New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5560460	34 (1.150)	5 (0.180)	5/234	NT	12.9%	coding (88/1188 nt)	hisZ	ATP phosphoribosyltransferase regulatory subunit
	?	NC_002947	= 5560489	35 (1.250)					coding (59/1188 nt)	hisZ	ATP phosphoribosyltransferase regulatory subunit

ATCAGGCGGCCGGACTGCGGGTCCACTACCTTGAAGGTGCGCTGATCCAGGTCCTGGCCGGCGCCGGTAAGCAGCGACTCCAGGTACTCGATATGCGGGGTGACGACCAGTTCGTAGCCCCAACTCTGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCGATGCGCGCAGCCTCAGGTGGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCGGTCTACCGTTGCCATTACGCCATTTCCCCTCTGGTCCGGGCGGCTTGCCAGCAGGCAAACCGTCAGAAAAGCCG  >  NC_002947/5560315‑5560606                                                                                                                                                  |                                                                                                                                                   gtCAGGCGGCCGGACTGCGGGTCCACTACCTTGAAGGTGCGCTGATCCAGGTCCTGGCCGGCGCCGGTAAGCAGCGACTCCAGGTACTCGATATGCGGGGTGACGACCAGTTCGTAGCCCCAACTCTGGAACAGGTCCAACACCTggcgg                                                                                                                                                <  2:770834/149‑1 (MQ=255)         gcCGGACTGCGGGTCCACTACCTTGAAGGTGCGCTGATCCAGGTCCTGTCCGGCGCCGGTAAGCAGCGACTCCAGGTACTCGATATGCGGGGTGACGACCAGTTCGTAGCCCCAACTCTGGAACAGGTCCAACACCTGGCGGCGCGCGAt                                                                                                                                        >  1:16760/1‑150 (MQ=255)               cTGCGGGTCCACTACCTTGAAGGTGCGCTGATCCAGGTCCTGGCCGGCGCCGGTAAGCAGCGACTCCAGGTACTCGATATGCGGGGTGACGACCAGTTCGTAGCCCCAACTCTGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCGAt                                                                                                                                  >  1:281474/1‑150 (MQ=255)                                  aaGGTGCGCTGATCCAGGTCCTGGCCGGCGCCGGTAAGCAGCGACTCCAGGTACTCGATATGCGGGGTGACGACCAGTTCGTAGCCCCAACTCTGGAACAGGTCCAACACCTGaggctgcgcgcatcgagatcgcgcgccgccaggtgtt                                                                                                               <  1:214405‑M1/150‑38 (MQ=255)                                   aGGTGCGCTGATCCAGGTCCTGGCCGGCGCCGGTAAGCAGCGACTCCAGGTACTCGATATGCGGGGTGACGACCAGTTCGTAGCCCCAACTCTGGAACAGGTCCAACACCTGaggctgcgcgcatcgagatcgcgcgccgccaggtgttg                                                                                                              <  1:556642‑M1/150‑39 (MQ=255)                                    ggTGCGCTGATCCAGGTCCTGGCCGGCGCCGGTAAGCAGCGACTCCAGGTACTCGATATGCGGGGTGACGACCAGTTCGTAGCCCCAACTCTGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCGATGCGCGCAGCCTCAGGTGGCAg                                                                                                             <  2:16760/150‑1 (MQ=255)                                       gcgcTGATCCAGGTCCTGGCCGGCGCCGGTAAGCAGCGACTCCAGGTACTCGATATGCGGGGTGACGACCAGTTCGTAGCCCCAACTCTGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCGATGCGCGCAGCCTCAGGTGGCAGTAc                                                                                                          <  2:655018/150‑1 (MQ=255)                                                cAGGTCCTGGCCGGCGCCGGTAAGCAGCGACTCCAGGTACTCGATATGCGGGGTGACGACCAGTTCGTAGCCCCAACTCTGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCGATGCGCGCAGCCTCAGGTGGCAGTACTTCCTCGAt                                                                                                 <  1:296940/150‑1 (MQ=255)                                                        ggCCGGCGCCGGTAAGCAGCGACTCCAGGTGCTCGATATGCGGGGTGACGACCAGTTCGTAGCCCCAACTCTGGAACAGGTCCAACACCTGaggctgcgcgcatcgagatcgcgcgccgccaggt                                                                                                                  <  2:363256‑M1/125‑35 (MQ=255)                                                        ggCCGGCGCCGGTAAGCAGCGACTCCAGGTACTCGATATGCGGGGTGACGACCAGTTCGTAGCCCCAACTCTGGAACAGGTCCAACACCTGaggctgcgcgcatcgagatcgcgcgccgccaggt                                                                                                                  >  1:363256‑M1/1‑91 (MQ=255)                                                         gCCGGCGCCGGTAAGCAGCGACTCCAGGTACTCGATATGCGGGGTGACGACCAGTTCGTAGCCCCAACTCTGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCGAt                                                                                                                                  <  2:511580/108‑1 (MQ=255)                                                         gCCGGCGCCGGTAAGCAGCGACTCCAGGTACTCGATATGCGGGGTGACGACCAGTTCGTAGCCCCAACTCTGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCGAt                                                                                                                                  >  1:511580/1‑108 (MQ=255)                                                                       gcagcGACTCCAGGTACTCGATATGCGGGGTGACGACCAGTTCGTAGCCCCAACTCTGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCGATGCGCGCAGCCTCAGGTGGCAGTACTTCCTCGAt                                                                                                 <  2:540090/127‑1 (MQ=255)                                                                       gcagcGACTCCAGGTACTCGATATGCGGGGTGACGACCAGTTCGTAGCCCCAACTCTGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCGATGCGCGCAGCCTCAGGTGGCAGTACTTCCTCGAt                                                                                                 >  1:540090/1‑127 (MQ=255)                                                                        cagcGACTCCAGGTACTCGATATGCGGGGTGACGACCAGTTCGTAGCCCCAACTCTGGAACAGGTCCAACACCTGGCGGCTCGCGATCTCGATGCGCGCAGCCTCAGGTGGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCGGTc                                                                         <  1:717875/150‑1 (MQ=255)                                                                         agcGACTCCAGGTACTCGATATGCGGGGTGACGACCAGTTCGTAGCCCCAACTCTGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCGATGCGCGCAGCCTCAGGTGGCAGTACTTCCTCGAt                                                                                                 <  2:64793/125‑1 (MQ=255)                                                                         agcGACTCCAGGTACTCGATATGCGGGGTGACGACCAGTTCGTAGCCCCAACTCTGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCGATGCGCGCAGCCTCAGGTGGCAGTACTTCCTCGAt                                                                                                 >  1:64793/1‑125 (MQ=255)                                                                              cTCCAGGTACTCGATATGCGGGGTGACGACCAGTTCGTAGCCCCAACTCTGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCGATGCGCGCAGCCTCAGGTGGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCGGTCTACCGt                                                                   >  2:675465/1‑150 (MQ=255)                                                                                 cAGGTACTCGATATGCGGGGTGACGACCAGTTCGTAGCCCCAACTCTGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCGATGCGCGCAGCCTCAGGTGGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCGGTCTACCGTTGc                                                                <  1:675465/150‑1 (MQ=255)                                                                                        tCGATATGCGGGGTGACGACCAGTTCGTAGCACCAACTCTGGAACAGGTCCAACACCTgcggcgcgcatcgagatcgcgcgcc                                                                                                                            >  2:677824‑M1/1‑59 (MQ=255)                                                                                                         gacCAGTTCGTAGCCCCAACTCTGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCGATGCGCGCAGCCTCAGGTGGCTGGACCCCCTCGTTGCCATCTGGCAGCAGCCAACGCACTACCGATGCAATTACACCATGTTCCCCCTGGTc                                        >  1:13696/1‑150 (MQ=255)                                                                                                         gacCAGTTCGTAGCCCCAACTCTGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCGATGCGCGCAGCCTCAGGTGGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCgg                                                                           <  1:192681/115‑1 (MQ=255)                                                                                                         gacCAGTTCGTAGCCCCAACTCTGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCGATGCGCGCAGCCTCAGGTGGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCgg                                                                           >  2:192681/1‑115 (MQ=255)                                                                                                         gacCAGTTCGTAGCCCCAACTCTGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCGATGCGCGCAGCCTCAGGTGGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCGGTCTACCGTTGCCATTACGCCATTTCCCCTCTGGTc                                        >  1:717032/1‑150 (MQ=255)                                                                                                               ttCGTAGCCCCAACTCTGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCGATGCGCGCAGCCTCAGGTGGCAGTACTTCCTc                                                                                                    <  1:631091/84‑1 (MQ=255)                                                                                                               ttCGTAGCCCCAACTCTGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCGATGCGCGCAGCCTCAGGTGGCAGTACTTCCTc                                                                                                    >  2:631091/1‑84 (MQ=255)                                                                                                                      ccccAACTCTGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCGATGCGCGCAGCCTCAGGTGGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCg                                                                            <  1:654207/101‑1 (MQ=255)                                                                                                                      ccccAACTCTGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCGATGCGCGCAGCCTCAGGTGGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCg                                                                            >  2:654207/1‑101 (MQ=255)                                                                                                                        ccAACTCTGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCGATGCGCGCAGCCTCAGGTGGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCGGTCTACCGTTGCCATTAc                                                          <  1:777278/117‑1 (MQ=255)                                                                                                                        ccAACTCTGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCGATGCGCGCAGCCTCAGGTGGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCGGTCTACCGTTGCCATTAc                                                          >  2:777278/1‑117 (MQ=255)                                                                                                                        ccAACTCTGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCGATGCGCGCAGCCTCAGGTGGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCGGTCTACCGTTGCCATTACGCCATTTCCCCTCTGGTCCGGGCGGCTTGCca                          >  1:513664/1‑149 (MQ=255)                                                                                                                        ccAACTCTGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCGATGCGCGCAGCCTCAGGTGGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCGGTCTACCGTTGCCATTACGCCATTTCCCCTCTGGTCCGGGCGGCTTGCca                          <  2:513664/149‑1 (MQ=255)                                                                                                                           aCTCTGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCGATGCGCGCAGCCTCAGGTGGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCGGTCTACCGTTGCCATTACGCCATTTCCCCTCTGGTCCGGGCGGCTTGCcagcag                      <  2:281474/150‑1 (MQ=255)                                                                                                                               tGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCGATGCGCGCAGCCTCAGGTGGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCGGTCTACCGTTGCCATTACGCCATTTCCCCTCTGGTCCGGGCGGCTTGCCAGCAGGCaa                  <  2:708643/150‑1 (MQ=255)                                                                                                                                 gAACAGGTCCAACACCTGGCGGCGCGCGATCTCGATGCGCGCAGCCTCAGGTGGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCGGTCTACCGTTGCCATTACGCCATTTCCCCTCTGGTCCGGGCGGCTTGCCAGCAGGCAAAc                >  1:114097/1‑150 (MQ=255)                                                                                                                                     aGGTCCAACACCTGGCGGCGCGCGATCTCGATGCGCGCAGCCTCAGGTGGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCgg                                                                           >  1:261923/1‑87 (MQ=255)                                                                                                                                     aGGTCCAACACCTGGCGGCGCGCGATCTCGATGCGCGCAGCCTCAGGTGGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCgg                                                                           <  2:261923/87‑1 (MQ=255)                                                                                                                                        tCCAACACCTGGCGGCGCGCGATCTCGATGCGCGCAGCCTCAGTTGGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCGGTc                                                                         >  2:551446/1‑86 (MQ=255)                                                                                                                                        tCCAACACCTGGCGGCGCGCGATCTCGATGCGCGCAGCCTCAGGTGGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCGGTc                                                                         <  1:551446/86‑1 (MQ=255)                                                                                                                                          cAACACCTGGCGGCGCGCGATCTCGATGCGCGCAGCCTcaggtgttggacctgttccagagttggggctacgaactggtcgtcaccccgcatatcgagtacctggagtcgctgcttaccggcgccggccaggacctggatcagcgcacct       <  1:556642‑M2/150‑113 (MQ=255)                                                                                                                                           aaCACCTGGCGGCGCGCGATCTCGATGCGCGCAGCCTcaggtgttggacctgttccagagttggggctacgaactggtcgtcaccccgcatatcgagtacctggagtcgctgcttaccggcgccggccaggacctggatcagcgcacctt      <  1:214405‑M2/150‑114 (MQ=255)                                                                                                                                            acacCTGGCGGCGCGCGATCTCGATGCGCGCAGCCTCAGGTGGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCGGTCTACCGTTGCCATTACGCCATTTCCCCTCTGGTCCGGGCGGCTTGCCAGCAGGCAAACCGTCAGAAAAg     >  2:168770/1‑150 (MQ=255)                                                                                                                                              acCTGGCGGCGCGCGATCTCGATGCGCGCAGCCTcaggtgttggacctgttccagagttggggctacgaactggtcgtcaccccgcatatcgagtacctggagtcgctgcttaccggcgccggcc                            >  1:363256‑M2/1‑34 (MQ=255)                                                                                                                                              acCTGGCGGCGCGCGATCTCGATGCGCGCAGCCTcaggtgttggacctgttccagagttggggctacgaactggtcgtcaccccgcatatcgagcacctggagtcgctgcttaccggcgccggcc                            <  2:363256‑M2/125‑92 (MQ=255)                                                                                                                                               ccTGGCGGCGCGCGATCTCGATGCGCGCAGCCTCAGGTGGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCGGTCTACCGTTGCCATTACGCCATTTCCCCTCTGGTCCGGGCGGCTTGCCAGCAGGCAAACCGTCAGAAAAGCCg  <  1:523193/150‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                   ATCAGGCGGCCGGACTGCGGGTCCACTACCTTGAAGGTGCGCTGATCCAGGTCCTGGCCGGCGCCGGTAAGCAGCGACTCCAGGTACTCGATATGCGGGGTGACGACCAGTTCGTAGCCCCAACTCTGGAACAGGTCCAACACCTGGCGGCGCGCGATCTCGATGCGCGCAGCCTCAGGTGGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCGGTCTACCGTTGCCATTACGCCATTTCCCCTCTGGTCCGGGCGGCTTGCCAGCAGGCAAACCGTCAGAAAAGCCG  >  NC_002947/5560315‑5560606

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.