| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5455677 = | 24 (0.810) | 4 (0.150) | 4/220 | NT | 15.9% | intergenic (‑37/+98) | PP_4792/PP_4793 | hypothetical protein/hypothetical protein |
| ? | NC_002947 | 5455715 = | 21 (0.800) | intergenic (‑75/+60) | PP_4792/PP_4793 | hypothetical protein/hypothetical protein | |||||
CGCCGCCAACCGGGGCCGCCGCGTACGCAGCCACCATGCCGCAAGCAGCAGCAAGAACAGCACGCCCGGCGGCATCAGCCATTGTTTGATGAAGAATCGGATCGGCATCGGCCACACCTCCTTGGCAGGCGTGCAGCCTAGAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGCGCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGTCCTGGATCTCGCCGTACTGGCGGGGCGTTTC > NC_002947/5455533‑5455823 | ccgacatcggccaagatcatctggctcaaggacaagaaacgccccgccagtacggcgagatccaggacgctgccacatcgctagccgttcagccccaaggctgcattcgaccgcgcgccggttcttcactatcacacaactcaaGATCGa < 2:20805‑M1/6‑1 (MQ=255) cgacatcggccaagatcatctggctcaaggacaagaaacgccccgccagtacggcgagatccaggacgctgccacatcgctagccgttcaggacgccaggcgcaggctatcgcgcgccggttcttcactatcacacaactcaaGATCGAc < 1:298796‑M1/7‑1 (MQ=255) aaCCGGGGCCGCCGCGTACGCAGCCACCATGCCGCAAGCAGCAGCAAGAACAGCACGCCCGGCGGCATCAGCCATTGTTTGATGAAGAATCGGATCGGCATCGGCCACACCTCCTTGGCAGGCGTGCAGCCTAGAAGGATCGACGCCGGt > 1:660565/1‑150 (MQ=255) gccgcGTACGCAGCCACCATGCCGCAAGCAGCAGCAAGAACAGCACGCCCGGCGGCATCAGCCATTGTTTGATGAAGAATCGGATCGGCATCGGCCACACCTCCTTGGCAGGCGTGCAGCCTAGAAGGATCGACGc < 1:259589/136‑1 (MQ=255) gccgcGTACGCAGCCACCATGCCGCAAGCAGCAGCAAGAACAGCACGCCCGGCGGCATCAGCCATTGTTTGATGAAGAATCGGATCGGCATCGGCCACACCTCCTTGGCAGGCGTGCAGCCTAGAAGGATCGACGc > 2:259589/1‑136 (MQ=255) acgccccgccagtacggcgagatccaggacgctgccacatcgctagccgttcaggacgccaggcgcaggctatcgcgcgccggttcttcactatcacacaactcaaGa > 1:184625‑M1/107‑108 (MQ=255) acgccccgccagtacggcgagatccaggacgctgccacatcgctagccgttcaggacgccaggcgcaggctatcgcgcgccggttcttcactatcacacaactcaaGa < 2:184625‑M1/2‑1 (MQ=255) cGCAAGCAGCAGCAAGAACAGCACGCCCGGCGGCATCAGCCATTGTTTGATGAAGAATCGGATCGGCATCGGCCACACCTCCTTGGCAGGCGTGCAGCCTAGAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGtt > 1:409515/1‑150 (MQ=255) caAGAACAGCACGCCCGGCGGCATCAGCCATTGTTTGATGAAGAATCGGATCGGCATCGGCCACACCTCCTTGGCAGGCGTGCAGCCTAGAAGGATCGACGCCGGTcaac < 2:302681/110‑1 (MQ=255) caAGAACAGCACGCCCGGCGGCATCAGCCATTGTTTGATGAAGAATCGGATCGGCATCGGCCACACCTCCTTGGCAGGCGTGCAGCCTAGAAGGATCGACGCCGGTcaac > 1:302681/1‑110 (MQ=255) aaGAACAGCACGCCCGGCGGCATCAGCCATTGTTTGATGAAGAATCGGATCGGCATCGGCCACACCTCCTTGGCAGGCGTGCAGCCTAGAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTgaa < 2:660565/150‑1 (MQ=255) cggcggCATCAGCCATTGTTTGATGAAGAATCGGATCGGCATCGGCCACACATCCTTGGAGTGCGTGCAGCCTAAAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGa > 1:696098/1‑150 (MQ=255) acatcgctagccgttcaggacgccaggcgcaggctatcgcgcgccggttcttcactatcacacaactcaaGATCGACGCCGGTCAACAAGTGCGTACCGGCGTc < 1:748121‑M1/34‑1 (MQ=255) acatcgctagccgttcaggacgccaggcgcaggctatcgcgcgccggttcttcactatcacacaactcaaGATCGACGCCGGTCAACAAGTGCGTACCGGCGTc > 2:748121‑M1/71‑104 (MQ=255) ccATTGTTTGATGAAGAATCGGATCGGCATCGGCCACACCTCCTTGGGAGGCGTGCAGCCTCGAAGGATGTGCGCCGGTCAACACGGGCGTACCGGCGTCGAGCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCGGCGCCt > 1:578096/1‑150 (MQ=255) aTTGTTTGATGAAGAATCGGATCGGCATCGGCCACACCTCCTTGGCAGGCGTGCAGCCTAGAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGCGCCTgg < 1:561573/150‑1 (MQ=255) atgaAGAATCTGATCGGCATCGGCCACACCTCCTTGGCGGGCGTGCAGCCTAGAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCg > 2:459780/1‑120 (MQ=255) atgaAGAATCTGATCGGCATCGGCCACACCTCCTTGGCAGGCGTGCAGCCTAGAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCg < 1:459780/120‑1 (MQ=255) tgaAGAATCGGATCGGCATCGGCCACACCTCCTTGGCAGGCGTGCAGCCTAGAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTg > 1:628037/1‑111 (MQ=255) tgaAGAATCGGATCGGCATCGGCCACACCTCCTTGGCAGGCGTGCAGCCTAGAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTg < 2:628037/111‑1 (MQ=255) gaagaaTCGGATCGGCATCGGCCACACCTCCTTGGCAGGCGTGCAGCCTAGAAGTATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGCGCCTGGCGTCCTGAAc > 2:298796/1‑150 (MQ=255) gcCACACCTCCTTGGCAGGCGTGCAGCCTAGAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGCGCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGt > 2:695340/1‑150 (MQ=255) tcctTGGCAGGCGTGCAGCCTAGAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATa > 2:700162/1‑79 (MQ=255) tcctTGGCAGGCGTGCAGCCTAGAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATa < 1:700162/79‑1 (MQ=255) ttGGCAGGCGTGCAGCCTAGAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGCGCCTGGCCCCCTCAACGTCTAGCGATGTGGCAGCGTCCTGGATCTCg > 2:585573/1‑150 (MQ=255) ggCAGGCGTGCAGCCTAGAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGCGCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGTCCTGGATCTCGcc < 2:778776/150‑1 (MQ=255) ttcactatcacacaactcaaGATCGACGCCGGTACGCACTTGTTGACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGCGCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGTCCTGGATCTCGCCg < 1:196388‑M1/130‑1 (MQ=255) cacacaactcaaGATCGACGCCGGTACGCACTTGTTGACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGCGCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGTCCTGGATCTCGCCGTACTGGCg > 2:196388‑M1/13‑150 (MQ=255) ccTAGAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGgcgcgc < 2:64049/78‑1 (MQ=255) ccTAGAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGgcgcgc > 1:64049/1‑78 (MQ=255) ccTAGAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGCGCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGTCCTGGATCTCGCCGTACTGGCGGGGc > 1:742196/1‑150 (MQ=255) cTAGAAGGATCGACGCCGGTCAACAACTGCTTACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGCGCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGTCCTGGATCTCGCCGTACTGGCGGGGCg > 1:20805/1‑150 (MQ=255) aaGGATCGACGCCGGTCAACACGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGCGCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGTCCTGGATCTCGCCGTACTGGCGGGGCGTTTc < 2:409515/150‑1 (MQ=255) | CGCCGCCAACCGGGGCCGCCGCGTACGCAGCCACCATGCCGCAAGCAGCAGCAAGAACAGCACGCCCGGCGGCATCAGCCATTGTTTGATGAAGAATCGGATCGGCATCGGCCACACCTCCTTGGCAGGCGTGCAGCCTAGAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGCGCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGTCCTGGATCTCGCCGTACTGGCGGGGCGTTTC > NC_002947/5455533‑5455823 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |