New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	356613 =	19 (0.640)	6 (0.210)	5/234	NT	23.5%	intergenic (‑407/‑46)	cbcX/tdcG‑I	choline/betaine/carnitine ABC transporter substrate‑binding protein/L‑serine dehydratase
	?	NC_002947	356630 =	21 (0.750)					intergenic (‑424/‑29)	cbcX/tdcG‑I	choline/betaine/carnitine ABC transporter substrate‑binding protein/L‑serine dehydratase

GTGGGCGCAGTTTCTGGTTGAGAACAGCGCGGCGCTGCTGGACAAAAGTACGTCGGTTGCAGACGGCGAGGTGGGCGGTAAAAGCCCGATGATGCTGGCATTCAAGGCGGCCCGCTGTTTGAGCCTAGCAGCTACCCCGCCCTGCGCATGGCGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTGTTCGTTCAGGGCCTGC  >  NC_002947/356472‑356761                                                                                                                                              |                                                                                                                                                     cgcgttcgcgcaggccatgaacgaacagggcgccagcacgcatggggccgacggtgtgggagctggagggcccgacaccgatcttgaacaggtcgaacacgctgatggccattgtcgaatcacctcttgctgggcttgtctCTGCGCATg                                                                                                                                              <  2:746740‑M1/9‑1 (MQ=255)          gcaggccctgaacgaacagggcgccagcacgcatggggccgacggtgtgggagctggagggcccgacaccgatcttgaacaggtcgaacacgctgatggccattgtcgaatcacctcttgctgggcttgtctCTGCGCATGGCGCGCaga                                                                                                                                     >  2:145326‑M1/133‑150 (MQ=255)          gcaggccatgaacgaacagggcgccagcacgcatggggccgacggtgtgggagctggagggcccgacaccgatcttgaacaggtcgaacacgctgatggccattgtcgaatcacctcttgctgggcttgtctCTGCGCATGGCGCGCaga                                                                                                                                     >  1:746740‑M1/133‑150 (MQ=255)          gTTTCTGCTTGAGAACAGCGCGGCGCTGCTGGACAAAAGTACGTCGGTTGCAGACGGCGAGGTGGGCGGTAAAAGCCCGATGATGCTGGCATTCAAGGCGGCCCGCTGTTTGAGCCTAGCAGCTACCCCGCCCTGCGCATGGCGCGCaga                                                                                                                                     <  1:39730/150‑1 (MQ=255)                 gTTGAGAACAGCGCGGCGCTGCTGGACAAAAGTACGTCGGTTGCAGACGGCGAGGTGGGCGGTAAAAGCCCGATGATGCTGGCATTCAAGGCGGCCCGCTGTTTGAGCCTAGCAGCTACCCCGCCCTGCGCATGGCGCGCAGAGACAAGc                                                                                                                              >  2:601136/1‑150 (MQ=255)                                  gctgctGGACAAAAGTACGTCGGTTGCAGACGGCGAGGTGGGCGGTAAAAGCCCGATGATGCGGGCATTCAAGGCGGCCCGCTGTTTGAGCCTAGCAGCTACCCCGCCCTGCGCATGGCGCGCAGAGACAAGCCCAGCAAGAGGTGATTc                                                                                                             <  1:158515/150‑1 (MQ=255)                                       tgGACAAAAGTACGTCGGTTGCAGACGGCGAGGTGGGCGGTAAAAGCCCGATGATGCTGGCATTCAAGGCGGCCCGCTGTTTGAGCCTAGCAGCTACCCCGCCCTGCGCATGGCGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACaa                                                                                                        >  1:143363/1‑150 (MQ=255)                                        ggACAAAATTACTTCGGTTGCAGACGGCGAGGTGGGCGGTAAAAGCCCGATGATGCTGGCATTCAAGGCGGCCCGCTGTTTGAGCCTAGCAGCTACCCCGCCCTGCGCATGGCGCGCAAAGACAAGCCCAGCAAGAGGTGATTCGACAAt                                                                                                       <  2:375100/150‑1 (MQ=255)                                                               aCGGCGAGGTGGGCGGTAAAAGCCCGATGATGCTGGCATTCAAGGCGGCCCGCTGTTTGAGCCTAGCAGCTACCCCGCCCTGCGCATGGCGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGt                                                                                >  1:62406/1‑150 (MQ=255)                                                                cGGCGAGGTGGGCGGTAAAAGCCCGATGATGCTGGCATTCAAGGCGGCCCGCTGTTTGAGCCTAGCAGCTACCCCGCCCTGCGCATGGCGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGtt                                                                               <  1:691501/150‑1 (MQ=255)                                                                        tGGGCGGTAAAAGCCCGATGATGCTGGCATTCAAGGCGGCCCGCTGTTTGAGCCTAGCAGCTACCCCGCCCTGCGCATGGCGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCg                                                                       <  2:736174/150‑1 (MQ=255)                                                                          ggCGGTAAAAGCCCGATGATGCTGGCATTCAAGGCGGCCCGCTGTTTGAGCCTAGCAGCTACCCCGCCCTGCGCATGGCGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGgt                                                                     >  2:256680/1‑150 (MQ=255)                                                                                      gaacaggtcgaacacgctgatggccattgtcgaatcacctcttgctgggcttgtctCTGCGCATGGCGCGCAGAGACAAg                                                                                                                               >  1:565303‑M1/57‑80 (MQ=255)                                                                                      gaacaggtcgaacacgctgatggccattgtcgaatcacctcttgctgggcttgtctCTGCGCATGGCGCGCAGAGACAAg                                                                                                                               <  2:565303‑M1/24‑1 (MQ=255)                                                                                      ccGATGATGCTGGCATTCAAGGCGGCCCGCTGTTTGAGCCTAGCAGCTACCCCGCCCTGCGCATGGCGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACAATg                                                                                                      <  2:724878/105‑1 (MQ=255)                                                                                      ccGATGATGCTGGCATTCAAGGCGGCCCGCTGTTTGAGCCTAGCAGCTACCCCGCCCTGCGCATGGCGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACAATg                                                                                                      >  1:724878/1‑105 (MQ=255)                                                                                           gatgCTGGCATTCAAGGCGGCCCGCTGTTTGAGCCTAGCAGCTACCCCGCCCTGCGCATGGCGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTc                                                    >  2:93771/1‑150 (MQ=255)                                                                                                        aaGGCGGCCCGCTGTTTGAGCCTAGCAGCTACCCCGCCCTGCGCATGGCGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTCCCACACCGTCGGc                                       >  1:225928/1‑150 (MQ=255)                                                                                                                    tGTTTGAGCCTAGCAGCTACCCCGCCCTGCGCATGGCGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTCCCACACCGTCGGCCCCATGCGTGCt                           <  1:256680/150‑1 (MQ=255)                                                                                                                             tcttgctgggcttgtctCTGCGCGCCATGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGAc                                                                                    >  2:598676‑M1/18‑84 (MQ=255)                                                                                                                             tcttgctgggcttgtctCTGCGCGCCATGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGAc                                                                                    <  1:598676‑M1/67‑1 (MQ=255)                                                                                                                                       ccccGCCCTGCGCATGGCGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGgt                                                                     <  2:179274/89‑1 (MQ=255)                                                                                                                                       ccccGCCCTGCGCATGGCGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGgt                                                                     >  1:179274/1‑89 (MQ=255)                                                                                                                                       ccccGCCCTGCGCATGGCGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTGTTCGTTCAgg        <  2:143363/150‑1 (MQ=255)                                                                                                                                       ccccGCCCTGCGCATGGCGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTGTTCGTTCAgg        >  2:580481/1‑150 (MQ=255)                                                                                                                                        cccGCCCTGCGCATGGCGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTGTTCGTTCAggg       >  1:768104/1‑150 (MQ=255)                                                                                                                                          cGCCCTGCGCATGGCGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTgttcgtt            >  2:310576/1‑143 (MQ=255)                                                                                                                                          cGCCCTGCGCATGGCGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTgttcgtt            <  1:310576/143‑1 (MQ=255)                                                                                                                                             ccTGCGCATGGCGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTGTTCGTTCAGGGCCTgc  <  2:225928/150‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                     GTGGGCGCAGTTTCTGGTTGAGAACAGCGCGGCGCTGCTGGACAAAAGTACGTCGGTTGCAGACGGCGAGGTGGGCGGTAAAAGCCCGATGATGCTGGCATTCAAGGCGGCCCGCTGTTTGAGCCTAGCAGCTACCCCGCCCTGCGCATGGCGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTGTTCGTTCAGGGCCTGC  >  NC_002947/356472‑356761

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.