New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5455677 =	24 (0.810)	4 (0.150)	4/220	NT	15.9%	intergenic (‑37/+98)	PP_4792/PP_4793	hypothetical protein/hypothetical protein
	?	NC_002947	5455715 =	21 (0.800)					intergenic (‑75/+60)	PP_4792/PP_4793	hypothetical protein/hypothetical protein

CGCAAGCAGCAGCAAGAACAGCACGCCCGGCGGCATCAGCCATTGTTTGATGAAGAATCGGATCGGCATCGGCCACACCTCCTTGGCAGGCGTGCAGCCTAGAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGC‑GCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGTCCTGGATCTCGCCGTACTGGCGGGGCGTTTCTTGTCCTTGAGCCAGATGATCTTGGCCGATGTCGG  >  NC_002947/5455572‑5455858                                                                                                                                                |                                                                                                                                                 cGCAAGCAGCAGCAAGAACAGCACGCCCGGCGGCATCAGCCATTGTTTGATGAAGAATCGGATCGGCATCGGCCACACCTCCTTGGCAGGCGTGCAGCCTAGAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGtt                                                                                                                                            >  1:409515/1‑150 (MQ=255)      cgccagtacggcgagatccaggacgctgccacatcgctagccgttcaggacgccaggcgcaggctatcgcgcgccggttcttcactatcacacaactcaagatcgacgccggtcaacaagtgcgtaccggcgtcgatcTTGAGTtgtgtg                                                                                                                                       >  2:196388‑M2/139‑150 (MQ=255)              cggcgagatccaggacgctgccacatcgctagccgttcaggacgccaggcgcaggctatcgcgcgccggttcttcactatcacacaactcaagatcgacgccggtcaacaagtgcgtaccggcgtcgatcTTGAGTTGTGTGATAGTgaa                                                                                                                               <  1:196388‑M2/20‑1 (MQ=255)              aaGAACAGCACGCCCGGCGGCATCAGCCATTGTTTGATGAAGAATCGGATCGGCATCGGCCACACCTCCTTGGCAGGCGTGCAGCCTAGAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTgaa                                                                                                                               <  2:660565/150‑1 (MQ=255)                            cggcggCATCAGCCATTGTTTGATGAAGAATCGGATCGGCATCGGCCACACATCCTTGGAGTGCGTGCAGCCTAAAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGa                                                                                                                 >  1:696098/1‑150 (MQ=255)                                        ccATTGTTTGATGAAGAATCGGATCGGCATCGGCCACACCTCCTTGGGAGGCGTGCAGCCTCGAAGGATGTGCGCCGGTCAACACGGGCGTACCGGCGTCGAGCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCGGC‑GCCt                                                                                                    >  1:578096/1‑150 (MQ=255)                                          aTTGTTTGATGAAGAATCGGATCGGCATCGGCCACACCTCCTTGGCAGGCGTGCAGCCTAGAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGC‑GCCTgg                                                                                                  <  1:561573/150‑1 (MQ=255)                                                  atgaAGAATCTGATCGGCATCGGCCACACCTCCTTGGCGGGCGTGCAGCCTAGAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCg                                                                                                                         >  2:459780/1‑120 (MQ=255)                                                  atgaAGAATCTGATCGGCATCGGCCACACCTCCTTGGCAGGCGTGCAGCCTAGAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCg                                                                                                                         <  1:459780/120‑1 (MQ=255)                                                   tgaAGAATCGGATCGGCATCGGCCACACCTCCTTGGCAGGCGTGCAGCCTAGAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTg                                                                                                                                 <  2:628037/111‑1 (MQ=255)                                                   tgaAGAATCGGATCGGCATCGGCCACACCTCCTTGGCAGGCGTGCAGCCTAGAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTg                                                                                                                                 >  1:628037/1‑111 (MQ=255)                                                    gaagaaTCGGATCGGCATCGGCCACACCTCCTTGGCAGGCGTGCAGCCTAGAAGTATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGC‑GCCTGGCGTCCTGAAc                                                                                        >  2:298796/1‑150 (MQ=255)                                                                        gcCACACCTCCTTGGCAGGCGTGCAGCCTAGAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGC‑GCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGt                                                                    >  2:695340/1‑150 (MQ=255)                                                                                tcctTGGCAGGCGTGCAGCCTAGAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATa                                                                                                                                    >  2:700162/1‑79 (MQ=255)                                                                                tcctTGGCAGGCGTGCAGCCTAGAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATa                                                                                                                                    <  1:700162/79‑1 (MQ=255)                                                                                   ttGGCAGGCGTGCAGCCTAGAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGC‑GCCTGGCCCCCTCAACGTCTAGCGATGTGGCAGCGTCCTGGATCTCg                                                         >  2:585573/1‑150 (MQ=255)                                                                                     ggCAGGCGTGCAGCCTAGAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGC‑GCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGTCCTGGATCTCGcc                                                       <  2:778776/150‑1 (MQ=255)                                                                                      ttcactatcacacaactcaaGATCGACGCCGGTACGCACTTGTTGACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGC‑GCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGTCCTGGATCTCGCCg                                                      <  1:196388‑M1/130‑1 (MQ=255)                                                                                              cacacaactcaaGATCGACGCCGGTACGCACTTGTTGACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGC‑GCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGTCCTGGATCTCGCCGTACTGGCg                                              >  2:196388‑M1/13‑150 (MQ=255)                                                                                                  ccTAGAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGgcgcgc                                                                                                                   >  1:64049/1‑78 (MQ=255)                                                                                                  ccTAGAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGgcgcgc                                                                                                                   <  2:64049/78‑1 (MQ=255)                                                                                                  ccTAGAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGC‑GCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGTCCTGGATCTCGCCGTACTGGCGGGGc                                          >  1:742196/1‑150 (MQ=255)                                                                                                   cTAGAAGGATCGACGCCGGTCAACAACTGCTTACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGC‑GCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGTCCTGGATCTCGCCGTACTGGCGGGGCg                                         >  1:20805/1‑150 (MQ=255)                                                                                                       aaGGATCGACGCCGGTCAACACGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGC‑GCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGTCCTGGATCTCGCCGTACTGGCGGGGCGTTTc                                     <  2:409515/150‑1 (MQ=255)                                                                                                            TCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGC‑GCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGTCCTGGATCTCGCCGTACTGGCGGGGCGTTTCTTGTc                                >  2:742196‑M1/1‑150 (MQ=255)                                                                                                              gacgccggtacgcacttgttgaccggcgtcgatcTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGC‑GCCTGGCGTCCTGAACGGCTAGCGAtgt                                                                            <  1:748121‑M2/70‑1 (MQ=255)                                                                                                              gacgccggtacgcacttgttgaccggcgtcgatcTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGC‑GCCTGGCGTCCTGAACGGCTAGCGAtgt                                                                            >  2:748121‑M2/35‑104 (MQ=255)                                                                                                                   CGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGC‑GCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGTCCTGGATCTCGCCGTACTGGCGGGGCGTTTCTTGTCCTTGAGc                         >  2:377725‑M1/1‑150 (MQ=255)                                                                                                                         acaaGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGC‑GCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGTCCTGGATCTCGCCGTACTGGCGGGGCGTTTCTTGTCCTTGAGCCAgatg                   >  1:305458/1‑150 (MQ=255)                                                                                                                                  tACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGC‑GCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGTCCt                                                                 >  2:255410/1‑95 (MQ=255)                                                                                                                                  tACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGC‑GCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGTCCt                                                                 <  1:255410/95‑1 (MQ=255)                                                                                                                                         gtcgatcTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGC‑GCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGTCCTGGATCTCGCCGTACTGGCGGGGCGTTTCTTGTCCTTGAGCCAGATGATCTTGGCCGATGTCg   <  1:298796‑M2/143‑1 (MQ=255)                                                                                                                                          tcgatcTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGGTCGAATGCAGCCTTG‑GGGCTGAACGGCTAGCGATGTGGCAGCGTCCTGGATCTCGCCGTACTGGCGGGGCGTTTCTTGTCCTTGAGCCAGATGATCTTGGCCGATGTCgg  <  2:20805‑M2/144‑1 (MQ=255)                                                                                                                                              tcTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGC‑GCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGTCCTGGATCTCGCCGTACTGGCGGGGCGt                                        >  1:184625‑M2/3‑108 (MQ=255)                                                                                                                                              tcTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGC‑GCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGTCCTGGATCTCGCCGTACTGGCGGGGCGt                                        <  2:184625‑M2/106‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                 CGCAAGCAGCAGCAAGAACAGCACGCCCGGCGGCATCAGCCATTGTTTGATGAAGAATCGGATCGGCATCGGCCACACCTCCTTGGCAGGCGTGCAGCCTAGAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGC‑GCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGTCCTGGATCTCGCCGTACTGGCGGGGCGTTTCTTGTCCTTGAGCCAGATGATCTTGGCCGATGTCGG  >  NC_002947/5455572‑5455858

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.