New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	390237 =	31 (1.050)	3 (0.110)	3/232	NT	9.8%	coding (508/3015 nt)	soxA	sarcosine oxidase subunit alpha
	?	NC_002947	390307 =	26 (0.930)					coding (578/3015 nt)	soxA	sarcosine oxidase subunit alpha

GTACATCCGTAAAGCCGCCGGCCTGGGCCGTGCGCCGCTGCAGAACGATCCTGACAGCTACGACTACATGAACCGGCACTGCGACGTGCTGATCGTCGGCGCCGGCCCTGCTGGCCTGGCTGCCGCACTGGCCGCTGCGCGCAGTGGTGCCCGCGTGATCCTGGCTGACGAGCAGGAAGAGTTCGGCGGCAGCCTGCTCGACACCCGCGAAACCCTCGACGGCAAGCCTGCTGCCGACTGGGTCAACGCCGTGGTCAAAGAGCTGGAAGGCCTGCCGGAAGTGACCCTG  >  NC_002947/390161‑390449                                                                                                                                                   |                                                                                                                                               gTACATCCGTAAAGCCGCCGGCCTGGGCCGTGCGCCGCTGCAGAACGATCCTGACAGCTACGACTACATGAACCGGCACTGCGACGTGCTGATCGTCGGCGCCGGCCCTGCTGGCCTGGCTGCCGCACTGGCCGCTGCGCGCAGTGGTGc                                                                                                                                             >  1:299056/1‑150 (MQ=255)       ccGTAAAGCCGCCGGCCTGGGCCGTGCGCCGCTGCAGAACGATCCTGACAGCTACGACTACATGAACCGGCACTGCGACGTGCTGATCGTCGGCGCCGGCCCTGCTGGCCTGGCTGCCGCACTGGCCGCTGCGCGCAGTGGTGCCCGCGt                                                                                                                                       <  2:299056/150‑1 (MQ=255)         gTAAAGCCGCCGGCCTGGGCCGTGCGCCGCTGCAGAACGATCCTGACAGCTACGACTACATGAACCGGCACTGCGACGTGCTGATCGTCGGCGCCGGCCCTGCTGGCCTGGCTGCCGCACTGGCCGCTGCGCGCAGTGGTGCCCGCGTGa                                                                                                                                     >  1:211094/1‑150 (MQ=255)          tAAAGCCGCCGGCCTGGGCCGTGCGCCGCTGCAGAACGATCCTGACAGCTACGACTACATGAACCGGCACTGCGACGTGCTGATCGTCGGCGCCGGCCCTGCTGGCCTGGCTGCCGCACTGGCCGCTGCGCGCAGTGGTGCCCGCGTGAt                                                                                                                                    >  1:239681/1‑150 (MQ=255)            ttcgcgggtgtcgagcaggctgccgccgaactcttcctgctcgtcagccaggatcacgcgggcacCACTGCGACGTGCTGATCGTCGGCGCCGGCCCTGCTGGCCTGGCTGCCGCACTGGCCGCTGCGCGCAGTGGTGCCCGCGTGATcc                                                                                                                                  >  1:115505‑M1/66‑150 (MQ=255)                                  gcggcTGCAGAACGATCCTGACAGCTACGACTACATGAACCGGCACTGCGACGTGCTGATCGTCGGCGCCGGCCCTGCTGGCCTGGCTGCCGCACTGGCCGCTGCGCGCAGTGGTGCCCGCGTGATCCTGGCTGACGa                                                                                                                        >  1:797673/4‑138 (MQ=255)                                  gccgcTGCAGAACGATCCTGACAGCTACGACTACATGAACCGGCACTGCGACGTGCTGATCGTCGGCGCCGGCCCTGCTGGCCTGGCTGCCGCACTGGCCGCTGCGCGCAGTGGTGCCCGCGTGATCCTGGCTGACGa                                                                                                                        <  2:797673/138‑1 (MQ=255)                                     gcTGCAGAACGATCCTGACAGCTACGACTACATGAACCGGCACTGCGACGTGCTGATCGTCGGCGCCGGCCCTGCTGGCCTGGCTGCCGCACTGGCCGCTGCGCGCAGTGGTGCCCGCGTGATCCTGGCTGACGAGCAGGAAGAGTTcgg                                                                                                         >  2:342017/1‑150 (MQ=255)                                                  ccTGACAGCTACGACTACATGAACCGGCACTGCGACGTGCTGATCGTCGGCGCCGGCCCTGCTGGCCTGGCTGCCGCACTGGCCGCTGCGCGCAGTGGTGCCCGCGTGATCCTGGCTGACGAGCAGGAAGAGTTCGGCGGCAGCCTGCTc                                                                                            <  1:470807/150‑1 (MQ=255)                                                     gACAGCTACGACTACATGAACCGGCACTGCGACGTGCTGATCGTCGGCGCCGGCCCTGCTGGCCTGGCTGCCGCACTGGCCGCTGCGCGCAGTGGTGCCCGCGTGATCCTGGCTGACGAGCAg                                                                                                                    <  1:185809/123‑1 (MQ=255)                                                     gACAGCTACGACTACATGAACCGGCACTGCGACGTGCTGATCGTCGGCGCCGGCCCTGCTGGCCTGGCTGCCGCACTGGCCGCTGCGCGCAGTGGTGCCCGCGTGATCCTGGCTGACGAGCAg                                                                                                                    >  2:185809/1‑123 (MQ=255)                                                              ggatcacgcgggcaccactgcgcgcagcggccagtgcggcagccaggccagcagggccggcgccgacgatcagcacgtcgcagtgGTGCCCGCGTGATCCTGGCTGACGAGCAGGAAGAGTTCGGCGGCAGCCTGCTCGACACCCGCGaa                                                                                >  1:115505‑M2/86‑150 (MQ=255)                                                                 tACATGAACCGGCACTGCGACGTGCTGATCGTCGGCGCCGGCCCTGCTGGCCTGGCTGCCGCACTGGCCGCTGCGCGCAGTGGTGCCCGCGTGATCCTGGCTGACGAGCAGGAAGAGTTCGGCGGCAGCCTGCTCGACACCCGCGAAAcc                                                                             >  1:320621/1‑150 (MQ=255)                                                                    aTGAACCGGCACTGCGACGTGCTGATCGTCGGCGCCGGCCCTGCTGGCCTGGCTGCCGCACTGGCCGCTGCGCGCAGTGGTGCCCGCGTGATCCTGGCTGACGAGCAGGAAGAGTTCGGCGGCAGCCTGCTc                                                                                            >  2:795208/1‑132 (MQ=255)                                                                    aTGAACCGGCACTGCGACGTGCTGATCGTCGGCGCCGGCCCTGCTGGCCTGGCTGCCGCACTGGCCGCTGCGCGCAGTGGTGCCCGCGTGATCCTGGCTGACGAGCAGGAAGAGTTCGGCGGCAGCCTGCTc                                                                                            <  1:795208/132‑1 (MQ=255)                                                                      gAACCGGCACTGCGACGTGCTGATCGTCGGCGCCGGCCCTGCTGGCCTGGCTGCCGCACTGGCCGCTGCGCGCAGTGGTGCCCGCGTGATCCTGGCTGACGAGCAGGAAGAGTTCGGCGGCAGCCTGCTCGACACCCGCGAAACCCTCGa                                                                        >  1:208062/1‑150 (MQ=255)                                                                          cGGCACTGCGACGTGCTGATCGTCGGCGCCGGCCCTGCTGGCCTGGCTGCCGCACTGGCCGCTGCGCGCAGTGGTGCCCGCGTGATCCTGGCTGACGAGCAGGAAGAGTTCGGCGGCAGCCTGCTCGACACCCGCGAAACCCTCGACGGc                                                                    >  1:274641/1‑150 (MQ=255)                                                                               ctgcgcgcagcggccagtgcggcagccaggccagcagggccggcgccgacgatcagcacgtcgcagtgGTGCCCGCGTGATCCTGGCTGACGAGCAGGAAGAGTTCGGCGGCAGCCTGCTCGACACCCGCGAAACCCTCGACGGCAAGcc                                                               >  1:184655‑M2/69‑150 (MQ=255)                                                                                   GACGTGCTGATCGTCGGCGCCGGCCCTGCTGGCCTGGCTGCCGCACTGGCCGCTGCGCGCAGTGGTGCCCGCGTGATCCTGGCTGACGAGCAGGAAGAGTTCGGCGGCAGCCTGCTCGACACCCGCGAAACCCTCGACGGCAAGCctgct                                                           >  2:239681‑M1/1‑150 (MQ=255)                                                                                     cGTGCTGATCGTCGGCGCCGGCCCTGCTGGCCTGGCTGCCGCACTGGCCGCTGCGCGCAGTGGTGCCCGCGTGATCCTGGCTGACGAGCAGGAAGAGTTCGGCGGCAGCCTGCTCGACACCCGCGAAACCCTCGACGGCAAGCCtgctgc                                                         <  2:305879/150‑1 (MQ=255)                                                                                         cggccagtgcggcagccaggccagcagggccggcgccgacgatcagcacgtcgcagtgGTGCCCGCGTGATCCTGGCTGACGAGCAGGAAGAGTTCGGCGGCAGCCTGCTCGACACCCGCGAAACCCTCGACGGCAAGCCTGCTGCCGAc                                                     <  2:184655‑M2/92‑1 (MQ=255)                                                                                                tcgGCGCCGGCCCTGCTGGCCTGGCTGCCGCACTGGCCGCTGCGCGCAGTGGTGCCCGCGTGATCCTGGCTGACGAGCAGGAAGAGTTCGGCGGCa                                                                                                    <  2:262324/96‑1 (MQ=255)                                                                                                tcgGCGCCGGCCCTGCTGGCCTGGCTGCCGCACTGGCCGCTGCGCGCAGTGGTGCCCGCGTGATCCTGGCTGACGAGCAGGAAGAGTTCGGCGGCa                                                                                                    >  1:262324/1‑96 (MQ=255)                                                                                                 cgGCGCCGGCCCTGCTGGCCTGGCTGCCGCACTGGCCGCTGCGCGCAGTGGTGCCCGCGTGATCCTGGCTGACGAGCAGGAAGAGTTCGGCGGCAGCCTGCTCGACACCCGCGAAACCCTCGACGGCAAGCCTGCTGCCGACTGGGTCaa                                             <  2:362490/150‑1 (MQ=255)                                                                                                   gcgcCGGCCCTGCTGGCCTGGCTGCCGCACTAGCCGCTGCGCGCAGTGGTGCCCGCGTGATCCTGGCTGACGAGCAGGAAGAGTTCGGCGGCAGCCTGCTCGACACCCGCGAAACCCTCGACGGCAAGCCTGCTGCCGACTGGGTCAACg                                           >  1:283295/1‑150 (MQ=255)                                                                                                           ccTGCTGGCCTGGCTGCCGCACTGGCCGCTGCGCGCAGTGGTGCCCGCGTGATCCTGGCTGACGAGCAGGAAGAGTTCGGCGGCAGCCTGCTCGACACCCGCGAAACCCTCGACGGCAAGCCTGCTGCCGACTGGGTCAACGCCGTGGTc                                   >  1:206926/1‑150 (MQ=255)                                                                                                             tgctgGCCTGGCTGCCGCACTGGCCGCTGCGCGCAGTGGTGCCCGCGTGATCCTGGCTGACGAGCAGGAAGAGTTCGGCGGCAGCCTGCTCGACACCCGCGAAACCCTCGACGGCAAGCCTGCTGCCGACTGGGTCAACGCCGTGGTCaa                                 >  2:283371/1‑150 (MQ=255)                                                                                                             tgctgGCCTGGCTGCCGCACTGGCCGCTGCGCGCAGTGGTGCCCGCGTGATCCTGGCTGACGAGCAGGAAGAGTTCGGCGGCAGCCTGCTCGACACCCGCGAAACCCTCGACGGCAAGCCTGCTGCCGACTGGGTCAACGCCGTGGTCaa                                 >  2:734437/1‑150 (MQ=255)                                                                                                                tggcctggcTGCCGCACTGGCCGCTGCGCGCAGTGGTGCCCGCGTGATCCTGGCTGACGAGCAGGAAGAGTTCGGCGGCAGCCTGCTCGACACCCGCGAAACCCTCGACGGCAAGCCTGCTGCCGACTAGGCCAAAGCCGTGGTCAAaga                              <  2:274641/150‑1 (MQ=255)                                                                                                                         tGCCGCACTGGCCGCTGCGCGCAGTGGTGCCCGCGTGATCCTGGCTGACGAGCAGGAAGAGTTCGGCGGCAGCCTGCTCGACACCCGCGAAAACCTCGACGGCAAGCCTGCTGCCGACTGGGTCAACGCCGTGGTCAAAGAGCTGGAAgg                     >  2:13749/1‑150 (MQ=255)                                                                                                                          gCCGCACTGGCCGCTGCGCGCAGTGGTGCCCGCGTGATCCTGGCTGACGAGCAGGAAGAGTTCGGCGGCAGCCTGCTCGACACCCGCGAAACCCTCGACGGCAAGCCTGCTGCCGACTGGGTCAACGCCGTGGTCAAAGAGCTGGAAGGc                    <  1:342017/150‑1 (MQ=255)                                                                                                                               aCTGGCCGCTGCGCGCAGTGGTGCCCGCGTGATCCTGGCTGACGAGCAGGAAGAGTTCGGCGGCAGCCTGCTCGACACCCGCGAAACCCTCGACGGCAAGCCTGCTGCCGACTGGGTCAACGCCGTGGTCAAAGAGCTGGAAGGCCTGcc               <  2:320621/150‑1 (MQ=255)                                                                                                                                           gcgcAGTGGTGCCCGCGTGATCCTGGCTGACGAGCAGGAAGAGTTCGGCGGCAGCCTGCTCGACACCCGCGAAACCCTCGACGGCAAGCCTGCTGCCGACCGGGTCAACGCCGTGGTCAAAGAGCTGGAAGGCCTGCCGGAAGTGACCct   <  2:208062/150‑1 (MQ=255)                                                                                                                                            cgcagtgGTGCCCGCGTGATCCTGGCTGACGAGCAGGAAGAGTTCGGCGGCAGCCTGCTCGACACCCGCGAAACCCTCGACGGCAAGCCTGCTGCCGACTGGGTCAACGCCGTGGTCAAAGAGCTGGAAGGCCTGCCGGAAGTGACCctg  <  2:211094‑M2/143‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                               GTACATCCGTAAAGCCGCCGGCCTGGGCCGTGCGCCGCTGCAGAACGATCCTGACAGCTACGACTACATGAACCGGCACTGCGACGTGCTGATCGTCGGCGCCGGCCCTGCTGGCCTGGCTGCCGCACTGGCCGCTGCGCGCAGTGGTGCCCGCGTGATCCTGGCTGACGAGCAGGAAGAGTTCGGCGGCAGCCTGCTCGACACCCGCGAAACCCTCGACGGCAAGCCTGCTGCCGACTGGGTCAACGCCGTGGTCAAAGAGCTGGAAGGCCTGCCGGAAGTGACCCTG  >  NC_002947/390161‑390449

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.