New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6004770 =	41 (1.390)	4 (0.140)	4/236	NT	9.6%	coding (643/891 nt)	PP_5259	LysR family transcriptional regulator
	?	NC_002947	6004792 =	36 (1.270)					coding (665/891 nt)	PP_5259	LysR family transcriptional regulator

GGAGGTGGTGCCGGTGTGTGCGCCAGAGCTGCTGGCCGGGCGCAAGCTGGCCGGTGCCGAGGAGCTGGCCGAGCTGGTGCTGCTGCAAAGCACCTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTAGCGCTGGTGCCGCGCTACCTGGCGGCGAAGGAACTGGCCGACGGTAGCCTGGTGGTGCCGTGGAACCATGCAATGCG  >  NC_002947/6004622‑6004918                                                                                                                                                     |                                                                                                                                                     aggtaatgcgctccggcactgcgcattgcatggttccacggcaccaccaggctaccgtcggccagttccttcgccgccaggtagcgcggcaccagcgctaccccgcacccggcctgtgctgcactcaacgccatatagaacgtatcgaAg                                                                                                                                                     <  1:203451‑M1/2‑1 (MQ=255)    taatgcgctccggcactgcgcattgcatggttccacggcaccaccaggctaccgtcggccagttccttcgccgccaggtagcgcggcaccagcgctaccccgcacccggcctgtgctgcactcaacgccatatagaacgtatcgaAgcgc                                                                                                                                                  >  2:701874‑M1/146‑150 (MQ=255)           ccGGTGTGTGCGCCAGAGCTGCTGGCCGGGCGCAAGCTGGCCGGTGCCGAGGAGCTGGCCGAGCTGGTGCTGCTGCAAAGCACCTCGCGCCACCCGCACTTGCCTTAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCAc                                                                                                                                           >  2:20878/1‑150 (MQ=255)              gtgtgtGCGCCAGAGCTGCTGGCCGGGCGCAAGCTGGCCGGTGCCGAGGAGCTGGCCGAGCTGGTGCTGCTGCAAAGCACCTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCt                                                                                                                                                 >  2:296524/1‑141 (MQ=255)              gtgtgtGCGCCAGAGCTGCTGGCCGGGCGCAAGCTGGCCGGTGCCGAGGAGCTGGCCGAGCTGGTGCTGCTGCAAAGCACCTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCt                                                                                                                                                 <  1:296524/141‑1 (MQ=255)                              tcctttccGGCCTCAAGCTGGCCGGTGCCGAGAATCGGGACGAGCTGGTGCCGCTTCAAAGCACCTCGCGCCCGGAGGCCTGGCATGAGTCGTTCCTGCAGCAGGACCTGTAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGAGACGt                                                                                                                        <  2:143743/144‑1 (MQ=255)                               gctgGCCGGGCGCAAGCTGGCCGGTGCCGAGGAGCTGGCCGAGCTGGTGCTGCAGCAAAGCACCTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGGTACGtt                                                                                                                       >  1:143743/1‑150 (MQ=255)                                       ggCGCAAGCTGGCCGGTGCCGAGGAGCTGGCCGAGCTAGGCCTTCTGCAAAGCACCTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATgg                                                                                                               <  1:606584/150‑1 (MQ=255)                                        gcgcAAGCTGGCCGGTGCCGAGGAGCTGGCCGAGCTGGTGCTGCTGCAAAGCACCTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGc                                                                                                              >  2:180039/1‑150 (MQ=255)                                                tGGCCAGTGCCGAGGAGCTGGCCGAGCTGGTGCTGCTGCAAAGCACCTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGAGCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTg                                                                                                      >  1:263056/1‑150 (MQ=255)                                                  gCCGGTGCCGAGGAGCTGGCCGAGCTGGTGATGCTGCATAGCACCTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTgca                                                                                                    <  2:386407/150‑1 (MQ=255)                                                   ccGGTGCCGAGGAGCTGGCCGAGCTGGTGCTGCTGCAAAGCACCTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTgcag                                                                                                   >  2:203451/1‑150 (MQ=255)                                                       ggCCGAGGAGCTGGCCGAGCTGGTGCTGCTGCAAAGCACCTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGcaca                                                                                               <  2:117192/149‑1 (MQ=255)                                                                 cTGGCCGAGCTGGTGCTGCTGCAAAGCACCTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGc                                                                                     >  2:221397/1‑150 (MQ=255)                                                                      cGAGCTGGTGCTGCTGCAAAGCACCTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGt                                                                                <  1:180039/150‑1 (MQ=255)                                                                       gAGCTGGTGCTGCTGCAAAGCACCTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGt                                                                                                                        >  2:470321/1‑109 (MQ=255)                                                                       gAGCTGGTGCTGCTGCAAAGCACCTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGt                                                                                                                        <  1:470321/109‑1 (MQ=255)                                                                       gAGCTGGTGCTGCTGCAAAGCACCTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTa                                                                               <  1:327478/150‑1 (MQ=255)                                                                        aGCTGGTGCTGCTGCAAAGCACCTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTAg                                                                              <  1:221397/150‑1 (MQ=255)                                                                                ctgctgcAAAGCACCTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACg                                                                                                                                          >  1:732870/1‑82 (MQ=255)                                                                                ctgctgcAAAGCACCTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACg                                                                                                                                          <  2:732870/82‑1 (MQ=255)                                                                                 tgctgcAAAGCACCTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTc                                                                                                                               <  1:531574/92‑1 (MQ=255)                                                                                 tgctgcAAAGCACCTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTc                                                                                                                               >  2:531574/1‑92 (MQ=255)                                                                                    tgcAAAGCACCTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTAGCGCTGGTGCcgc                                                                  >  1:11669/1‑150 (MQ=255)                                                                                    tgcAAAGCACCTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTAGCGCTGGTGCcgc                                                                  >  2:716011/1‑150 (MQ=255)                                                                                      cAAAGCACCTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGGTGAGTGCAGCACAGGCCGGGTGCGGGGTAGCGCTGGTGCCgcgc                                                                >  1:600644/1‑150 (MQ=255)                                                                                             ccTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGtt                                                                                                                       <  2:638552/88‑1 (MQ=255)                                                                                             ccTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGtt                                                                                                                       >  1:638552/1‑88 (MQ=255)                                                                                              cTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCt                                                                                                                     <  2:144407/89‑1 (MQ=255)                                                                                              cTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCt                                                                                                                     >  1:144407/1‑89 (MQ=255)                                                                                               tCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCtt                                                                                                                                                <  1:143476/61‑1 (MQ=255)                                                                                               tCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCtt                                                                                                                                                >  2:143476/1‑61 (MQ=255)                                                                                                cgctaccccgcacccggcctgtgctgcactcaacgccatatagaacgtatcgaAGCGCTTACCACGGGCCGCGCtt                                                                                                                                <  2:663587‑M1/23‑1 (MQ=255)                                                                                                cgctaccccgcacccggcctgtgctgcactcaacgccatatagaacgtatcgaAGCGCTTACCACGGGCCGCGCtt                                                                                                                                >  1:663587‑M1/54‑76 (MQ=255)                                                                                                           gCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCg                                                                                    <  2:650529/109‑1 (MQ=255)                                                                                                           gCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCg                                                                                    >  1:650529/1‑109 (MQ=255)                                                                                                            ccTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTAGCGCTGGTGCCGCGCTACCTGGCGGCGAAGGAACTgg                                          <  2:183037/150‑1 (MQ=255)                                                                                                            ccTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTAGCGCTGGTGCCGCGCTACCTGGCGGCGAAGGAACTgg                                          >  2:368556/1‑150 (MQ=255)                                                                                                                  aTGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTAGCGCTGGTGCCGCGCTACCTGGCGGCGAAGGAACTGGCCGACg                                    <  1:716011/150‑1 (MQ=255)                                                                                                                    gAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTAGCGCTGGTGCCGCGCTACCTGGCGGCGAAGGAACTGGCCGACGGt                                  >  2:785607/1‑150 (MQ=255)                                                                                                                        ggTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTAGCGCTGGTGCCGCGCTACTGGGGTGCGAAGGAACTGGCCGACGGTAGcc                              <  1:20878/150‑1 (MQ=255)                                                                                                                           actcaacgccatatagaacgtatcgaAGCGCGGCCCGTGGTAAGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTa                                                                               <  2:452812‑M1/72‑1 (MQ=255)                                                                                                                           actcaacgccatatagaacgtatcgaAGCGCGGCCCGTGGTAAGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTa                                                                               >  1:452812‑M1/27‑98 (MQ=255)                                                                                                                               ggAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTAGCGCTGGTGCCGCGCTACCTGGCGGCGAAGGAACTGGCCGACGGTAGCCTggtggt                       >  2:652304/1‑150 (MQ=255)                                                                                                                                 aGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTAGCGCTGGTGCCGCGCTACCTGGCGGCGAAGGAACTGGCCGACGGTAGCCTGGTGGTGc                     <  2:11669/150‑1 (MQ=255)                                                                                                                                            cAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTAGCGCTGGTGCCGCGCTACCTGGCGGCGAAGGAACTGGCCGACGGTAGCCTGGTGGTGCCGTGGAACCAt          <  2:552418/150‑1 (MQ=255)                                                                                                                                            cAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTAGCGCTGGTGCCGCGCTACCTGGCGGCGAAGGAACTGGCCGACGGTAGCCTGGTGGTGCCGTGGAACCAt          <  1:785607/150‑1 (MQ=255)                                                                                                                                                    cAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTAGCGCTGGTGCCGCGCTACCTGGCGGCGAAGGAACTGGCCGACGGTAGCCTGGTGGTGCCGTGGAACCATGCAATgcg  >  1:158087/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                     GGAGGTGGTGCCGGTGTGTGCGCCAGAGCTGCTGGCCGGGCGCAAGCTGGCCGGTGCCGAGGAGCTGGCCGAGCTGGTGCTGCTGCAAAGCACCTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTAGCGCTGGTGCCGCGCTACCTGGCGGCGAAGGAACTGGCCGACGGTAGCCTGGTGGTGCCGTGGAACCATGCAATGCG  >  NC_002947/6004622‑6004918

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.