New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6004770 =	41 (1.390)	4 (0.140)	4/236	NT	9.6%	coding (643/891 nt)	PP_5259	LysR family transcriptional regulator
	?	NC_002947	6004792 =	36 (1.270)					coding (665/891 nt)	PP_5259	LysR family transcriptional regulator

CACTGCGCATTGCATGGTTCCACGGCACCACCAGGCTACCGTCGGCCAGTTCCTTCGCCGCCAGGTAGCGCGGCACCAGCGCTACCCCGCACCCGGCCTGTGCTGCACTCAACGCCATATAGAACGTATCGAAGCGCGGCCCGTGGTAAGCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6004923‑6004770 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgctTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTAGCGCTGGTGCCGCGCTACCTGGCGGCGAAGGAACTGGCCGACGGTAGCCTGGTGGTGCCGTGGAACCATGCAATGCGCAGTGCCGGAGCGCATTACCT  >  NC_002947/6004792‑6004939                                                                                                                                                                                                                                                                                                                CACTGCGCATTGCATGGTTCCACGGCACCACCAGGCTACCGTCGGCCAGTTCCTTCGCCGCCAGGTAGCGCGGCACCAGCGCTACCCCGCACCCGGCCTGTGCTGCACTCAACGCCATATAGAACGTATCGAAGCGCGGCCCGTGGTAAG                                                                                                                                                          <  1:710482/150‑1   CTGCGCATTGCATGGTTCCACGGCACCACCAGGCTACCGTCGGCCAGTTCCTTCGCCGCCAGGTAGCGCGGCACCAGCGCTACCCCGCACCCGGCCTGTGCTGCACTCAACGCCATATAGAACGTATCGAAGCGCGGCCCGTGGTAAGCG                                                                                                                                                        <  2:220040/150‑1                                                                                   TACCCCGCACCCGGCCTGTGCTGCACTCAACGCCATATAGAACGTATCGAAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGT                                                                                                                            >  1:452812/1‑98                                                                                   TACCCCGCACCCGGCCTGTGCTGCACTCAACGCCATATAGAACGTATCGAAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGT                                                                                                                            <  2:452812/98‑1                                                                                                                                    AAGCGCGGCCCGTGGTAAGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTAGCG                                                                                                 >  1:663587/1‑76                                                                                                                                    AAGCGCGGCCCGTGGTAAGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTAGCG                                                                                                 <  2:663587/76‑1                                                                                                                                                      GCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTAGCGCTGGTGCCGCGCTACCTGGCGGCGAAGGAACTGGCCGACGGTAGCCTGGTGGTGCCGTGGAACCATGCAATGCGCAGTGCCGGAGCGCATTA     >  2:701874/1‑150                                                                                                                                                         CTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTAGCGCTGGTGCCGCGCTACCTGGCGGCGAAGGAACTGGCCGACGGTAGCCTGGTGGTGCCGTGGAACCATGCAATGCGCAGTGCCGGAGCGCATTACCT  <  1:203451/150‑1                                                                                                                                                                                                                                                                                                                CACTGCGCATTGCATGGTTCCACGGCACCACCAGGCTACCGTCGGCCAGTTCCTTCGCCGCCAGGTAGCGCGGCACCAGCGCTACCCCGCACCCGGCCTGTGCTGCACTCAACGCCATATAGAACGTATCGAAGCGCGGCCCGTGGTAAGCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6004923‑6004770 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgctTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTAGCGCTGGTGCCGCGCTACCTGGCGGCGAAGGAACTGGCCGACGGTAGCCTGGTGGTGCCGTGGAACCATGCAATGCGCAGTGCCGGAGCGCATTACCT  >  NC_002947/6004792‑6004939

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.