGGTTCTTCACTATCACACAACTCAAGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTG                                                                                                                                       >  2:196388/1‑150                              CGGCGAGATCCAGGACGCTGCCACATCGCTAGCCGTTCAGGACGCCAGGCGCAGGCTATCGCGCGCCGGTTCTTCACTATCACACAACTCAAGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTGAA                                                                                                                               <  1:196388/150‑1                                                                                                                              GACGCCGGTACGCACTTGTTGACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGC‑GCCTGGCGTCCTGAACGGCTAGCGATGT                                                                            <  1:748121/104‑1                                                                                                                              GACGCCGGTACGCACTTGTTGACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGC‑GCCTGGCGTCCTGAACGGCTAGCGATGT                                                                            >  2:748121/1‑104                                                                                                                                                         GTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGC‑GCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGTCCTGGATCTCGCCGTACTGGCGGGGCGTTTCTTGTCCTTGAGCCAGATGATCTTGGCCGATGTCG   <  1:298796/150‑1                                                                                                                                                          TCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGGTCGAATGCAGCCTTG‑GGGCTGAACGGCTAGCGATGTGGCAGCGTCCTGGATCTCGCCGTACTGGCGGGGCGTTTCTTGTCCTTGAGCCAGATGATCTTGGCCGATGTCGG  <  2:20805/150‑1                                                                                                                                                              TCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGC‑GCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGTCCTGGATCTCGCCGTACTGGCGGGGCGT                                        >  1:184625/1‑108                                                                                                                                                              TCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGC‑GCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGTCCTGGATCTCGCCGTACTGGCGGGGCGT                                        <  2:184625/108‑1                                                                                                                                                                                                                                                                                                                  GCTCAAGGACAAGAAACGCCCCGCCAGTACGGCGAGATCCAGGACGCTGCCACATCGCTAGCCGTTCAGGACGCCAGGCGCAGGCTATCGCGCGCCGGTTCTTCACTATCACACAACTCAAGATCGACGCCGGTACGCACTTGTTGACCGGCGTCGATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5455835‑5455677 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accggcgtcgatcTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGC‑GCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGTCCTGGATCTCGCCGTACTGGCGGGGCGTTTCTTGTCCTTGAGCCAGATGATCTTGGCCGATGTCGG  >  NC_002947/5455715‑5455858

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.