New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5632465	23 (0.780)	3 (0.110)	3/236	NT	12.5%	coding (1944/3954 nt)	putA	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase
	?	NC_002947	= 5632479	20 (0.710)					coding (1958/3954 nt)	putA	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase

ACCCACGCATTCCCCTGCCGCGCGACCTGTATGGCACCGAACGGGCCAACTCGGCCGGCATCGACATGGCCAATGAACACCGCCTGGCGTCGCTGTCCTGCGCCATGCTGGCCACCGCTCACAACGACTGGAAGGCTGCCCCGCTGCTGGC‑CTGCGCCGCCAGCGAGAGCGCTGCCGCACCGGTGCTGAACCCGGCTGACCACCGCGACGTCGTCGGCCATGTGCAGGAGGCCACCGTTGCCGACGTTGACAACGCCATCCAGTGCGCACTGAACGCCGCGCCGATCTGGCA  >  NC_002947/5632320‑5632611                                                                                                                                                  |                                                                                                                                                    aCCCACGCATTCCCCTGCCGCGCGACCTGTATGGCACCGAACGGGCCAACTCGGCCGGCATCGACATGGCCAATGAACACCGCCTGGCGTCGCTGTCCTGCGCCATGCTGGCCACCGCTCACAACGACTGGAAGGCTGCCCCGCTGCTgg                                                                                                                                                 >  1:781589/1‑150 (MQ=255)         aTTCCCCTGCCGCGCGACCTGTATGGCACCGAACGGGCCAACTCGGCCGGCATCGACATGGCCAATGAACACCGCCTGGCGTCGCTGTCCTGCGCCATGCTGGCCACCGCGCACAACGACTGGAAGGCTGCGCCGCTGCTGGC‑CTGcgcc                                                                                                                                        >  2:140706/1‑150 (MQ=255)          ttCCCCTGCCGCGCGACCTGTATGGCACCGAACGGGCCAACTCGGCCGGCATCGACATGGCCAATGAACACCGCCTGGCGTCGCTGTCCTGCGCCATGCTGGCCACCGCTCACAACGACTGGAAGGCTGCCCCGCTGCTGGC‑CTGcgccg                                                                                                                                       >  1:396448/1‑150 (MQ=255)              ccTGCCGCGCGACCTGTATGGCACCGAACGGGCCAACTCGGCCGGCATCGACATGGCCAATGAACACCGCCTGGCGTCGCTGTCCTGCGCCATGCTGGCCACCGCTCACAACGACTGGAAGGCTGCCCCGCTGCTGGC‑CTGCGCCGCcag                                                                                                                                   <  2:449788‑M2/150‑4 (MQ=255)              ccTGCCGCGCGACCTGTATGGCACCGAACGGGCCAACTCGGCCGGCATCGACATGGCCAATGAACACCGCCTGGCGTCGCTGTCCTGCGCCATGCTGGCCACCGCTCACAACGACTGGAAGGCTGCCCCGCTGCTGGC‑CTGCGCCGCcag                                                                                                                                   <  2:445072‑M2/150‑4 (MQ=255)                 gCCGCGCGACATGTATGGCCACGAACGGGCCAACTCGGCCGGCATCGACATGGCCAATGAACACCGCCTGGCGTCGCTGTCCTGCGCCATGCTGGCCACCGCTCACAACGACTGGAAGGCTGCCCCGCTGCTGGC‑CTGCGCCGCCAGCga                                                                                                                                <  2:781589/150‑1 (MQ=255)                                    aCCGAACGGGCCAACTCGGCCGGCATCGACATGGCCAATGAACACCGCCTGGCGTCGCTGTCCTGCGCCATGCTGGCCACCGCTCACAACGACTGGAAGGCTGCCCCGCTGCTGGC‑CTGCGCCGCCAGCGAGAGCGCTGCCGCACCGGTg                                                                                                             <  1:449788/150‑1 (MQ=255)                                            ggCCAACTCGGCCGGCATCGACATGGCCAATGAACACCGCCTGGCGTCGCTGTCCTGCGCCATGCTGGCCACCGCTCACAACGACTGGAAGGCTGCCCCGCTGCTGGC‑CTGCGCCGCCAGCGAGAGCGCTGCCGCACCGGTGCTGAAccc                                                                                                     <  1:445072/150‑1 (MQ=255)                                             gCCAACTCGGCCGGCATCGACATGGCCAATGAACACCGCCTGGCGTCGCTGTCCTGCGCCATGCTGGCCACCGCTCACAACGACTGGAAGGCTGCCCCGCTGGCGGCGCAG‑GCCAGcagcggggcagccttccagtcgttgtgagcggtg                                                                                                    >  2:494611‑M2/1‑116 (MQ=255)                                             gCCAACTCGGCCGGCATCGACATGGCCAATGAACACCGCCTGGCGTCGCTGTCCTGCGCCATGCTGGCCACCGCTCACAACGACTGGAAGGCTGCCCCGCTGCTGGC‑CTGCGCCGCCAGCGAGAGCGCTGCCGCACCGGTGCTGAACCCg                                                                                                    >  2:378689/1‑150 (MQ=255)                                              ccAACTCGGCCGGCATCGACATGGCCAATGAACACCGCCTGGCGTCGCTGTCCTGCGCCATGCTGGCCACCGCTCACAACGACTGGAAGGCTGCCCCGCTGCTGGC‑CTGCGCCGCCAGCGAGAGCGCTGCCGCACCGGTg                                                                                                             >  2:577978/1‑140 (MQ=255)                                              ccAACTCGGCCGGCATCGACATGGCCAATGAACACCGCCTGGCGTCGCTGTCCTGCGCCATGCTGGCCACCGCTCACAACGACTGGAAGGCTGCCCCGCTGCTGGC‑CTGCGCCGCCAGCGAGAGCGCTGCCGCACCGGTg                                                                                                             <  1:577978/140‑1 (MQ=255)                                                           cATCGACATGGCCAATGAACACCGCCTGGCGTCGCTGTCCTGCGCCATGCTGGCCACCGCTCACAACGACTGGAAGGCTGCCCCGCTGCTGGC‑CGGCGCCGCCAGCGAGAGCGCTGTCGCACCGGTGCTGAACCCGGCTGACCACCGCGa                                                                                      <  1:140706/150‑1 (MQ=255)                                                                  aTGGCCAATGAACACCGCCTGGCGTCGCTGTCCTGCGCCATGCTGGCCACCGCTCACAACGACTGGAAGGCTGCCCCGCTGCTGGC‑CTGCGCCGCCAGCGAGAGCGCTGCCGCACCGGTGCTGAACCCGGCTGACCACCGCGACgtcgtc                                                                               <  1:279416/150‑1 (MQ=255)                                                                     gCCAATGAACACCGCCTGGCGTCGCTGTCCTGCGCCATGCTGGCCACCGCTCACAACGACTGGAAGGCTGCCCCGCTGCTGGC‑CTGCGCCGCCAGCGAGAGCGCTGCCGCACCGGTGCTGAACCCGGCTGACCACCGCGACGTCGTCGGc                                                                            >  2:413029/1‑150 (MQ=255)                                                                                ccGCCTGGCGTCGCTGTCCTGCGCCATGCTGGCCACCGCTCACAACGACTGGAAGGCTGCCCCGCTGCTGGC‑CTGCGCCGCCAGCGAGAGCGCTGCCGCACCGGTGCTGAACCCGGCTGACCACCGCGACGTCGTCGGCCATGTGCagga                                                                 <  2:396448/150‑1 (MQ=255)                                                                                         gTCGCTGTCCTGCGCCATGCTGGCCACCGCTCACAACGACTGGAAGGCTGCCCCGCTGCTGGC‑CTGCGCCGCCAGCGAGAGCGCTGCCGCACCGGTGCTGAACCCGGCTGACCACCGCGACGTCGTCGGCCATGTGCAGGAGGCCACCGt                                                        >  1:432697/1‑150 (MQ=255)                                                                                          tCGCTGTCCTGCGCCATGCTGGCCACCGCTCACAACGACTGGAAGGCTGCCCCGCTGCTGGC‑CTGCGCCGCCAGCGAGAGCGCTGCCGCACCGGTGCTGAACCCGGCTGACCACCGCGACGTCGTCGGCCATGTGCAGGAGGCCACCGtt                                                       >  1:103366/1‑150 (MQ=255)                                                                                                      gcCATGCTGGCCACCGCTCACAACGACTGGAAGGCTGCCCCGCTGgcggcgcaggccagcagcgg                                                                                                                                 <  2:369953‑M1/65‑21 (MQ=255)                                                                                                      gcCATGCTGGCCACCGCTCACAACGACTGGAAGGCTGCCCCGCTGgcggcgcaggccagcagcgg                                                                                                                                 >  1:369953‑M1/1‑45 (MQ=255)                                                                                                         aTGCTGGCCACCGCTCACAACGACTGGAAGGCTGCCGTGTGGCTGGC‑CTGCGCCGCCAGCGAGAGCGCTGCCGCACCGGTGCTGAACCCGGCTGACCACCGCGACGTCGTCGGCCATGTGCAGGAGGCCACCGTTGCCGACGTTGACAAc                                        <  1:640414/150‑1 (MQ=255)                                                                                                           gCTGGCCACCGCTCACAACGACTGGAAGGCTGCCCCGCTGCTGGC‑CTGCGCCGCCAGCGAGAGCGCTGCCGCACCGGTGCTGAACCCGGCTGACCACCGCGACGTCGTCGGCCATGTGCAGGAGGCCACCGTTGCCGACGTTGACAACGc                                      >  1:466171/1‑150 (MQ=255)                                                                                                             tGGCCACCGCTCACAACGACTGGAAGGCTGCCCCGCTGCTGGC‑CTGCGCCGCCAGCGAGAGCGCTGCCGCACCGGTGCTGAACCCGGCTGACCACCGCGACGTCGTCGGCCATGTGCAGGAGGCCACCGTTGcc                                                    <  1:763809/134‑1 (MQ=255)                                                                                                             tGGCCACCGCTCACAACGACTGGAAGGCTGCCCCGCTGCTGGC‑CTGCGCCGCCAGCGAGAGCGCTGCCGCACCGGTGCTGAACCCGGCTGACCACCGCGACGTCGTCGGCCATGTGCAGGAGGCCACCGTTGcc                                                    >  2:763809/1‑134 (MQ=255)                                                                                                                 cACCGCTCACAACGACTGGAAGGCTGCCCCGCTGctggcctgcgccgccagcggggcagccttccagtcgttgtgagcggtggccagcatggcgcaggacagcgacgccaggcggtgttcattggccatgtcgatgccggccgagttggc                                 >  2:494611‑M1/1‑34 (MQ=255)                                                                                                                 cACCGCTCACAACGACTGGAAGGCTGCCCCGCTGCTGGC‑CTGCGCCGCCAGCGAGAGCGCTGCCGCACCGGTGCTGAACCCGGCTGACCACCGCGACGTCGTCGGCCATGTGCAGGAGGCCACCGTTGCCGACGTTGACAACGCCATCCa                                >  2:596449/1‑150 (MQ=255)                                                                                                                     gCTCACAACGACTGGAAGGCTGCCCCGCTGCTGGC‑CTGCGCCGCCAGCGAGAGCGCTGCCGCACCGGTGCTGAACCCGGCTGACCACCGCGACGTCGTCGGCCATGTGCAGGAGGCCACCGTTGCCGACGTTGACAACGCCATCCAGTgc                            >  1:324630/1‑150 (MQ=255)                                                                                                                      cTCACAACGACTGGAAGGCTGCCCCGCTGCTGGC‑CTGCGCCGCCAGCGAGAGCGCTGCCGCACCGGTGCTGAACCCGGCTGACCACCGCGACGTCGTCGGCCATGTGCAGGAGGCCACCGTTGCCGACGTTGACAACGCCATCCAGTgcg                           >  2:524100/1‑150 (MQ=255)                                                                                                                         acaACGACTGGAAGGCTGCCCCGCTGCTGGC‑CTGCGCCGCCAGCGAGAGCGCTGCCGCACCGGTGCTGAACCCGGCTGACCACCGCGACGTCGTCGGCCATGTGCAGGAGGCCACCGTTGCCGACGTTGACAACGCCATCCAGTGCGCAc                        >  1:598585/1‑150 (MQ=255)                                                                                                                                             ccGCTGCTGGC‑CTGCGCCGCcagcggggcagccttccagtcgttgtgagcggtggccagcatggc                                                                                         >  1:369953‑M2/1‑20 (MQ=255)                                                                                                                                             ccGCTGCTGGC‑CTGCGCCGCcagcggggcagccttccagtcgttgtgagcggtggccagcatggc                                                                                         <  2:369953‑M2/65‑46 (MQ=255)                                                                                                                                             ccGCTGCTGGC‑CTGCGCCGCCAGCGAGAGCGCTGCCGCACCGGTGCTGAACCCGGCTGACCACCGCGACGTCGTCGGCCATGTGCACAAGGCCACCTTTGCCGACGTTGACAACGCCCTCCCCCGCGCACTGCAccccgcccccgtctcg    >  2:294101/1‑143 (MQ=255)                                                                                                                                                cTGgcggcgcaggccagcagcggggcagccttccagtcgttgtgagcggtggccagcatggcgcaggacagcgacgccaggcggtgttcattggccatgtcgatgccggccgagttggcccgttcggtgccatacaggtcgcgcggcagg  <  2:449788‑M1/150‑148 (MQ=255)                                                                                                                                                cTGgcggcgcaggccagcagcggggcagccttccagtcgttgtgagcggtggccagcatggcgcaggacagcgacgccaggcggtgttcattggccatgtcgatgccggccgagttggcccgttcggtgccatacaggtcgcgcggcagg  <  2:445072‑M1/150‑148 (MQ=255)                                                                                                                                                  |                                                                                                                                                    ACCCACGCATTCCCCTGCCGCGCGACCTGTATGGCACCGAACGGGCCAACTCGGCCGGCATCGACATGGCCAATGAACACCGCCTGGCGTCGCTGTCCTGCGCCATGCTGGCCACCGCTCACAACGACTGGAAGGCTGCCCCGCTGCTGGC‑CTGCGCCGCCAGCGAGAGCGCTGCCGCACCGGTGCTGAACCCGGCTGACCACCGCGACGTCGTCGGCCATGTGCAGGAGGCCACCGTTGCCGACGTTGACAACGCCATCCAGTGCGCACTGAACGCCGCGCCGATCTGGCA  >  NC_002947/5632320‑5632611

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.