New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5971629	15 (0.510)	5 (0.180)	5/236	NT	24.8%	coding (153/222 nt)	PP_5237	hypothetical protein
	?	NC_002947	= 5971643	16 (0.560)					coding (167/222 nt)	PP_5237	hypothetical protein

CACTGGCTATTCTTTGCCCAGCCGCAGGAAGCGGCATTTTCCAGCAACAACGGAGTGTTCATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5971498‑5971629 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgacAGGCCGTTGGCCAGGTCGGTTTC  <  NC_002947/5971643‑5971621                                                                                                                                                             CACTGGCTATTCTTTGCCCAGCCGCAGGAAGCGGCATTTTCCAGCAACAACGGAGTGTTCATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGACAGGCCGTTGGCCAGGTCG       <  1:206614/150‑1                                                       GTGTTCATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGACAGGCCGTTGGCCAGGTCGGTTTC  <  2:501104/101‑1                                                       GTGTTCATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGACAGGCCGTTAGCCAGGTCGGTTTC  >  1:501104/1‑101                                                                                    CCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGACAGGCCGTTGGCCAGGTCGG      <  1:382596/68‑1                                                                                    CCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGACAGGCCGTTGGCCAGGTCGG      >  2:382596/1‑68                                                                                                                                                             CACTGGCTATTCTTTGCCCAGCCGCAGGAAGCGGCATTTTCCAGCAACAACGGAGTGTTCATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5971498‑5971629 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgacAGGCCGTTGGCCAGGTCGGTTTC  <  NC_002947/5971643‑5971621

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.