New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	332790 =	36 (1.220)	3 (0.110)	3/220	NT	8.8%	intergenic (‑102/‑74)	PP_0273/PP_5435	hypothetical protein/hypothetical protein
	?	NC_002947	332821 =	30 (1.140)					intergenic (‑133/‑43)	PP_0273/PP_5435	hypothetical protein/hypothetical protein

CTCGGGGTGGCGAGGGTTTGTGGGGAATCTCTTGGCCATGCTCATCCTCCCTCAGGGCTGCCTGTTCTGAACGTAAACTCCTCGCCCAGCCCGTCGTTTGACGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTGCGCCGGGACAACACAATGCGGGTCATAACGAAAGCGGCGGTTACCAAGGCGATTGAAGTCCACGGCCAGTGGAAAGCGCCCCTAAGCCTG  >  NC_002947/332644‑332938                                                                                                                                                   |                                                                                                                                                      cTCGGGGTGGCGAGGGTTTGTGGGGAATCTCTTGGCCATGCTCATCCTCCCTCAGGGCTGCCTGTTCTGAACGTAAACTCCTCGCCCAGCCCGTCGTTTGACGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATcc                                                                                                                                                    >  1:692185/1‑150 (MQ=255)  cgtcgccctgtcgaaggtcgtcagccacaggcttaggggcgctttccactggccgtggacttcaatcgccttggtaaccgccgctttcgttatgacccgcattgtgttgtcccggcgcaccaacatagggtggaaaatatctccgATCCa                                                                                                                                                   >  1:380334‑M1/146‑150 (MQ=255)   gtcgccctgtcgaaggtcgtcagccacaggcttaggggcgctttccactggccgtggacttcaatcgccttggtaaccgccgctttcgttatgacccgcattgtgttgtcccggcgcaccaacatagggtggaaaatatctccgATCCAg                                                                                                                                                  <  1:563117‑M1/6‑1 (MQ=255)         ctgtcgaaggtcgtcagccacaggcttaggggcgctttccactggccgtggacttcaatcgccttggtaaccgccgctttcgttatgacccgcattgtgttgtcccggcgcaccaacatagggtggaaaatatctccgATCCAGATATCt                                                                                                                                            >  2:763699‑M1/139‑150 (MQ=255)            tcgaaggtcgtcagccacaggcttaggggcgctttccactggccgtggacttcaatcgccttggtaaccgccgctttcgttatgacccgcattgtgttgtcccggcgcaccaacatagggtggaaaatatctccgATCCAGATATCTGGt                                                                                                                                         <  1:549887‑M1/15‑1 (MQ=255)                gTTTGTGGGGAATCTCTTGGCCATGCTCATCCTCCCTCAGGGCTGCCTGTTCTGAACGTAAACTCCTCGCCCAGCCCGTCGTTTGACGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAc                                                                                                                                     >  2:384664/1‑150 (MQ=255)                  ttGTGGGGAATCTCTTGGCCATGCTCATCCTCCCTCAGGGCTGCCTGTTCTGAACGTAAACTCCTCGCCCAGCCCGTCGTTTGACGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑Ag                                                                                                                                  >  2:23601/1‑150 (MQ=255)                            tctcTTGGCCATGCTCATCCTCCCTCAGGGCTGCCTGTTCTGAACGTAAACTCCTCGCCCAGCCCGTCGTTTGACGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTgg                                                                                                                                          >  1:764164/1‑133 (MQ=255)                            tctcTTGGCCATGCTCATCCTCCCTCAGGGCTGCCTGTTCTGAACGTAAACTCCTCGCCCAGCCCGTCGTTTGACGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTgg                                                                                                                                          <  2:764164/133‑1 (MQ=255)                            tctcTTGGCCATGCTCATCCTCCCTCAGGGCTGCCTGTTCTGAACGTAAACTCCTCGCCCAGCCCGTCGTTTGACGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGTAt                                                                                                                        <  2:692185/150‑1 (MQ=255)                                ttGGCCATGCTCATCCTCCCTCAGGGCTGCCTGTTCTGAACGTAAACTCCTCGCCCAGCCCGTCGTTTGACGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGga                                                                                                                    <  2:14670/150‑1 (MQ=255)                                       tGCTCATCCTCCCTCAGGGCTGCCTGTTCTGAACGTAAACTCCTCGCCCAGCCCGTCGTTTGACGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATAttt                                                                                                             <  1:23601/150‑1 (MQ=255)                                             tcctccCTCAGGGCTGCCTGTTCTGAACGTAAACTCCTCGCCCAGCCCGTCGTTTGACGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCAcc                                                                                                       <  2:206042/150‑1 (MQ=255)                                             tcctccCTCAGGGCTGCCTGTTCTGAACGTAAACTCCTCGCCCAGCCCGTCGTTTGACGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCAcc                                                                                                       <  2:493241/150‑1 (MQ=255)                                                        ggCTGCCTGTTCTGAACGTAAACTCCTCGCCCAGCCCGTCGTTTGACGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGt                                                                                             <  1:593223/149‑1 (MQ=255)                                                        ggCTGCCTGTTCTGAACGTAAACTCCTCGCCCAGCCCGTCGTTTGACGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGt                                                                                             >  2:593223/1‑149 (MQ=255)                                                          cTGCCTGTTCTGAACGTAAACTCCTCGCCCAGCCCGTCGTTTGACGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTgcg                                                                                          >  1:99309/1‑150 (MQ=255)                                                               tGTTCTGAACGTAAACTCCTCGCCCAGCCCGTCGTTTGACGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTGCGCCggg                                                                                     >  1:642092/1‑150 (MQ=255)                                                                     gAACGTAAACTCCTCGCCCAGCCCGTCGTTTGACGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTGCGCCGGGacaaca                                                                               >  2:563117/1‑150 (MQ=255)                                                                       aCGTAAACTCCTCGCCCAGCCCGTCGTTTGACGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTcc                                                                                                          >  1:679901/1‑121 (MQ=255)                                                                       aCGTAAACTCCTCGCCCAGCCCGTCGTTTGACGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTcc                                                                                                          <  2:679901/121‑1 (MQ=255)                                                                           aaaCTCCTCGCCCAGCCCGTCGTTTGACGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTGCGCCGGGACAACACAATGc                                                                         >  2:205573/1‑150 (MQ=255)                                                                             aCTCCTCGCCCAGCCCGTCGTTTGACGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTGCGCCGGGACAACACAATGCgg                                                                       <  1:440843/150‑1 (MQ=255)                                                                               tcctcGCCCAGCCCGTCGTTTGACGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTGCGCCg                                                                                       >  2:345587/1‑132 (MQ=255)                                                                               tcctcGCCCAGCCCGTCGTTTGACGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTGCGCCg                                                                                       <  1:345587/132‑1 (MQ=255)                                                                                 ctcGCCCAGCCCGTCGTTTGACGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTGCGCCGGGACAACACAATGCGGGTCa                                                                   >  1:771517/1‑150 (MQ=255)                                                                                      ctaGCCCGTCGTTTGACGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTGCGCCGGGACAACACAATGCGGGTCATAACg                                                              >  2:596107/3‑150 (MQ=255)                                                                                      ccAGCCCGTCGTTTGACGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTGCGCCGGGACAACACAATGCGGGCCATAACg                                                              >  2:442165/1‑150 (MQ=255)                                                                                             gtcgtTTGACGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTGCGCCGGGACAACACAATGCGGGTCATAACGAAAgcgg                                                       >  1:85216/1‑150 (MQ=255)                                                                                                gtTTGACGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTGCGCCGGGACAACACAATGCGGGTCATAACGAAAGcggcgg                                                    <  1:489572/150‑1 (MQ=255)                                                                                                     aCGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTGCGCCGGGa                                                                                    <  1:563076/113‑1 (MQ=255)                                                                                                     aCGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTGCGCCGGGa                                                                                    >  2:563076/1‑113 (MQ=255)                                                                                                          cATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTGCGCCGGGACAACACAATGCg                                                                        <  2:210638/120‑1 (MQ=255)                                                                                                          cATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTGCGCCGGGACAACACAATGCg                                                                        >  1:210638/1‑120 (MQ=255)                                                                                                                 ccATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTGCGCCGGGACAACACAATGCGGGTCATAACGAAAGCGGCGGTTACCAAGGCGATTGaa                                   <  1:384664/150‑1 (MQ=255)                                                                                                                        accaacatagggtggaaaatatctccgATCCAGATATCTG‑TCAACCAGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTGCGCCGGGACAACACAATGCGGGTCATAACGAAAGCGGCGGTTACCAAGGCGATTGAAGTCCACg                            <  2:549887‑M1/123‑1 (MQ=255)                                                                                                                                  gTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGAt                                                                                                                        >  2:451876/1‑48 (MQ=255)                                                                                                                                  gTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGAt                                                                                                                        <  1:451876/48‑1 (MQ=255)                                                                                                                                  gTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTGCGCCGGGACAACACAATGCGGGTCATAACGAAAGCGGCGGTTACCAAgg                                           <  2:123049/125‑1 (MQ=255)                                                                                                                                  gTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTGCGCCGGGACAACACAATGCGGGTCATAACGAAAGCGGCGGTTACCAAgg                                           >  1:123049/1‑125 (MQ=255)                                                                                                                                   tCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTGCGCCGGGACAACACAATGCGGGTCATAACGAAAGCGGCGGTTACCAAGGCGATTGAAGTCCACGGCCAGTGGaaa                 <  2:771517/150‑1 (MQ=255)                                                                                                                                         aatatctccgATCCAGATATCTGTCAACC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTGCGCCGGGACAACACAATGCGGGTCATAACGAAAgcggcg                                                     >  1:623673‑M1/11‑108 (MQ=255)                                                                                                                                         aatatctccgATCCAGATATCTG‑TCAACCAGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTGCGCCGGGACAACACAATGCGGGTCATAACGAAAgcggcg                                                     <  2:623673‑M1/98‑1 (MQ=255)                                                                                                                                             tCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTGCGCCGGGACAACACAATGCGGGTCATAACGAAAGCGGCGGTTACCAAGGCGATTGAAGTCCACGGCCAGTGGAAAGCGCCCCTaa       <  2:635455/150‑1 (MQ=255)                                                                                                                                                 gcATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTCGTGCGCCGGGACAATACAATGCGGGTCATAACGAAAGCGGCGGTTACCAAGGCGATTGAAGTCCACGGCCAGTGGAAAGCGCCCCTAAGCCt   >  1:495731/1‑150 (MQ=255)                                                                                                                                                  cATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTGCGCCGGGACAACACAATGCGGGTCATAACGAAAGCGGCGGTTACCAAGGCGATTGAAGTCCACGGCCAGTGGAAAGCGCCCCTAAGCCtg  <  1:596107/150‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                      CTCGGGGTGGCGAGGGTTTGTGGGGAATCTCTTGGCCATGCTCATCCTCCCTCAGGGCTGCCTGTTCTGAACGTAAACTCCTCGCCCAGCCCGTCGTTTGACGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTGCGCCGGGACAACACAATGCGGGTCATAACGAAAGCGGCGGTTACCAAGGCGATTGAAGTCCACGGCCAGTGGAAAGCGCCCCTAAGCCTG  >  NC_002947/332644‑332938

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.