New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	332790 =	36 (1.220)	3 (0.110)	3/220	NT	8.8%	intergenic (‑102/‑74)	PP_0273/PP_5435	hypothetical protein/hypothetical protein
	?	NC_002947	332821 =	30 (1.140)					intergenic (‑133/‑43)	PP_0273/PP_5435	hypothetical protein/hypothetical protein

TTGGCCATGCTCATCCTCCCTCAGGGCTGCCTGTTCTGAACGTAAACTCCTCGCCCAGCCCGTCGTTTGACGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTGCGCCGGGACAACACAATGCGGGTCATAACGAAAGCGGCGGTTACCAAGGCGATTGAAGTCCACGGCCAGTGGAAAGCGCCCCTAAGCCTGTGGCTGACGACCTTCGACAGGGCGACG  >  NC_002947/332675‑332965                                                                                                                                                    |                                                                                                                                                 ttGGCCATGCTCATCCTCCCTCAGGGCTGCCTGTTCTGAACGTAAACTCCTCGCCCAGCCCGTCGTTTGACGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGga                                                                                                                                               <  2:14670/150‑1 (MQ=255)        tGCTCATCCTCCCTCAGGGCTGCCTGTTCTGAACGTAAACTCCTCGCCCAGCCCGTCGTTTGACGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATAttt                                                                                                                                        <  1:23601/150‑1 (MQ=255)              tcctccCTCAGGGCTGCCTGTTCTGAACGTAAACTCCTCGCCCAGCCCGTCGTTTGACGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCAcc                                                                                                                                  <  2:493241/150‑1 (MQ=255)              tcctccCTCAGGGCTGCCTGTTCTGAACGTAAACTCCTCGCCCAGCCCGTCGTTTGACGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCAcc                                                                                                                                  <  2:206042/150‑1 (MQ=255)                         ggCTGCCTGTTCTGAACGTAAACTCCTCGCCCAGCCCGTCGTTTGACGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGt                                                                                                                        >  2:593223/1‑149 (MQ=255)                         ggCTGCCTGTTCTGAACGTAAACTCCTCGCCCAGCCCGTCGTTTGACGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGt                                                                                                                        <  1:593223/149‑1 (MQ=255)                         cgtggacttcaatcgccttggtaaccgccgctttcgttatgacccgcattgtgttgtcccggcgcaccaacatagggtggaaaatatctccgatccagatatctggttgacagatatctggatCGGAGATATTTTCCACCCTATGTTGGt                                                                                                                        <  2:549887‑M2/27‑1 (MQ=255)                           cTGCCTGTTCTGAACGTAAACTCCTCGCCCAGCCCGTCGTTTGACGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTgcg                                                                                                                     >  1:99309/1‑150 (MQ=255)                                tGTTCTGAACGTAAACTCCTCGCCCAGCCCGTCGTTTGACGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTGCGCCggg                                                                                                                >  1:642092/1‑150 (MQ=255)                                      gAACGTAAACTCCTCGCCCAGCCCGTCGTTTGACGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTGCGCCGGGacaaca                                                                                                          >  2:563117/1‑150 (MQ=255)                                        aCGTAAACTCCTCGCCCAGCCCGTCGTTTGACGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTcc                                                                                                                                     <  2:679901/121‑1 (MQ=255)                                        aCGTAAACTCCTCGCCCAGCCCGTCGTTTGACGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTcc                                                                                                                                     >  1:679901/1‑121 (MQ=255)                                            aaaCTCCTCGCCCAGCCCGTCGTTTGACGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTGCGCCGGGACAACACAATGc                                                                                                    >  2:205573/1‑150 (MQ=255)                                              aCTCCTCGCCCAGCCCGTCGTTTGACGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTGCGCCGGGACAACACAATGCgg                                                                                                  <  1:440843/150‑1 (MQ=255)                                                tcctcGCCCAGCCCGTCGTTTGACGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTGCGCCg                                                                                                                  >  2:345587/1‑132 (MQ=255)                                                tcctcGCCCAGCCCGTCGTTTGACGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTGCGCCg                                                                                                                  <  1:345587/132‑1 (MQ=255)                                                  ctcGCCCAGCCCGTCGTTTGACGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTGCGCCGGGACAACACAATGCGGGTCa                                                                                              >  1:771517/1‑150 (MQ=255)                                                  cgccgctttcgttatgacccgcattgtgttgtcccggcgcaccaacatagggtggaaaatatctccgatccagatatctggttgacagatatctggatCGGAGATAtt                                                                                                                                         >  1:623673‑M2/99‑108 (MQ=255)                                                  cgccgctttcgttatgacccgcattgtgttgtcccggcgcaccaacatagggtggaaaatatctccgatccagatatctggttgacagatatctggatCGGAGATAtt                                                                                                                                         <  2:623673‑M2/10‑1 (MQ=255)                                                       ctaGCCCGTCGTTTGACGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTGCGCCGGGACAACACAATGCGGGTCATAACg                                                                                         >  2:596107/3‑150 (MQ=255)                                                       ccAGCCCGTCGTTTGACGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTGCGCCGGGACAACACAATGCGGGCCATAACg                                                                                         >  2:442165/1‑150 (MQ=255)                                                              gtcgtTTGACGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTGCGCCGGGACAACACAATGCGGGTCATAACGAAAgcgg                                                                                  >  1:85216/1‑150 (MQ=255)                                                                 gtTTGACGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTGCGCCGGGACAACACAATGCGGGTCATAACGAAAGcggcgg                                                                               <  1:489572/150‑1 (MQ=255)                                                                      aCGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTGCGCCGGGa                                                                                                               >  2:563076/1‑113 (MQ=255)                                                                      aCGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTGCGCCGGGa                                                                                                               <  1:563076/113‑1 (MQ=255)                                                                           cATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTGCGCCGGGACAACACAATGCg                                                                                                   <  2:210638/120‑1 (MQ=255)                                                                           cATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTGCGCCGGGACAACACAATGCg                                                                                                   >  1:210638/1‑120 (MQ=255)                                                                                  ccATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTGCGCCGGGACAACACAATGCGGGTCATAACGAAAGCGGCGGTTACCAAGGCGATTGaa                                                              <  1:384664/150‑1 (MQ=255)                                                                                         accaacatagggtggaaaatatctccgATCCAGATATCTG‑TCAACCAGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTGCGCCGGGACAACACAATGCGGGTCATAACGAAAGCGGCGGTTACCAAGGCGATTGAAGTCCACg                                                       <  2:549887‑M1/123‑1 (MQ=255)                                                                                                   gTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTGCGCCGGGACAACACAATGCGGGTCATAACGAAAGCGGCGGTTACCAAgg                                                                      <  2:123049/125‑1 (MQ=255)                                                                                                   gTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTGCGCCGGGACAACACAATGCGGGTCATAACGAAAGCGGCGGTTACCAAgg                                                                      >  1:123049/1‑125 (MQ=255)                                                                                                    tCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTGCGCCGGGACAACACAATGCGGGTCATAACGAAAGCGGCGGTTACCAAGGCGATTGAAGTCCACGGCCAGTGGaaa                                            <  2:771517/150‑1 (MQ=255)                                                                                                          aatatctccgATCCAGATATCTGTCAACC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTGCGCCGGGACAACACAATGCGGGTCATAACGAAAgcggcg                                                                                >  1:623673‑M1/11‑108 (MQ=255)                                                                                                          aatatctccgATCCAGATATCTG‑TCAACCAGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTGCGCCGGGACAACACAATGCGGGTCATAACGAAAgcggcg                                                                                <  2:623673‑M1/98‑1 (MQ=255)                                                                                                              tCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTGCGCCGGGACAACACAATGCGGGTCATAACGAAAGCGGCGGTTACCAAGGCGATTGAAGTCCACGGCCAGTGGAAAGCGCCCCTaa                                  <  2:635455/150‑1 (MQ=255)                                                                                                                  gcATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTCGTGCGCCGGGACAATACAATGCGGGTCATAACGAAAGCGGCGGTTACCAAGGCGATTGAAGTCCACGGCCAGTGGAAAGCGCCCCTAAGCCt                              >  1:495731/1‑150 (MQ=255)                                                                                                                   cATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTGCGCCGGGACAACACAATGCGGGTCATAACGAAAGCGGCGGTTACCAAGGCGATTGAAGTCCACGGCCAGTGGAAAGCGCCCCTAAGCCtg                             <  1:596107/150‑1 (MQ=255)                                                                                                                                  ttGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTGCGCCGGGACAACACAATGCGGGTCATAACGAAAGCGGCGGTTACCAAGGCGATTGAAGTCCACGGCCAGTGGAAAGCGCCCCTAAGCCTGTGGCTGACGACCTTc              <  2:14211/150‑1 (MQ=255)                                                                                                                                     accagatatctggatCGGAGATATTTTCCACCCTATGTTGGTGCGCCGGGACAACACAATGCGGGTCATAACGAAAGCGGCGGTTACCAAGGCGATTGAAGTCCACGGCCAGTGGAAAGCGCCCCTAAGCCTGTGGCTGACGACCTTCGa            <  1:549887‑M2/135‑1 (MQ=255)                                                                                                                                        agatatctggatCGGAGATATTTTCCACCCTATGTTGGTGCGCCGGGACAACACAATGCGGGTCATAACGAAAGCGGCGGTTACCAAGGCGATTGAAGTCCACGGCCAGTGGAAAGCGCCCCTAAGCCTGTGGCTGACGACCTTCGACAg         >  2:763699‑M2/13‑150 (MQ=255)                                                                                                                                              ctggatCGGAGATATTTTCCACCCTATGTTGGTGCGCCGGGACAACACAATGCGGGTCATAACGAAAGCGGCGGTTACCAAGGCGATTGAAGTCCACGGCCAGTGGAAAGCGCCCCTAAGCCTGTGGCTGACGACCTTCGACAGGGCGAc   <  1:563117‑M2/144‑1 (MQ=255)                                                                                                                                               tggatCGGAGATATTTTCCACCCTATGTTGGTGCGCCGGGACAACACAATGCGGGTCATAACGAAAGCGGCGGTTACCAAGGCGATTGAAGTCCACGGCCAGTGGAAAGCGCCCCTAAGCCTGTGGCTGACGACCTTCGACAGGGCGACg  >  1:380334‑M2/6‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                 TTGGCCATGCTCATCCTCCCTCAGGGCTGCCTGTTCTGAACGTAAACTCCTCGCCCAGCCCGTCGTTTGACGGGCATCAATCCATTGGCGATCGCCAGGTCACCGTACATCGCGCATCCAGATATCTGGTTGAC‑AGATATCTGGATCGGAGATATTTTCCACCCTATGTTGGTGCGCCGGGACAACACAATGCGGGTCATAACGAAAGCGGCGGTTACCAAGGCGATTGAAGTCCACGGCCAGTGGAAAGCGCCCCTAAGCCTGTGGCTGACGACCTTCGACAGGGCGACG  >  NC_002947/332675‑332965

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.