New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	390237 =	31 (1.050)	3 (0.110)	3/232	NT	9.8%	coding (508/3015 nt)	soxA	sarcosine oxidase subunit alpha
	?	NC_002947	390307 =	26 (0.930)					coding (578/3015 nt)	soxA	sarcosine oxidase subunit alpha

AGCATGATGCCGCCGGGCTTCTACTACAAAACCTTCATGTACCCCAAATCGTTCTGGATGACTTACGAGAAGTACATCCGTAAAGCCG‑‑CCGGCCTGGGCCGTGCGCCGCTGCAGAACGATCCTGACAGCTACGACTACATGAACCGGCACTGCGACGTGCTGATCGTCGGCGCCGGCCCTGCTGGCCTGGCTGCCGCACTGGCCGCTGCGCGCAGTGGTGCCCGCGTGATCCTGGCTGACGAGCAGGAAGAGTTCGGCGGCAGCCTGCTCGACACCCGCGAAACCCTCGACGGC  >  NC_002947/390090‑390383                                                                                                                                                      |                                                                                                                                                   agcaTGATGCCGCCGGGCTTCTACTACAAAACCTTCATGTACCCCAAATCGTTCTGGATGACTTACGAGAAGTACATCCGTAAAGCCG‑‑CCGGCCTGGGCCGTGCGCCGCTGCAGAACGATCCTGACAGCTACGACTACATGAACCGGCAc                                                                                                                                                  >  1:305879/1‑150 (MQ=255)   caTGATGCCGCCGGGCTTCTACTACAAAACCTTCATGTACCCCAAATCGTTCTGGATGACTTACGAGAAGTACATCCGTAAAGCCG‑‑CCGGCCTGGGCCGTGCGCCGCTGCAGAACGATCCTGACAGCTACGACTACATGAACCGGCACTg                                                                                                                                                <  1:527167/150‑1 (MQ=255)       cagggtcacttccggcaggccttccagctctttgaccacggcgttgacccagtcggcagcaggcttgccgtcgagggtttcgcgggtgtcgagcaggctgccgccgaactcttcctgctcgtcagccaggatcacgcgggcacCACTGCg                                                                                                                                              <  2:211094‑M1/7‑1 (MQ=255)                      tactacAAAACCTTCATGTACCCCAAATCGTTCTGGATGACTTACGAGAAGTACATCCGTAAAGCCG‑‑CCGGCCTGGGCCGTGCGCCGCTGCAGAACGATCCTGACAGCTACGACTACATGAACCGGCACTGCGa                                                                                                                                             <  2:534573/134‑1 (MQ=255)                      tactacAAAACCTTCATGTACCCCAAATCGTTCTGGATGACTTACGAGAAGTACATCCGTAAAGCCG‑‑CCGGCCTGGGCCGTGCGCCGCTGCAGAACGATCCTGACAGCTACGACTACATGAACCGGCACTGCGa                                                                                                                                             >  1:534573/1‑134 (MQ=255)                             aaaCCTTCATGTACCCCAAATCGTTCTGGATGACTTACGAGAAGTACATCCGTAAAGCCG‑‑CCGGCCTGGGCCGTGCGCCGCTGCAGAACGATCCTGACAGCTACGACTACATGAACCGGCACTGCGACGTg                                                                                                                                         <  2:193803/131‑1 (MQ=255)                             aaaCCTTCATGTACCCCAAATCGTTCTGGATGACTTACGAGAAGTACATCCGTAAAGCCG‑‑CCGGCCTGGGCCGTGCGCCGCTGCAGAACGATCCTGACAGCTACGACTACATGAACCGGCACTGCGACGTg                                                                                                                                         >  1:193803/1‑131 (MQ=255)                                     aTGTACCCCAAATCGTTCTGGATGACTTACGGGAAGTACATCCGTAAAGCCG‑‑CCGGCCTGGGCCGTGCGCCGCTGCAGAACGATCCTGACAGCTACGACTACATGAACCGGCACTGCGACGTGCTGATCGTCGGCGCCGGCCCTGctggc                                                                                                              >  1:627876/1‑150 (MQ=255)                                             cAAATCGTTCTGGATGACTTACGAGAAG‑ACACTCGCTCTTCCGATCTGGGCT‑GGCCGGGCGCCGCTGCAGAACGTGCCTGACAGCTACGACTACATGAACCGGCACTGCGACGTGCTGATCGTCGGCGCCGGCCCTGCTGGCCTGGCTGc                                                                                                      <  1:575200/150‑1 (MQ=255)                                                    ttCTGGATGACTTACGAGAAGTACATCCGTAAAGCCG‑‑CCGGCCTGGGCCGTGCGCCGCTGCAGAACGATCCTGACAGCTACGACTACATGAACCGGCACTGCGACGTGCTGATCGTCGGCGCCGGCCctgc                                                                                                                  >  1:173654/1‑131 (MQ=255)                                                    ttCTGGATGACTTACGAGAAGTACATCCGTAAAGCCG‑‑CCGGCCTGGGCCGTGCGCCGCTGCAGAACGATCCTGACAGCTACGACTACATGAACCGGCACTGCGACGTGCTGATCGTCGGCGCCGGCCctgc                                                                                                                  <  2:173654/131‑1 (MQ=255)                                                          gtcggcagcaggcttgccgtcgagggtttcgcgggtgtcgagcaggctgccgccgaactcttcctgctcgtcagccaggatcacgcgggcacCACTGCGACGTGCTGATCGTCGGCGCCGGCCCTGCTGGCCTGGCTGCCGCACTGGCCg                                                                                           <  2:184655‑M1/58‑1 (MQ=255)                                                                   gagaAGTACATCCGTAAAGCCG‑‑CCGGCCTGGGCCGTGCGCCGCTGCAGAACGATCCTGACAGCTACGACTACATGAACCGGCACTGCGACGTGCTGAtc                                                                                                                                   >  1:599372/1‑99 (MQ=255)                                                                   gagaAGTACATCCGTAAAGCCG‑‑CCGGCCTGGGCCGTGCGCCGCTGCAGAACGATCCTGACAGCTACGACTACATGAACCGGCACTGCGACGTGCTGAtc                                                                                                                                   <  2:599372/99‑1 (MQ=255)                                                                    ggcttgccgtcgagggtttcgcgggtgtcgagcaggctgccgccgaactcttcctgctcgtcagccaggatcacgcgggcacCACTGCGACGTGCTGATCGTCGGCGCCGGCCCTGCTGGCCTGGCTGCCGCACTGGCCGCTGCGCGCAg                                                                                 >  1:184655‑M1/83‑150 (MQ=255)                                                                    agaAGTACATCCGTAAAGCCG‑‑CCGGCCTGGGCCGTGCGCCGCTGCAGAACGATCCTGACAGCTACGACTACATGAACCGGCACTGCGACGTGCTGATCGTCGGCGCCGGCCCTGCTGGCCTGGCTGCCGCACTGGCCGCTGCGCGCAgtg                                                                               <  1:99430/150‑1 (MQ=255)                                                                        gTACATCCGTAAAGCCG‑‑CCGGCCTGGGCCGTGCGCCGCTGCAGAACGATCCTGACAGCTACGACTACATGAACCGGCACTGCGACGTGCTGATCGTCGGCGCCGGCCCTGCTGGCCTGGCTGCCGCACTGGCCGCTGCGCGCAGTGGTGc                                                                           >  1:299056/1‑150 (MQ=255)                                                                         tACATCCGTAAAGCCG‑‑CCGGCCTGGGCCGTGCGCCGCTGCAGAACGATCCTGACAGCTACGACTACATGAACCGGCACTGCGACGTGCTGATCGTCGGCGCCGGCCCTGctgg                                                                                                               <  2:708344/113‑1 (MQ=255)                                                                         tACATCCGTAAAGCCG‑‑CCGGCCTGGGCCGTGCGCCGCTGCAGAACGATCCTGACAGCTACGACTACATGAACCGGCACTGCGACGTGCTGATCGTCGGCGCCGGCCCTGctgg                                                                                                               >  1:708344/1‑113 (MQ=255)                                                                            aTCCGTAAAGCCG‑‑CCGGCCTGGGCCGTGCGCCGCTGCAAAACGATCCTGACAGCTACGACTACATGAACCGGCACTGCGACGTga                                                                                                                                        >  2:606948/1‑84 (MQ=255)                                                                            aTCCGTAAAGCCG‑‑CCGGCCTGGGCCGTGCGCCGCTGCAAAACGATCCTGACAGCTACGACTACATGAACCGGCACTGCGACGTGc                                                                                                                                        <  1:606948/85‑1 (MQ=255)                                                                              ccGTAAAGCCG‑‑CCGGCCTGGGCCGTGCGCCGCTGCAGAACGATCCTGACAGCTACGACTACATGAACCGGCACTGCGACGTGCTGATCGTCGGCGCCGGCCCTGCTGGCCTGGCTGCCGCACTGGCCGCTGCGCGCAGTGGTGCCCGCGt                                                                     <  2:299056/150‑1 (MQ=255)                                                                                gTAAAGCCG‑‑CCGGCCTGGGCCGTGCGCCGCTGCAGAACGATCCTGACAGCTACGACTACATGAACCGGCACTGCGACGTGCTGATCGTCGGCGCCGGCCCTGCTGGCCTGGCTGCCGCACTGGCCGCTGCGCGCAGTGGTGCCCGCGTGa                                                                   >  1:211094/1‑150 (MQ=255)                                                                                 tAAAGCCG‑‑CCGGCCTGGGCCGTGCGCCGCTGCAGAACGATCCTGACAGCTACGACTACATGAACCGGCACTGCGACGTGCTGATCGTCGGCGCCGGCCCTGCTGGCCTGGCTGCCGCACTGGCCGCTGCGCGCAGTGGTGCCCGCGTGAt                                                                  >  1:239681/1‑150 (MQ=255)                                                                                     ttcgcgggtgtcgagcaggctgccgccgaactcttcctgctcgtcagccaggatcacgcgggcacCACTGCGACGTGCTGATCGTCGGCGCCGGCCCTGCTGGCCTGGCTGCCGCACTGGCCGCTGCGCGCAGTGGTGCCCGCGTGATcc                                                                >  1:115505‑M1/66‑150 (MQ=255)                                                                                                           gcggcTGCAGAACGATCCTGACAGCTACGACTACATGAACCGGCACTGCGACGTGCTGATCGTCGGCGCCGGCCCTGCTGGCCTGGCTGCCGCACTGGCCGCTGCGCGCAGTGGTGCCCGCGTGATCCTGGCTGACGa                                                      >  1:797673/4‑138 (MQ=255)                                                                                                           gccgcTGCAGAACGATCCTGACAGCTACGACTACATGAACCGGCACTGCGACGTGCTGATCGTCGGCGCCGGCCCTGCTGGCCTGGCTGCCGCACTGGCCGCTGCGCGCAGTGGTGCCCGCGTGATCCTGGCTGACGa                                                      <  2:797673/138‑1 (MQ=255)                                                                                                              gcTGCAGAACGATCCTGACAGCTACGACTACATGAACCGGCACTGCGACGTGCTGATCGTCGGCGCCGGCCCTGCTGGCCTGGCTGCCGCACTGGCCGCTGCGCGCAGTGGTGCCCGCGTGATCCTGGCTGACGAGCAGGAAGAGTTcgg                                       >  2:342017/1‑150 (MQ=255)                                                                                                                  cAGAACGATCCTGACAGCTACGACTACATGAACCGGCACTGc                                                                                                                                               >  2:445734/1‑42 (MQ=255)                                                                                                                  cAGAACGATCCTGACAGCTACGACTACATGAACCGGCACTGc                                                                                                                                               <  1:445734/42‑1 (MQ=255)                                                                                                                           ccTGACAGCTACGACTACATGAACCGGCACTGCGACGTGCTGATCGTCGGCGCCGGCCCTGCTGGCCTGGCTGCCGCACTGGCCGCTGCGCGCAGTGGTGCCCGCGTGATCCTGGCTGACGAGCAGGAAGAGTTCGGCGGCAGCCTGCTc                          <  1:470807/150‑1 (MQ=255)                                                                                                                              gACAGCTACGACTACATGAACCGGCACTGCGACGTGCTGATCGTCGGCGCCGGCCCTGCTGGCCTGGCTGCCGCACTGGCCGCTGCGCGCAGTGGTGCCCGCGTGATCCTGGCTGACGAGCAg                                                  <  1:185809/123‑1 (MQ=255)                                                                                                                              gACAGCTACGACTACATGAACCGGCACTGCGACGTGCTGATCGTCGGCGCCGGCCCTGCTGGCCTGGCTGCCGCACTGGCCGCTGCGCGCAGTGGTGCCCGCGTGATCCTGGCTGACGAGCAg                                                  >  2:185809/1‑123 (MQ=255)                                                                                                                                          tACATGAACCGGCACTGCGACGTGCTGATCGTCGGCGCCGGCCCTGCTGGCCTGGCTGCCGCACTGGCCGCTGCGCGCAGTGGTGCCCGCGTGATCCTGGCTGACGAGCAGGAAGAGTTCGGCGGCAGCCTGCTCGACACCCGCGAAAcc           >  1:320621/1‑150 (MQ=255)                                                                                                                                             aTGAACCGGCACTGCGACGTGCTGATCGTCGGCGCCGGCCCTGCTGGCCTGGCTGCCGCACTGGCCGCTGCGCGCAGTGGTGCCCGCGTGATCCTGGCTGACGAGCAGGAAGAGTTCGGCGGCAGCCTGCTc                          <  1:795208/132‑1 (MQ=255)                                                                                                                                             aTGAACCGGCACTGCGACGTGCTGATCGTCGGCGCCGGCCCTGCTGGCCTGGCTGCCGCACTGGCCGCTGCGCGCAGTGGTGCCCGCGTGATCCTGGCTGACGAGCAGGAAGAGTTCGGCGGCAGCCTGCTc                          >  2:795208/1‑132 (MQ=255)                                                                                                                                               gAACCGGCACTGCGACGTGCTGATCGTCGGCGCCGGCCCTGCTGGCCTGGCTGCCGCACTGGCCGCTGCGCGCAGTGGTGCCCGCGTGATCCTGGCTGACGAGCAGGAAGAGTTCGGCGGCAGCCTGCTCGACACCCGCGAAACCCTCGa      >  1:208062/1‑150 (MQ=255)                                                                                                                                                   cGGCACTGCGACGTGCTGATCGTCGGCGCCGGCCCTGCTGGCCTGGCTGCCGCACTGGCCGCTGCGCGCAGTGGTGCCCGCGTGATCCTGGCTGACGAGCAGGAAGAGTTCGGCGGCAGCCTGCTCGACACCCGCGAAACCCTCGACGGc  >  1:274641/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                   AGCATGATGCCGCCGGGCTTCTACTACAAAACCTTCATGTACCCCAAATCGTTCTGGATGACTTACGAGAAGTACATCCGTAAAGCCG‑‑CCGGCCTGGGCCGTGCGCCGCTGCAGAACGATCCTGACAGCTACGACTACATGAACCGGCACTGCGACGTGCTGATCGTCGGCGCCGGCCCTGCTGGCCTGGCTGCCGCACTGGCCGCTGCGCGCAGTGGTGCCCGCGTGATCCTGGCTGACGAGCAGGAAGAGTTCGGCGGCAGCCTGCTCGACACCCGCGAAACCCTCGACGGC  >  NC_002947/390090‑390383

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.