New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6004770 =	41 (1.390)	4 (0.140)	4/236	NT	9.6%	coding (643/891 nt)	PP_5259	LysR family transcriptional regulator
	?	NC_002947	6004792 =	36 (1.270)					coding (665/891 nt)	PP_5259	LysR family transcriptional regulator

TGCTGGCCGGGCGCAAGCTGGCCGGTGCCGAGGAGCTGGCCGAGCTGGTGCTGCTGCAAAGCACCTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTAGCGCTGGTGCCGCGCTACCTGGCGGCGAAGGAACTGGCCGACGGTAGCCTGGTGGTGCCGTGGAACCATGCAATGCGCAGTGCCGGAGCGCATTACCT  >  NC_002947/6004651‑6004939                                                                                                                                              |                                                                                                                                                    tcctttccGGCCTCAAGCTGGCCGGTGCCGAGAATCGGGACGAGCTGGTGCCGCTTCAAAGCACCTCGCGCCCGGAGGCCTGGCATGAGTCGTTCCTGCAGCAGGACCTGTAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGAGACGt                                                                                                                                             <  2:143743/144‑1 (MQ=255)  gctgGCCGGGCGCAAGCTGGCCGGTGCCGAGGAGCTGGCCGAGCTGGTGCTGCAGCAAAGCACCTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGGTACGtt                                                                                                                                            >  1:143743/1‑150 (MQ=255)          ggCGCAAGCTGGCCGGTGCCGAGGAGCTGGCCGAGCTAGGCCTTCTGCAAAGCACCTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATgg                                                                                                                                    <  1:606584/150‑1 (MQ=255)           gcgcAAGCTGGCCGGTGCCGAGGAGCTGGCCGAGCTGGTGCTGCTGCAAAGCACCTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGc                                                                                                                                   >  2:180039/1‑150 (MQ=255)                   tGGCCAGTGCCGAGGAGCTGGCCGAGCTGGTGCTGCTGCAAAGCACCTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGAGCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTg                                                                                                                           >  1:263056/1‑150 (MQ=255)                     gCCGGTGCCGAGGAGCTGGCCGAGCTGGTGATGCTGCATAGCACCTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTgca                                                                                                                         <  2:386407/150‑1 (MQ=255)                      ccGGTGCCGAGGAGCTGGCCGAGCTGGTGCTGCTGCAAAGCACCTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTgcag                                                                                                                        >  2:203451/1‑150 (MQ=255)                          ggCCGAGGAGCTGGCCGAGCTGGTGCTGCTGCAAAGCACCTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGcaca                                                                                                                    <  2:117192/149‑1 (MQ=255)                                    cTGGCCGAGCTGGTGCTGCTGCAAAGCACCTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGc                                                                                                          >  2:221397/1‑150 (MQ=255)                                         cGAGCTGGTGCTGCTGCAAAGCACCTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGt                                                                                                     <  1:180039/150‑1 (MQ=255)                                          gAGCTGGTGCTGCTGCAAAGCACCTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGt                                                                                                                                             >  2:470321/1‑109 (MQ=255)                                          gAGCTGGTGCTGCTGCAAAGCACCTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGt                                                                                                                                             <  1:470321/109‑1 (MQ=255)                                          gAGCTGGTGCTGCTGCAAAGCACCTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTa                                                                                                    <  1:327478/150‑1 (MQ=255)                                           aGCTGGTGCTGCTGCAAAGCACCTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTAg                                                                                                   <  1:221397/150‑1 (MQ=255)                                                    tgctgcAAAGCACCTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTc                                                                                                                                                    <  1:531574/92‑1 (MQ=255)                                                    tgctgcAAAGCACCTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTc                                                                                                                                                    >  2:531574/1‑92 (MQ=255)                                                       tgcAAAGCACCTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTAGCGCTGGTGCcgc                                                                                       >  2:716011/1‑150 (MQ=255)                                                       tgcAAAGCACCTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTAGCGCTGGTGCcgc                                                                                       >  1:11669/1‑150 (MQ=255)                                                         cAAAGCACCTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGGTGAGTGCAGCACAGGCCGGGTGCGGGGTAGCGCTGGTGCCgcgc                                                                                     >  1:600644/1‑150 (MQ=255)                                                                ccTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGtt                                                                                                                                            >  1:638552/1‑88 (MQ=255)                                                                ccTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGtt                                                                                                                                            <  2:638552/88‑1 (MQ=255)                                                                 cTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCt                                                                                                                                          <  2:144407/89‑1 (MQ=255)                                                                 cTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCt                                                                                                                                          >  1:144407/1‑89 (MQ=255)                                                                   cgctaccccgcacccggcctgtgctgcactcaacgccatatagaacgtatcgaAGCGCTTACCACGGGCCGCGCtt                                                                                                                                                     <  2:663587‑M1/23‑1 (MQ=255)                                                                   cgctaccccgcacccggcctgtgctgcactcaacgccatatagaacgtatcgaAGCGCTTACCACGGGCCGCGCtt                                                                                                                                                     >  1:663587‑M1/54‑76 (MQ=255)                                                                      taccccgcacccggcctgtgctgcactcaacgccatatagaacgtatcgaagcgcttaccacgggccgcgctTCGATACGTTCTATATGGCGTTGAGt                                                                                                                            <  2:452812‑M2/26‑1 (MQ=255)                                                                      taccccgcacccggcctgtgctgcactcaacgccatatagaacgtatcgaagcgcttaccacgggccgcgctTCGATACGTTCTATATGGCGTTGAGt                                                                                                                            >  1:452812‑M2/73‑98 (MQ=255)                                                                              gCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCg                                                                                                         >  1:650529/1‑109 (MQ=255)                                                                              gCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCg                                                                                                         <  2:650529/109‑1 (MQ=255)                                                                               ccTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTAGCGCTGGTGCCGCGCTACCTGGCGGCGAAGGAACTgg                                                               >  2:368556/1‑150 (MQ=255)                                                                               ccTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTAGCGCTGGTGCCGCGCTACCTGGCGGCGAAGGAACTgg                                                               <  2:183037/150‑1 (MQ=255)                                                                                     aTGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTAGCGCTGGTGCCGCGCTACCTGGCGGCGAAGGAACTGGCCGACg                                                         <  1:716011/150‑1 (MQ=255)                                                                                       gAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTAGCGCTGGTGCCGCGCTACCTGGCGGCGAAGGAACTGGCCGACGGt                                                       >  2:785607/1‑150 (MQ=255)                                                                                           ggTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTAGCGCTGGTGCCGCGCTACTGGGGTGCGAAGGAACTGGCCGACGGTAGcc                                                   <  1:20878/150‑1 (MQ=255)                                                                                              actcaacgccatatagaacgtatcgaAGCGCGGCCCGTGGTAAGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTa                                                                                                    <  2:452812‑M1/72‑1 (MQ=255)                                                                                              actcaacgccatatagaacgtatcgaAGCGCGGCCCGTGGTAAGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTa                                                                                                    >  1:452812‑M1/27‑98 (MQ=255)                                                                                                  ggAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTAGCGCTGGTGCCGCGCTACCTGGCGGCGAAGGAACTGGCCGACGGTAGCCTggtggt                                            >  2:652304/1‑150 (MQ=255)                                                                                                    aGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTAGCGCTGGTGCCGCGCTACCTGGCGGCGAAGGAACTGGCCGACGGTAGCCTGGTGGTGc                                          <  2:11669/150‑1 (MQ=255)                                                                                                               cAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTAGCGCTGGTGCCGCGCTACCTGGCGGCGAAGGAACTGGCCGACGGTAGCCTGGTGGTGCCGTGGAACCAt                               <  1:785607/150‑1 (MQ=255)                                                                                                               cAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTAGCGCTGGTGCCGCGCTACCTGGCGGCGAAGGAACTGGCCGACGGTAGCCTGGTGGTGCCGTGGAACCAt                               <  2:552418/150‑1 (MQ=255)                                                                                                                       cAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTAGCGCTGGTGCCGCGCTACCTGGCGGCGAAGGAACTGGCCGACGGTAGCCTGGTGGTGCCGTGGAACCATGCAATgcg                       >  1:158087/1‑150 (MQ=255)                                                                                                                       aagcgcggcccgtggtaagcgctTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTAgcg                                                                                                 >  1:663587‑M2/24‑76 (MQ=255)                                                                                                                       aagcgcggcccgtggtaagcgctTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTAgcg                                                                                                 <  2:663587‑M2/53‑1 (MQ=255)                                                                                                                          CGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTAGCGCTGGTGCCGCGCTACCTGGCGGCGAAGGAACTGGCCGACGGTAGCCTGGTGGTGCCGTGGAACCATGCAATGCGCAg                    <  2:220040‑M1/150‑1 (MQ=255)                                                                                                                            CTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTAGCGCTGGTGCCGCGCTACCTGGCGGCGAAGGAACTGGCCGACGGTAGCCTGGTGGTGCCGTGGAACCATGCAATGCGCAGTg                  <  1:710482‑M1/150‑1 (MQ=255)                                                                                                                             ttACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTAGCGCTGGTGCCGCGCTACCTGGCGGCGAAGGAACTGGCCGACGGTAGCCTGGTGGTGCCGTGGAACCATGCAATGCGCAGTGc                 >  2:125481/1‑150 (MQ=255)                                                                                                                                ccACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTAGCGCTGGTGCCGCGCTACCTGGCGGCGAAGGAACTGGCCGACGGTAGcc                                                   <  2:56925/113‑1 (MQ=255)                                                                                                                                ccACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTAGCGCTGGTGCCGCGCTACCTGGCGGCGAAGGAACTGGCCGACGGTAGcc                                                   >  1:56925/1‑113 (MQ=255)                                                                                                                                     ggCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTAGCGCTGGTGCCGCGCTACCTGGCGGCGAAGGAACTGGCCGACGGTAGCCTGGTGGTGCCGTGGAACCATGCAATGCGCAGTGCCGGAgcgc         <  1:368556/150‑1 (MQ=255)                                                                                                                                         gcgctTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTAGCGCTGGTGCCGCGCTACCTGGCGGCGAAGGAACTGGCCGACGGTAGCCTGGTGGTGCCGTGGAACCATGCAATGCGCAGTGCCGGAGCGCATTa     >  2:701874‑M2/6‑150 (MQ=255)                                                                                                                                            ctTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTAGCGCTGGTGCCGCGCTACCTGGCGGCGAAGGAACTGGCCGACGGTAGCCTGGTGGTGCCGTGGAACCATGCAATGCGCAGTGCCGGAGCGCATTACCt  <  1:203451‑M2/148‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                    TGCTGGCCGGGCGCAAGCTGGCCGGTGCCGAGGAGCTGGCCGAGCTGGTGCTGCTGCAAAGCACCTCGCGCCCGGAGGCCTGGCATGAGTGGTTCCTGGAGCAGGACCTGCAGAGCGTCAGCGCTTACCACGGGCCGCGCTTCGATACGTTCTATATGGCGTTGAGTGCAGCACAGGCCGGGTGCGGGGTAGCGCTGGTGCCGCGCTACCTGGCGGCGAAGGAACTGGCCGACGGTAGCCTGGTGGTGCCGTGGAACCATGCAATGCGCAGTGCCGGAGCGCATTACCT  >  NC_002947/6004651‑6004939

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.