| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5971629 | 15 (0.510) | 5 (0.180) | 5/236 | NT | 24.8% | coding (153/222 nt) | PP_5237 | hypothetical protein |
| ? | NC_002947 | = 5971643 | 16 (0.560) | coding (167/222 nt) | PP_5237 | hypothetical protein | |||||
GGCGTTGGCAGCACTGGCTATTCTTTGCCCAGCCGCAGGAAGCGGCATTTTCCAGCAACAACGGAGTGTTCATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGACCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGAAATAGCTGCAAAAATTCGGACTAGATACGACTAGTTAGAACGCTGCAACATCCACATCAAGCTGAATACCACCTTGACCATTTT > NC_002947/5971487‑5971777 | ggCGTTGGCAGCACTGGCTATTCTTTGCCCAGCCGCAGGAAGCGGCATTTTCCAGCAACAACGGAGTGTTCATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGACCTGGCCa > 2:524291/1‑150 (MQ=39) caCTGGCTATTCTTTGCCCAGCCGCAGGAAGCGGCATTTTCCAGCAACAACGGAGTGTTCATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGACaggccgttggccaggtcg < 1:206614‑M1/150‑19 (MQ=255) ttCTTTGCCCAGCCGCAGGAAGCGGCATTTTCCAGCAACAACGGATTGTTCATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGACCTGGCCAACGGCCTGTCGGGGAAGTTg < 1:568511/150‑1 (MQ=255) cgtgAAGCGGCAGTGTCCAGCAACAACGCAGTGTTCATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGACCTGGCCAACGGGCTGTCGCGGAAGTTGCGCCCGGTGACGAgc < 2:442119/147‑1 (MQ=17) cAGCAACAACGGAGTGTTCATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGACCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGtt < 1:544298/150‑1 (MQ=255) cGGAGTGTTCATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGACCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGAAATa < 1:524291/150‑1 (MQ=255) gtgtTCATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGACaggccgttggccaggtcggtttc < 2:501104‑M1/101‑24 (MQ=255) gtgtTCATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGACaggccgttagccaggtcggtttc > 1:501104‑M1/1‑78 (MQ=255) tCATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGACCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGAAATAGCTGCaaa > 2:214968/1‑150 (MQ=255) aTGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGACCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGAAATAGCTGCaaaaa > 1:609192/1‑150 (MQ=255) gTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGACCTGGCCAACGGCCTGTCGGGGAAGTTgc > 2:770491/1‑98 (MQ=255) gTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGACCTGGCCAACGGCCTGTCGGGGAAGTTgc < 1:770491/98‑1 (MQ=255) tctcTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGACCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGAAATAGCTGCAAAAATTc > 2:280931/1‑150 (MQ=255) gTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGACCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGAAATAGCTGCAAAAATTCGGACTAGATACg > 2:36426/1‑150 (MQ=255) aGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGACCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGAAATAGCTGCAAAAATTCGGACTAGATACGACTAGt < 2:116661/150‑1 (MQ=255) ccGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGACaggccgttggccaggtcgg > 2:382596‑M1/1‑49 (MQ=255) ccGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGACaggccgttggccaggtcgg < 1:382596‑M1/68‑20 (MQ=255) gCAGGCACCGGCGGTCAGCGTCGAAACCGACCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGAAATAGCTGCAAAAATTCGGACTAGATACGACTAGTTAGAACGCTGCAACATCcac < 2:609192/150‑1 (MQ=255) ccGGCGGTCAGCGTCGAAACCGACCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGAAATAGCTGCAAAAATTCGGACTAGATACGACTAGTTAGAACGCTGCAACATCCACATCAAGc > 2:620445/1‑150 (MQ=255) tCAGCGTCGAAACCGACCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGAAATAGCTGCAAAAATTCGGACTAGATACGACTAGTTAGAACGCTGCAACATCCACATCAAGCTGAATac > 1:601403/1‑150 (MQ=255) gAAACCGACCTGGCTAACGGCCTgtcggtttcgacgctgaccgccggtgcctgcacgcctacctgggcgcggctgtggacgagggctagagacatgaacac > 1:501104‑M2/1‑23 (MQ=255) gAAACCGACCTGGCCAACGGCCTgtcggtttcgacgctgaccgccggtgcctgcacgcctacctgggcgcggctgtggacgagggctagagacatgaacac < 2:501104‑M2/101‑79 (MQ=255) ccGACCTGGCCAACGGCCTgtcggtttcgacgctgaccgccggtgcctgcacgcctacctgggcgcgg > 2:382596‑M2/1‑19 (MQ=255) ccGACCTGGCCAACGGCCTgtcggtttcgacgctgaccgccggtgcctgcacgcctacctgggcgcgg < 1:382596‑M2/68‑50 (MQ=255) cGACCTGGCCAACGGCCTgtcggtttcgacgctgaccgccggtgcctgcacgcctacctgggcgcggctgtggacgagggctagagacatgaacactccgttgttgctggaaaatgccgcttcctgcggctgggcaaagaatagccagtg < 1:206614‑M2/150‑133 (MQ=255) aCCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGAAATAGCTGCAAAAATTCGGACTAGATACGACTAGTTAGAACGCTGCAACATCCACATCAAGCTGAATACCACCTTGACCAtttt < 1:620445/150‑1 (MQ=255) | GGCGTTGGCAGCACTGGCTATTCTTTGCCCAGCCGCAGGAAGCGGCATTTTCCAGCAACAACGGAGTGTTCATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCGACCTGGCCAACGGCCTGTCGGGGAAGTTGCGCCCGGTGCAGAGCGGCGGCGGCAGCAGGTTTTCGAAATAGCTGCAAAAATTCGGACTAGATACGACTAGTTAGAACGCTGCAACATCCACATCAAGCTGAATACCACCTTGACCATTTT > NC_002947/5971487‑5971777 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |