New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5632465	23 (0.780)	3 (0.110)	3/236	NT	12.5%	coding (1944/3954 nt)	putA	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase
	?	NC_002947	= 5632479	20 (0.710)					coding (1958/3954 nt)	putA	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase

GCCATGCTGGCCACCGCTCACAACGACTGGAAGGCTGCCCCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5632421‑5632465 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctgGCGGCGCAG‑GCCAGCAGCGGGGCAGCCTTCCAGTCGTTGTGAGCGGTGGCCAGCATGGCGCAGGACAGCGACGCCAGGCGGTGTTCATTGGCCATGTCGATGCCGGCCGAGTTGGCCCGTTCGGTGCCATACAGGTCGCGCGGCAGG  <  NC_002947/5632479‑5632333                                                                                                                                                                                                   GCCATGCTGGCCACCGCTCACAACGACTGGAAGGCTGCCCCGCTGGCGGCGCAG‑GCCAGCAGCGG                                                                                                                                 >  1:369953/1‑65 GCCATGCTGGCCACCGCTCACAACGACTGGAAGGCTGCCCCGCTGGCGGCGCAG‑GCCAGCAGCGG                                                                                                                                 <  2:369953/65‑1            CACCGCTCACAACGACTGGAAGGCTGCCCCGCTGCTGGC‑CTGCGCCGCCAGCGGGGCAGCCTTCCAGTCGTTGTGAGCGGTGGCCAGCATGGCGCAGGACAGCGACGCCAGGCGGTGTTCATTGGCCATGTCGATGCCGGCCGAGTTGGC                                 >  2:494611/1‑150                                           CTGGCGGCGCAG‑GCCAGCAGCGGGGCAGCCTTCCAGTCGTTGTGAGCGGTGGCCAGCATGGCGCAGGACAGCGACGCCAGGCGGTGTTCATTGGCCATGTCGATGCCGGCCGAGTTGGCCCGTTCGGTGCCATACAGGTCGCGCGGCAGG  <  2:445072/150‑1                                           CTGGCGGCGCAG‑GCCAGCAGCGGGGCAGCCTTCCAGTCGTTGTGAGCGGTGGCCAGCATGGCGCAGGACAGCGACGCCAGGCGGTGTTCATTGGCCATGTCGATGCCGGCCGAGTTGGCCCGTTCGGTGCCATACAGGTCGCGCGGCAGG  <  2:449788/150‑1                                                                                                                                                                                                   GCCATGCTGGCCACCGCTCACAACGACTGGAAGGCTGCCCCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5632421‑5632465 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctgGCGGCGCAG‑GCCAGCAGCGGGGCAGCCTTCCAGTCGTTGTGAGCGGTGGCCAGCATGGCGCAGGACAGCGACGCCAGGCGGTGTTCATTGGCCATGTCGATGCCGGCCGAGTTGGCCCGTTCGGTGCCATACAGGTCGCGCGGCAGG  <  NC_002947/5632479‑5632333

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.