| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 356613 = | 19 (0.640) | 6 (0.210) | 5/234 | NT | 23.5% | intergenic (‑407/‑46) | cbcX/tdcG‑I | choline/betaine/carnitine ABC transporter substrate‑binding protein/L‑serine dehydratase |
| ? | NC_002947 | 356630 = | 21 (0.750) | intergenic (‑424/‑29) | cbcX/tdcG‑I | choline/betaine/carnitine ABC transporter substrate‑binding protein/L‑serine dehydratase | |||||
GTTTCTGGTTGAGAACAGCGCGGCGCTGCTGGACAAAAGTACGTCGGTTGCAGACGGCGAGGTGGGCGGTAAAAGCCCGATGATGCTGGCATTCAAGGCGGCCCGCTGTTTGAGCCTAGCAGCTACCCCGCCCTGCGCATGGCGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTGTTCGTTCAGGGCCTGCGCGAACGCG > NC_002947/356481‑356770 | gcaggccctgaacgaacagggcgccagcacgcatggggccgacggtgtgggagctggagggcccgacaccgatcttgaacaggtcgaacacgctgatggccattgtcgaatcacctcttgctgggcttgtctCTGCGCATGGCGCGCaga > 2:145326‑M1/133‑150 (MQ=255)gcaggccatgaacgaacagggcgccagcacgcatggggccgacggtgtgggagctggagggcccgacaccgatcttgaacaggtcgaacacgctgatggccattgtcgaatcacctcttgctgggcttgtctCTGCGCATGGCGCGCaga > 1:746740‑M1/133‑150 (MQ=255)gTTTCTGCTTGAGAACAGCGCGGCGCTGCTGGACAAAAGTACGTCGGTTGCAGACGGCGAGGTGGGCGGTAAAAGCCCGATGATGCTGGCATTCAAGGCGGCCCGCTGTTTGAGCCTAGCAGCTACCCCGCCCTGCGCATGGCGCGCaga < 1:39730/150‑1 (MQ=255) gTTGAGAACAGCGCGGCGCTGCTGGACAAAAGTACGTCGGTTGCAGACGGCGAGGTGGGCGGTAAAAGCCCGATGATGCTGGCATTCAAGGCGGCCCGCTGTTTGAGCCTAGCAGCTACCCCGCCCTGCGCATGGCGCGCAGAGACAAGc > 2:601136/1‑150 (MQ=255) gctgctGGACAAAAGTACGTCGGTTGCAGACGGCGAGGTGGGCGGTAAAAGCCCGATGATGCGGGCATTCAAGGCGGCCCGCTGTTTGAGCCTAGCAGCTACCCCGCCCTGCGCATGGCGCGCAGAGACAAGCCCAGCAAGAGGTGATTc < 1:158515/150‑1 (MQ=255) tgGACAAAAGTACGTCGGTTGCAGACGGCGAGGTGGGCGGTAAAAGCCCGATGATGCTGGCATTCAAGGCGGCCCGCTGTTTGAGCCTAGCAGCTACCCCGCCCTGCGCATGGCGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACaa > 1:143363/1‑150 (MQ=255) ggACAAAATTACTTCGGTTGCAGACGGCGAGGTGGGCGGTAAAAGCCCGATGATGCTGGCATTCAAGGCGGCCCGCTGTTTGAGCCTAGCAGCTACCCCGCCCTGCGCATGGCGCGCAAAGACAAGCCCAGCAAGAGGTGATTCGACAAt < 2:375100/150‑1 (MQ=255) aCGGCGAGGTGGGCGGTAAAAGCCCGATGATGCTGGCATTCAAGGCGGCCCGCTGTTTGAGCCTAGCAGCTACCCCGCCCTGCGCATGGCGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGt > 1:62406/1‑150 (MQ=255) cGGCGAGGTGGGCGGTAAAAGCCCGATGATGCTGGCATTCAAGGCGGCCCGCTGTTTGAGCCTAGCAGCTACCCCGCCCTGCGCATGGCGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGtt < 1:691501/150‑1 (MQ=255) tGGGCGGTAAAAGCCCGATGATGCTGGCATTCAAGGCGGCCCGCTGTTTGAGCCTAGCAGCTACCCCGCCCTGCGCATGGCGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCg < 2:736174/150‑1 (MQ=255) ggCGGTAAAAGCCCGATGATGCTGGCATTCAAGGCGGCCCGCTGTTTGAGCCTAGCAGCTACCCCGCCCTGCGCATGGCGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGgt > 2:256680/1‑150 (MQ=255) gaacaggtcgaacacgctgatggccattgtcgaatcacctcttgctgggcttgtctCTGCGCATGGCGCGCAGAGACAAg > 1:565303‑M1/57‑80 (MQ=255) gaacaggtcgaacacgctgatggccattgtcgaatcacctcttgctgggcttgtctCTGCGCATGGCGCGCAGAGACAAg < 2:565303‑M1/24‑1 (MQ=255) ccGATGATGCTGGCATTCAAGGCGGCCCGCTGTTTGAGCCTAGCAGCTACCCCGCCCTGCGCATGGCGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACAATg < 2:724878/105‑1 (MQ=255) ccGATGATGCTGGCATTCAAGGCGGCCCGCTGTTTGAGCCTAGCAGCTACCCCGCCCTGCGCATGGCGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACAATg > 1:724878/1‑105 (MQ=255) gatgCTGGCATTCAAGGCGGCCCGCTGTTTGAGCCTAGCAGCTACCCCGCCCTGCGCATGGCGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTc > 2:93771/1‑150 (MQ=255) gtcgaacacgctgatggccattgtcgaatcacctcttgctgggcttgtctctgcgcatggcgcgcagAGACAAGCCCAGCAaga > 2:598676‑M2/68‑84 (MQ=255) gtcgaacacgctgatggccattgtcgaatcacctcttgctgggcttgtctctgcgcatggcgcgcagAGACAAGCCCAGCAaga < 1:598676‑M2/17‑1 (MQ=255) aaGGCGGCCCGCTGTTTGAGCCTAGCAGCTACCCCGCCCTGCGCATGGCGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTCCCACACCGTCGGc > 1:225928/1‑150 (MQ=255) tGTTTGAGCCTAGCAGCTACCCCGCCCTGCGCATGGCGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTCCCACACCGTCGGCCCCATGCGTGCt < 1:256680/150‑1 (MQ=255) tcttgctgggcttgtctCTGCGCGCCATGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGAc > 2:598676‑M1/18‑84 (MQ=255) tcttgctgggcttgtctCTGCGCGCCATGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGAc < 1:598676‑M1/67‑1 (MQ=255) cttgtctctgcgcgccatgcgcagAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTc < 2:565303‑M2/56‑1 (MQ=255) cttgtctctgcgcgccatgcgcagAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTc > 1:565303‑M2/25‑80 (MQ=255) ccccGCCCTGCGCATGGCGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGgt > 1:179274/1‑89 (MQ=255) ccccGCCCTGCGCATGGCGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGgt < 2:179274/89‑1 (MQ=255) ccccGCCCTGCGCATGGCGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTGTTCGTTCAgg > 2:580481/1‑150 (MQ=255) ccccGCCCTGCGCATGGCGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTGTTCGTTCAgg < 2:143363/150‑1 (MQ=255) cccGCCCTGCGCATGGCGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTGTTCGTTCAggg > 1:768104/1‑150 (MQ=255) cGCCCTGCGCATGGCGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTgttcgtt > 2:310576/1‑143 (MQ=255) cGCCCTGCGCATGGCGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTgttcgtt < 1:310576/143‑1 (MQ=255) tctgcgcgccatgcgcagAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTGTTCGTTCATGGCCTgc > 1:746740‑M2/19‑150 (MQ=255) tctgcgcgccatgcgcagAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTGTTCGTTCAGGGCCTgc > 2:145326‑M2/19‑150 (MQ=255) ccTGCGCATGGCGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTGTTCGTTCAGGGCCTgc < 2:225928/150‑1 (MQ=255) ggCGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTGTTCGTTCAGGGCCTGCGCGAAcgcg < 1:601136/150‑1 (MQ=255) catgcgcagAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTGTTCGTTCATGGCCTGCGCGAAcgcg < 2:746740‑M2/141‑1 (MQ=255) | GTTTCTGGTTGAGAACAGCGCGGCGCTGCTGGACAAAAGTACGTCGGTTGCAGACGGCGAGGTGGGCGGTAAAAGCCCGATGATGCTGGCATTCAAGGCGGCCCGCTGTTTGAGCCTAGCAGCTACCCCGCCCTGCGCATGGCGCGCAGAGACAAGCCCAGCAAGAGGTGATTCGACAATGGCCATCAGCGTGTTCGACCTGTTCAAGATCGGTGTCGGGCCCTCCAGCTCCCACACCGTCGGCCCCATGCGTGCTGGCGCCCTGTTCGTTCAGGGCCTGCGCGAACGCG > NC_002947/356481‑356770 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |