New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	380836 =	36 (1.220)	5 (0.210)	5/200	NT	13.3%	intergenic (+23/+86)	gbcB/PP_0317	glycine‑betaine dioxygenase subunit/methyl‑accepting chemotaxis transducer
	?	NC_002947	380916 =	36 (1.500)					intergenic (+103/+6)	gbcB/PP_0317	glycine‑betaine dioxygenase subunit/methyl‑accepting chemotaxis transducer

GGTGCTCAAACTGGGCGGCGAGGTGGAAATGGAGCACAACGGCGGGATTACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGT‑CATCGCTATCTTCAG‑GACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACA  >  NC_002947/380687‑380974                                                                                                                                                      |                                                                                                                                             ggTGCTCAAACTGGGCGGCGAGGTGGAAATGGAGCACAACGGCGGGATTACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGcttctt                                                                                                                                              >  2:736575/1‑150 (MQ=255) ggTGCTCAAACTGGGCGGCGAGGTGGAAATGGAGCACAACGGCGGGATTACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGcttctt                                                                                                                                              >  1:292538/1‑150 (MQ=255)      tCAAACTGGGCGGCGAGGTGGAAATGGAGCACAACGGCGGGATTACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCgg                                                                                                                                         >  1:122101/1‑150 (MQ=255)      tCAAACTGGGCGGCGAGGTGGAAATGGAGCACAACGGCGGGATTACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCgg                                                                                                                                         <  1:712092/150‑1 (MQ=255)           ccgcaacctggtgaacatcaacgacctgtcggtgcagagtgctaccggggcgcatcagaccagcgcggcgagtgccgagctgtcgcgcctggcggtagacctcaatggcctggtagcccggttccgcacctagaagcagTCGCGGGCACg                                                                                                                                    <  1:487617‑M1/11‑1 (MQ=255)                  gcgAGGTGGAAATGGAGCACAACGGCGGGATTACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTc                                                                                                                             <  1:480732/150‑1 (MQ=255)                              tGGAGCACAACGGCGGGATTACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGT‑CAt                                                                                                                >  2:421395/1‑150 (MQ=255)                                                   ccGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACATAACTTTTGTCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGT‑CATCGCTATCTTCAG‑GACTGCGGt                                                                                          >  1:695258/1‑150 (MQ=255)                                                             cgcatcagaccagcgcggcgagtgccgagctgtcgcgcctggcggtagacctcaatggcctggtagcccggttccgcacctagaagcagTCGCGGGCACGCCCGCTCCCACAAGGTTCATCGCTATCTTCAG‑GACTGCGGTGAACCTtgt                                                                                 >  2:612688‑M1/90‑150 (MQ=255)                                                             cGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGT‑CATCGCTATCTTCAG‑GACTGCGGTGAACCTtgtg                                                                                <  2:656737/150‑1 (MQ=255)                                                                aGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGT‑CATCGCTATCTTCAG‑GACTGCGGTGAACCTTGTGGGa                                                                             <  1:132244/150‑1 (MQ=255)                                                                  ccGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGT‑CATCGCTATCTTCAG‑GACTGCGGTGAACCTTGTGGGAGc                                                                           >  1:64419/1‑150 (MQ=255)                                                                            cATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGT‑CATCGCTATCTTCAG‑GACTGCGGTGAACCTTGTGGGAGCGGGCGTGccc                                                                 <  2:122101/150‑1 (MQ=255)                                                                                cTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGT‑CATCGCTATCTTCAG‑GACTGCGGTGAACCTTGTGGGAGCTGGCGTGCCCGCGa                                                             <  2:414272/150‑1 (MQ=255)                                                                                  ggcGTGCTGCAGCGTGCCGAGAGGGGAGGTGCGGCACGATTACTGATCCAGTGGCCAGGCTGGCTTCTACGCGGGCACGCCCGCTCCCACAGAGT‑CATCGCTATCTTCAG‑GACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACt                                                           <  2:186752/148‑1 (MQ=38)                                                                                        ctgcAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGTT‑CATCGCTATCTTCAG‑GACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCt                                                     <  2:292538/150‑1 (MQ=255)                                                                                              cGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTACCACAGGGT‑CATCGCTATCTTCAG‑GACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGc                                               <  1:15411/150‑1 (MQ=255)                                                                                               gcgcctggcggtagacctcaatggcctggtagcccggttccgcacctagaagcagTCGCGGGCACGCCCGCTCCCACAGGGT‑CATCGCTATCTTCAG‑GACTGCGGTGAACCTtgtg                                                                                >  2:329718‑M1/56‑116 (MQ=255)                                                                                               gcgcctggcggtagacctcaatggcctggtagcccggttccgcacctagaagcagTCGCGGGCACGCCCGCTCCCACAGGGT‑CATCGCTATCTTCAG‑GACTGCGGTGAACCTtgtg                                                                                <  1:329718‑M1/61‑1 (MQ=255)                                                                                                tGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGT‑CGTCGCTATCTTCAG‑GACGGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCgg                                             >  2:590191/1‑150 (MQ=255)                                                                                                      aaGGGGATGTGCGGATCGATTACTGAGCCAGTGGCCAGGCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGT‑CATCGCTATCTTCAG‑GACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCgg                                       <  2:133346/150‑1 (MQ=255)                                                                                                         gtagacctcaatggcctggtagcccggttccgcacctagaagcagTCGCGGGCACGccc                                                                                                                                 <  1:643417‑M1/14‑1 (MQ=255)                                                                                                         gtagacctcaatggcctggtagcccggttccgcacctagaagcagTCGCGGGCACGccc                                                                                                                                 >  2:643417‑M1/46‑59 (MQ=255)                                                                                                         gggATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCt                                                                                                                              <  1:597171/62‑1 (MQ=255)                                                                                                         gggATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCt                                                                                                                              >  2:597171/1‑62 (MQ=255)                                                                                                          ggATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCa                                                                                                                                      >  1:54558/1‑53 (MQ=255)                                                                                                          ggATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCa                                                                                                                                      <  2:54558/53‑1 (MQ=255)                                                                                                              gtgCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGT‑CATCGCTATCTTCAG‑GACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAg                               <  1:421395/150‑1 (MQ=255)                                                                                                               ctcaatggcctggtagcccggttccgcacctagaagcagTCGCGGGCACGCCCGCTCCCACAGGGT‑CATCGCTATCTTCAG‑GACTGCGGTGAAcc                                                                                     >  2:32410‑M1/40‑95 (MQ=255)                                                                                                               ctcaatggcctggtagcccggttccgcacctagaagcagTCGCGGGCACGCCCGCTCCCACAGGGT‑CATCGCTATCTTCAG‑GACTGCGGTGAAcc                                                                                     <  1:32410‑M1/56‑1 (MQ=255)                                                                                                                  ggATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGT‑CATCGCTATCTTCAG‑GACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCa                           >  1:1367/1‑150 (MQ=255)                                                                                                                       gATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGT‑CATCGCTATCTTCAG‑GACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAg                      >  2:773731/1‑150 (MQ=255)                                                                                                                       gATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGT‑CATCGCTATCTTCAG‑GACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAg                      <  2:1367/150‑1 (MQ=255)                                                                                                                       gATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGT‑CATCGCTATCTTCAG‑GACTGAGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAg                      >  1:535396/1‑150 (MQ=255)                                                                                                                        aTTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGT‑CATCGCTATCTTCAG‑GACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAg                                                   >  1:532157/1‑120 (MQ=255)                                                                                                                        aTTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGT‑CATCGCTATCTTCAG‑GACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAg                                                   <  2:532157/120‑1 (MQ=255)                                                                                                                          tACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGT‑CATCGCTATCTTCAG‑GACTGCGGTGAACCTTGTGGGATCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAgggc                   >  2:384690/1‑148 (MQ=255)                                                                                                                             tGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGT‑CATCGCTATCTTCAG‑GACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTAc                >  2:487617/1‑150 (MQ=255)                                                                                                                             tGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGCT‑CATCGCTATCTTCCG‑GACTGCCGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTAc                >  1:162382/1‑150 (MQ=255)                                                                                                                              gATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGT‑CATCGCTATATTCCTTGAC‑CTTGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTAcc               <  1:736575/150‑1 (MQ=255)                                                                                                                               aTCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGT‑CATCGCTATCTTCAG‑GACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCg              >  2:683557/1‑150 (MQ=255)                                                                                                                                tCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGT‑CATCGCTATCTTCAG‑GACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGc             >  1:779735/1‑150 (MQ=255)                                                                                                                                 ccAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGT‑CATCGCTATCTTCAG‑GACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTCCCGcc            >  2:144100/1‑150 (MQ=255)                                                                                                                                   aGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGT‑CATCGCTATCTTCAG‑GACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAg          <  1:683557/150‑1 (MQ=255)                                                                                                                                   aGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGT‑CATCGCTATCTTCAG‑GACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAg          >  2:181016/1‑150 (MQ=255)                                                                                                                                           gTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGT‑CATCGCTATCTTCAG‑GACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACa  >  1:673909/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                             GGTGCTCAAACTGGGCGGCGAGGTGGAAATGGAGCACAACGGCGGGATTACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGT‑CATCGCTATCTTCAG‑GACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACA  >  NC_002947/380687‑380974

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.