New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5560460	34 (1.150)	5 (0.180)	5/234	NT	12.9%	coding (88/1188 nt)	hisZ	ATP phosphoribosyltransferase regulatory subunit
	?	NC_002947	= 5560489	35 (1.250)					coding (59/1188 nt)	hisZ	ATP phosphoribosyltransferase regulatory subunit

AAGGTGCGCTGATCCAGGTCCTGGCCGGCGCCGGTAAGCAGCGACTCCAGGTACTCGATATGCGGGGTGACGACCAGTTCGTAGCCCCAACTCTGGAACAGGTCCAACACCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5560348‑5560460 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacctgAGGCTGCGCGCATCGAGATCGCGCGCCGCCAGGTGTTG  <  NC_002947/5560489‑5560452                                                                                                                                                         AAGGTGCGCTGATCCAGGTCCTGGCCGGCGCCGGTAAGCAGCGACTCCAGGTACTCGATATGCGGGGTGACGACCAGTTCGTAGCCCCAACTCTGGAACAGGTCCAACACCTGAGGCTGCGCGCATCGAGATCGCGCGCCGCCAGGTGTT   <  1:214405/150‑1  AGGTGCGCTGATCCAGGTCCTGGCCGGCGCCGGTAAGCAGCGACTCCAGGTACTCGATATGCGGGGTGACGACCAGTTCGTAGCCCCAACTCTGGAACAGGTCCAACACCTGAGGCTGCGCGCATCGAGATCGCGCGCCGCCAGGTGTTG  <  1:556642/150‑1                       GGCCGGCGCCGGTAAGCAGCGACTCCAGGTGCTCGATATGCGGGGTGACGACCAGTTCGTAGCCCCAACTCTGGAACAGGTCCAACACCTGAGGCTGCGCGCATCGAGATCGCGCGCCGCCAGGT      <  2:363256/125‑1                       GGCCGGCGCCGGTAAGCAGCGACTCCAGGTACTCGATATGCGGGGTGACGACCAGTTCGTAGCCCCAACTCTGGAACAGGTCCAACACCTGAGGCTGCGCGCATCGAGATCGCGCGCCGCCAGGT      >  1:363256/1‑125                                                       TCGATATGCGGGGTGACGACCAGTTCGTAGCACCAACTCTGGAACAGGTCCAACACCT‑‑GGCGGCGCGCATCGAGATCGCGCGCC             >  2:677824/1‑84                                                                                                                                                         AAGGTGCGCTGATCCAGGTCCTGGCCGGCGCCGGTAAGCAGCGACTCCAGGTACTCGATATGCGGGGTGACGACCAGTTCGTAGCCCCAACTCTGGAACAGGTCCAACACCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5560348‑5560460 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacctgAGGCTGCGCGCATCGAGATCGCGCGCCGCCAGGTGTTG  <  NC_002947/5560489‑5560452

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.