New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5756149	30 (1.020)	4 (0.140)	3/238	NT	10.7%	coding (1207/1437 nt)	glnG	two‑component system DNA‑binding response regulator GlnL/GlnG
	?	NC_002947	= 5756181	38 (1.330)					coding (1239/1437 nt)	glnG	two‑component system DNA‑binding response regulator GlnL/GlnG

TGCCATGGCCGGGCAATGTGCGACAGATGGAGAACACCTGCCGCTGGATCACCGTGATGGCCTCCAGCCGCGAAGTGCTGATCGGCGACCTGCCACCAGAACTGCTGAACCTGCCACACGATGCCGCGCCGGTAACCAACTGGGAGCAGGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5755997‑5756149 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccGCGCGCCAAGGCCTGGTCGGCCCACTGGCGCAGGGC  <  NC_002947/5756181‑5756146                                                                                                                                                                                               TGCCATGGCCGGGCAATGTGCGACAGATGGAGAACACCTGCCGCTGGATCACCGTGATGGCCTCCAGCCGCGAAGTGCTGATCGGCGACCTGCCACCAGAACTGCTGAACCTGCCACACGATGCCGCGCCGGTAACCAACTGGGAGCAGG                                         >  2:377602/1‑150   CCATGGCCGGGCAATGTGCGACAGATGGAGAACACCTGCCGCTGGATCACCGTGATGGCCTCCAGCCGCGAAGTGCTGATCGGCGACCTGCCACCAGAACTGCTGAACCTGCCACACGATGCCGCGCCGGTAACCAACTGGGAGCAGGCC                                       >  2:667577/1‑150    CATGGCCGGGCAATGTGCGACAGATGGAGAACACCTGCCGCTGGATCACCGTGATGGCCTCCAGCCGCGAAGTGCTGATCGGCGACCTGCCACCAGAACTGCTGAACCTGCCACACGATGCCGCGCCGGTAACCAACTGGGAGCAGGCCC                                      >  1:576634/1‑150                                     CCTGCCGCTGGATCACCGTGATGGCCTCCAGCCGCGAAGTGCTGATCGGCGACCTGCCACCAGAACTGCTGAACCTGCCACACGATGCCGCGCCGGTAACCAACTGGGAGCAGGCCC‑TGCGCCAAGGCCTGGTCGGCCCACTGGCGCAGG    <  1:377602/150‑1                                      CTGCCGCTGAATCACCGTGATGGCCTCCAGCCGCGAAGTGCTGATCGGCGACCTGCCACCAGAACTGCTGAACCTGCCACACGATGCCGCGCCGGTAACCAACTGGGAGCAGGCCCGCGCGCCAAGGCCTGGTCGGCCCACTGGCGCAGG    <  1:793343/150‑1                                                                                                       TGCTGAACCTGCCACACGATGCCGCGCCGGTAACCAACTGGGAGCAGGCCCGCGCGCCAAGGCCTGGTCGGCCCACTGGCGCAGGGC  <  1:400315/87‑1                                                                                                       TGCTGAACCTGCCACACGATGCCGCGCCGGTAACCAACTGGGAGCAGGCCCGCGCGCCAAGGCCTGGTCGGCCCACTGGCGCAGGGC  >  2:400315/1‑87                                                                                                                                                                                               TGCCATGGCCGGGCAATGTGCGACAGATGGAGAACACCTGCCGCTGGATCACCGTGATGGCCTCCAGCCGCGAAGTGCTGATCGGCGACCTGCCACCAGAACTGCTGAACCTGCCACACGATGCCGCGCCGGTAACCAACTGGGAGCAGGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5755997‑5756149 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccGCGCGCCAAGGCCTGGTCGGCCCACTGGCGCAGGGC  <  NC_002947/5756181‑5756146

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.