| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5756149 | 30 (1.020) | 4 (0.140) | 3/238 | NT | 10.7% | coding (1207/1437 nt) | glnG | two‑component system DNA‑binding response regulator GlnL/GlnG |
| ? | NC_002947 | = 5756181 | 38 (1.330) | coding (1239/1437 nt) | glnG | two‑component system DNA‑binding response regulator GlnL/GlnG | |||||
CATGGCCGGGCAATGTGCGACAGATGGAGAACACCTGCCGCTGGATCACCGTGATGGCCTCCAGCCGCGAAGTGCTGATCGGCGACCTGCCACCAGAACTGCTGAACCTGCCACACGATGCCGCGCCGGTAACCAACTGGGAGCAGGCCCTGCGCCAGTGGGCCGACCAGGCCTTGGCGCGCGGGCAGACCAGCCTGCTGGACAGCGCAGTGCCGAGCTTTGAACGGATCATGATCGAGACGGCACTCAAGCACACCGCCGGCCGCCGTCGCGATGCTGCGCTGTTGCTGGGTTGGGG > NC_002947/5756000‑5756297 | cATGGCCGGGCAATGTGCGACAGATGGAGAACACCTGCCGCTGGATCACCGTGATGGCCTCCAGCCGCGAAGTGCTGATCGGCGACCTGCCACCAGAACTGCTGAACCTGCCACACGATGCCGCGCCGGTAACCAACTGGGAGCAGGCCC > 1:576634‑M1/1‑150 (MQ=255) aTGGCCGGGCAATGTGCGACAGATGGAGAACACCTGCCGCTGGATCACCGTGATGGCCTCCAGCCGCGAAGTGCTGATCGGCGACCTGCCACCAGAACTGCTGAACCTGCCACACGATGCCGCGCCGGTAACCAACTGGGAGCAGGCCCt > 2:617467/1‑150 (MQ=255) ggCCGGGCAATGTGCGACAGATGGAGAACACCTGCCGCTGGATCACCGTGATGGCCTCCAGCCGCGAAGTGCTGATCGGCGACCTGCCACCAGAACTGCTGAACCTGCCACACGATGCCGCGCCGGTAACCAACTGGGAGCAGGCCCTgc < 1:255954/150‑1 (MQ=255) ggCCGGGCAATGTGCGACAGATGGAGAACACCTGCCGCTGGATCACCGTGATGGCCTCCAGCCGCGAAGTGCTGATCGGCGACCTGCCACAAGAACTGCTGAACCTGCCACACGATGCCGCGCCGGTAACCAACTGGGAGCAGGCCCTgc < 2:684366/150‑1 (MQ=255) aGATGGAGAACACCTGCCGCTGGATCACCGTGATGGCCTCCAGCCGCGAAGTGCTGATCGGCGACCTGCCACCAGAACTGCTGAACCTGCCACACGATGCCGCGCCGGTAACCAACTGGGAGCAGGCCCTGCGCCAGTGGGCCGACCAgg > 2:631271/1‑150 (MQ=255) tGGAGAACACCTGCCGCTGGATCACCGTGATGGCCTCCAGCCGCGAAGTGCTGATCGGCGACCTGCCACCAGAACTGCTGAACCTGCCACACGATGCCGCGCCGGTAACCAACTGGGAGCAGGCCCTGCGCCAGTGGGCCGACCAGGCCt > 1:463294/1‑150 (MQ=255) gagaACACCTGCCGCTGGATCACCGTGATGGCCTCCAGCCGCGAAGTGCTGATCGGCGACCTGCCACCAGAACTGCTGAACCTGCCACACGATGCCGCGCCGGTAACCAACTGGGAGCAGGCCCTGCGCCAGTGGGCCGACCAGGCCTTg < 2:463294/150‑1 (MQ=255) gagaACACCTGCCGCTGGATCACCGTGATGGCCTCCAGCCGCGAAGTGCTGATCGGCGACCTGCCACCAGAACTGCTGAACCTGCCACACGATGCCGCGCCGGTAACCAACTGGGAGCAGGCCCTGCGCCAGTGGGCCGACCAGGCCTTg < 1:794966/150‑1 (MQ=255) gagaACACCTGCCGCTGGATCACCGTGATGGCCTCCAGCCGCGAAGTGCTGATCGGCGACCTGCCACCAGAACTGCTGAACCTGCCACACGATGCCGCGCCGGTAACCAACTGGGAGCAGGCCCTGCGCCAGTGGGCCGACCAGGCCTTg < 1:617467/150‑1 (MQ=255) ccTGCCGCTGGATCACCGTGATGGCCTCCAGCCGCGAAGTGCTGATCGGCGACCTGCCACCAGAACTGCTGAACCTGCCACACGATGCCGCGCCGGTAACCAACTGGGAGCAGGCCCtgcgccaaggcctggtcggcccactggcgcagg < 1:377602‑M1/150‑34 (MQ=255) cTGCCGCTGAATCACCGTGATGGCCTCCAGCCGCGAAGTGCTGATCGGCGACCTGCCACCAGAACTGCTGAACCTGCCACACGATGCCGCGCCGGTAACCAACTGGGAGCAGGCCCgcgcgccaaggcctggtcggcccactggcgcagg < 1:793343‑M1/150‑35 (MQ=255) aTCACCGTGATGGCCTCCAGCCGCGAAGTGCTGATCGGCGACCTGCCACCAGAACTGCTGAACCTGCCACACGATGCCGCGCCGGTAACCAACTGGGAGCAGGCCCTGCGCCAGTGGGCCGACCAGGCCTTGGCGCGCGGGCAGACCAGc < 1:371034/150‑1 (MQ=255) ccTCCAGCCGCGAAGTGCTGATCGGCGACCTGCCACCAGAACTGCTGAACCTGCCACACGATGCCGCGCCGGTAACCAACTGGGAGCAGGCCCTGCGCCAGTGGGCCGACCAGGCCTTGGCGCGCGGGCAGACCAGCCTGCTggctggcg < 2:198912/150‑7 (MQ=255) ccTCCAGCCGCGAAGTGCTGATCGGCGACCTGCCACCAGAACTGCTGAACCTGCCACACGATGCCGCGCCGGTAACCAACTGGGAGCAGGCCCTGCGCCAGTGGGCCGACCAGGCCTTGGCGCGCGGGCAGACCAGCCTGCTGGACAgcg < 2:649324/150‑1 (MQ=255) aGCCGCGAAGTGCTGATCGGCGACCTGCCACCAGAACTGCTGAACCTGCCACACGATGCCGCGCCGGTAACCAACTGGGAGCAGGCCCTGCGCCAGTGGGCCGACCAGGCCTTGGCGCGCGGGCAGACCAGCCTGCTGGACAGCGCAGTg < 1:667577/150‑1 (MQ=255) gcgAAGTGCTGATCGGCGACCTGCCACCAGAACTGCTGAACCTGCCACACGATGCCGCGCCGGTAACCAACTGGGAGCAGGCCCTGCGCCAGTGGGCCGACCAGGCCTTGGCGCGCGGGCAGACCAGCCTGCTGGACAGCGCAGTGCCGa < 1:527045/150‑1 (MQ=255) tGATCGGCGACCTGCCACCAGAACTGCTGAACCTGCCACACGATGCCGCGCCGGTAACCAACTGGGAGCAGGCCCTGCGCCAGTGGGCCGACCAGGCCTTg < 1:739465/101‑1 (MQ=255) tGATCGGCGACCTGCCACCAGAACTGCTGAACCTGCCACACGATGCCGCGCCGGTAACCAACTGGGAGCAGGCCCTGCGCCAGTGGGCCGACCAGGCCTTg > 2:739465/1‑101 (MQ=255) ctgctgAACCTGCCACACGATGCCGCGCCGGTAACCAACTGGGAGCAGGCCCTGCGCCAGTGGGCCGACCAGGCCTTGGCGCGCGGGCAGACCAGCCTGCTGGACAGCGCAGTGCCGAGCTTTGAACGGATCATGATCGAGACGGCACTc < 1:80567/150‑1 (MQ=255) tgctgAACCTGCCACACGATGCCGCGCCGGTAACCAACTGGGAGCAGGCCCgcgcgccaaggcctggtcggcccactggcgcagggc > 2:400315‑M1/1‑51 (MQ=255) tgctgAACCTGCCACACGATGCCGCGCCGGTAACCAACTGGGAGCAGGCCCgcgcgccaaggcctggtcggcccactggcgcagggc < 1:400315‑M1/87‑37 (MQ=255) ctgAACCTGCCACACGATGCCGCGCCGGTAACCAACTGGGAGCAGGCCCTGCGCCAGTGGGCCGACCAGGCCTTGGCGCGCGGGCAGACCAGCCTGCTGGACAGCGCAGTGCCGAGCTTTGAACGGATCATGATCGAGACGGCACTCAAg > 1:383558/1‑150 (MQ=255) gAACCTGCCACACGATGCCGCGCCGGTAACCAACTGGGAGCAGGCCCTGCGCCAGTGGGCCGACCAGGCCTTGGCGCGCGGGCAGACCAGCCTGCTGGACAGCGCAGTGCCGAGCTTTGAACGGATCATGATCGAGACGGCACTCAAGca < 1:305611/150‑1 (MQ=255) aaCCTGCCACACGATGCCGCGCCGGTAACCAACTGGGAGCAGGCCCTGCGCCAGTGGGCCGACCAGGCCTTGGCGCGCGGGCAGACCAGCCTGCTGGACAGCGCAGTGCCGAGCTTTGAAc < 2:116057/121‑1 (MQ=255) aaCCTGCCACACGATGCCGCGCCGGTAACCAACTGGGAGCAGGCCCTGCGCCAGTGGGCCGACCAGGCCTTGGCGCGCGGGCAGACCAGCCTGCTGGACAGCGCAGTGCCGAGCTTTGAAc > 1:116057/1‑121 (MQ=255) aCCTGCCACACGATGCCGCGCCGGTAACCAACTGGGAGCAGGCCCTGCGCCAGTGGGCCGACCAGGCCTTGGCGCGCGGGCAGACCAGCCTGCTGGACAGCGCAGTGCCGAGCTTTGAACGGATCATGATCGAGACGGCACTCAAGcaca > 1:571948/1‑150 (MQ=255) cacaCGATGCCGCGCCGGTAACCAACTGGGAGCAGGCCCTGCGCCAGTGGGCCGACCAGGCCTTGGCGCGCGGGCAGACCAGCCTGCTGGACAGCGCAGTGCCGAGCTTTGAACGGATCATGATCGAGACGGCACTCAAGCACAccgccg > 2:255865/1‑150 (MQ=255) acGATGCCGCGCCGGTAACCAACCGGGAGCAGGCCCTGCGCCAGTGTGCCGACCAGGCCTTGGCGCGCGGGCAGACCAGCCTGCTGGACAGCGCAGTGCCGAGCTTTGAACGGATCATGATCGAGACGGCACTCAAGCACACCgccggcc < 1:287964/150‑1 (MQ=255) aTGCCGCGCCGGTAACCAACTGGGAGCAGGCCCTGCGCCAGTGGGCCGACCAGGCCTTGGCGCGCGGGCAGACCAGCCTGCTGGACAGCGCAGTGCCGAGCTTTGAACGGATCATGATCGAGACGGCACTCAAGCACACCGCCGgccgcc > 1:457354/1‑150 (MQ=255) gcgcCGGTAACCAACTGGGAGCAGGCCCTGCGCCAGTGGGCCGACCAGGCCTTGGCGCGCGGGCAGACCAGCCTGCTGGACAGCGCAGTGCCGAGCTTTGAACGGATCATGATCGAGACGGCACTCAAGCACACCGCCGGCCGCCGTcgc > 1:150425/1‑150 (MQ=255) ccGGTAACCAACTGGGAGCAGGCCCTGCGCCAGTGGGCCGACCAGGCCTTGGCGCGCGGGCAGACCAGCCTGCTGGACAGCGCAGTGCCGAGCTTTGAACGGATCAAAATCAAGACGGCACTCAAGCACACCGCCGACCGCCGTCGCGAt > 2:240983/1‑150 (MQ=255) cAACTGGGAGCAGGCCCTGCGCCAGTGGGCCGACCAGGCCTTGGCGCGCGGGCAGACCAGCCTGCTGGACAGCGCAGTGCCGAGCTTTGAACGGATCATGATCGAGACg < 2:433334/109‑1 (MQ=255) cAACTGGGAGCAGGCCCTGCGCCAGTGGGCCGACCAGGCCTTGGCGCGCGGGCAGACCAGCCTGCTGGACAGCGCAGTGCCGAGCTTTGAACGGATCATGATCGAGACg > 1:433334/1‑109 (MQ=255) aaCTGGGAGCAGGCCCTGCGCCAGTGGGCCGACCAGGCCTTGGCGCGCGGGCAGACCAGCCTGCTGGACAGCGCAGTGCCGAGCTTTGAACGGATCATGATCGAGACGGCACTCAAGCACACCGCCGGCCGCCGTCGCGATGCTGCGCTg > 2:737451/1‑150 (MQ=255) tGGGAGCAGGCCCTGCGCCAGTGGGCCGACCAGGCCTTGGCGCGCGGGCAGACCAGCCTGCTGGACAGCGCAGTGCCGAGCTTTGAACGGATCATGATCGAGACGGCACTCAAGCACACCGCCGGCCGCCGTCGCGATGCTGCGCTGTTg > 1:539354/1‑150 (MQ=255) tGGGAGCAGGCCCTGCGCCAGTGGGCCGACCAGGCCTTGGCGCGCGGGCAGACCAGCCTGCTGGACAGCGCAGTGCCGAGCTTTGAACGGATCATGATCGAGACGGCACTCAAGCACACCGCCGGCCGCCGTCGCGATGCTGCGCTGTTg > 1:637535/1‑150 (MQ=255) gggAGCAGGCCCTGCGCCAGTGGGCCGACCAGGCCTTGGCGCGCGGGCAGACCAGCATGCTGGACAGCGAAGAGGCTAGTTTTGAACGGCTCATGATCGGCACGGTGCTCAAGGAGACCGGCGGCCGCCGTCGCGATGCTGCGCTGTTGc > 1:377086/1‑150 (MQ=255) aGCAGGCCCTGCGCCAGTGGGCCGACCAGGCCTTGGCGCGCGGGCAGACCAGCCTGCTGGACAGCGCAGTGCCGAGCTTTGAACGGATCATGATCGAGACGGCACTCAAGCACACCGCCGGCCGCCGTCGCGATGCTGCGCTGTTGCTgg < 2:457354/150‑1 (MQ=255) gCCCTGCGCCAGTGGGCCGACCAGGCCTTGGCGCGCgggcctgctcccagttggttaccggcgcggcatcgtgtggcaggttcagca > 2:400315‑M2/1‑36 (MQ=255) gCCCTGCGCCAGTGGGCCGACCAGGCCTTGGCGCGCgggcctgctcccagttggttaccggcgcggcatcgtgtggcaggttcagca < 1:400315‑M2/87‑52 (MQ=255) gCCCTGCGCCAGTGGGCCGACCAGGCCTTGGCGCGCGGGCAGACCAGCCTGCTGGACAGCGCAGTGCCGAGCt > 1:504072/1‑73 (MQ=255) gCCCTGCGCCAGTGGGCCGACCAGGCCTTGGCGCGCGGGCAGACCAGCCTGCTGGACAGCGCAGTGCCGAGCt < 2:504072/73‑1 (MQ=255) gCCCTGCGCCAGTGGGCCGACCAGGCCTTGGCGCGCGGGCAGACCAGCCTGCTGGACAGCGCAGTGCCGAGCTTTGAACGGATCATGATCGAGACGGCACTCAAGCACACCGCCGGCCGCCGTCGCGATGCTGCGCTGTTGCTGGGTTgg < 1:631271/150‑1 (MQ=255) cccTGCGCCAGTGGGCCGACCAGGCCTTGGCGCGCGGGCAGACCAGCCTGCTGGACAGCGCAGTGCCGAGCTTTGAACGGATCATGATCGAGACGGCACTCAAGCACACCGCCGGCCGCCGCGGCGATGCTGCGCTGTTGCTGGGTTggg < 1:743892/150‑1 (MQ=255) ccTGCGCCAGTGGGCCGACCAGGCCTTGGCGCGCgggcctgctcccagttggttaccggcgcggcatcgtgtggcaggttcagcagttctggtggcaggtcgccgatcagcacttcgcggctggaggccatcacggtgattcagcggcag < 1:793343‑M2/150‑117 (MQ=255) ccTGCGCCAGTGGGCCGACCAGGCCTTGGCGCGCGGGCAGACCAGCCTGCTGGACAGCGCAGTGCCGa < 2:655196/68‑1 (MQ=255) ccTGCGCCAGTGGGCCGACCAGGCCTTGGCGCGCGGGCAGACCAGCCTGCTGGACAGCGCAGTGCCGa > 1:655196/1‑68 (MQ=255) ccTGCGCCAGTGGGCCGACCAGGCCTTGGCGCGCGGGCAGACCAGCCTGCTGGACAGCGCAGTGCCGAGCTTTGAACGGATCATGATCGAGACGGCACTCAAGCACACCGCCGgccgcc > 2:402145/1‑119 (MQ=255) ccTGCGCCAGTGGGCCGACCAGGCCTTGGCGCGCGGGCAGACCAGCCTGCTGGACAGCGCAGTGCCGAGCTTTGAACGGATCATGATCGAGACGGCACTCAAGCACACCGCCGgccgcc < 1:402145/119‑1 (MQ=255) ccTGCGCCAGTGGGCCGACCAGGCCTTGGCGCAggcctgctcccagttggttaccggcgcggcatcgtgtggcaggttcagcagttctggtggcaggtcgccgatcagcacttcgcggctggaggccatcacggtgatccagcggcagg < 1:377602‑M2/150‑117 (MQ=255) cTGCGCCAGTGGGCCGACCAGGCCTTGGCGCGCGGGCAGACCAGCCTGCTGGACAGCGCAGTGCCGAGCTTTGAACGGATCATGATCGAGACGGCACTCAAGCACACCGCCGGCCGCCGTCGCGATGCTGCGCTGtt > 2:109271/1‑137 (MQ=255) cTGCGCCAGTGGGCCGACCAGGCCTTGGCGCGCGGGCAGACCAGCCTGCTGGACAGCGCAGTGCCGAGCTTTGAACGGATCATGATCGAGACGGCACTCAAGCACACCGCCGGCCGCCGTCGCGATGCTGCGCTGtt < 1:109271/137‑1 (MQ=255) | CATGGCCGGGCAATGTGCGACAGATGGAGAACACCTGCCGCTGGATCACCGTGATGGCCTCCAGCCGCGAAGTGCTGATCGGCGACCTGCCACCAGAACTGCTGAACCTGCCACACGATGCCGCGCCGGTAACCAACTGGGAGCAGGCCCTGCGCCAGTGGGCCGACCAGGCCTTGGCGCGCGGGCAGACCAGCCTGCTGGACAGCGCAGTGCCGAGCTTTGAACGGATCATGATCGAGACGGCACTCAAGCACACCGCCGGCCGCCGTCGCGATGCTGCGCTGTTGCTGGGTTGGGG > NC_002947/5756000‑5756297 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |