New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 428663	36 (1.220)	3 (0.100)	3/240	NT	7.7%	coding (347/957 nt)	PP_0351	transmembrane sensor
	?	NC_002947	= 428728	37 (1.280)					coding (282/957 nt)	PP_0351	transmembrane sensor

TGGTGGCCGGTTTCGACCGAGATTTCGCCCTGGTGCAGCACGATCACCCGTTGCGCGCCGGCGTACTCGATGTCCACGGCGGTGTGGGTGTTCAGGCTCAGCAGTGTGCCGTCTTCTAGGCGCAAGG‑TGCGTAATTCACCCGTGGCGGTGCGCTGGTCGGCCAGCCAGTAGCTGGGTGCCAGCGACGGGGCGCCGACCCATGCCAGCAGCGCGCCGAGCAGAAACGTGCCGGCCAGCCCGCCGCCAACCTTGCCAATGCGTCGCCGCAGGCTGGCGCGCGATTGCAGCAGCGCCTG  >  NC_002947/428516‑428811                                                                                                                                                     |                                                                                                                                                     tggtggCCGGTTTCGACCGAGATTTCGCCCTGGTGCAGCACGATCACCCGTTGCGCGCCGGCGTACTCGATGTCCACGGCGGTGTGGGTGTTCAGGCTCAGCAGTGTGCCGTCTTCTAGGCGCAAGG‑TGCGTAATTCACCCGTGGCGGTg                                                                                                                                                    >  1:84203/1‑150 (MQ=255)      gCCGGTTTCGACCGAGATTTCGCCCTGGTGCAGCACGATCACCCGTTGCGCGCCGGCGTACTCGATGTCCACGGCGGTGTGGGTGTTCAGGCTCAGCAGTGTGCCGTCTTCTAGGCGCAAGG‑TGCGTAATTCACCCGTGGCGGTGCGCTg                                                                                                                                               >  1:317553/1‑150 (MQ=255)         ggTTTCGACCGAGATTTCGCCCTGGTGCAGCACGATCACCCGTTGCGCGCCGGCGTACTCGATGTCCACGGCGGTGTGGGTGTTCAGGCTCAGCAGTGTGCCGTCTTCTAGGCGCAAGGCAACGT‑ATTCACCCGTGGCGGTGCGCTGGTc                                                                                                                                            <  1:619173/150‑1 (MQ=255)              cggccGAGCTTTCGCCCTGGTGCCGCACTATCACCCGTTGCGCGCCGGCGTACTCGATGTCCACGGCGGTGTGGGTGTTCAGTCTCAGCAGTGTGCAGTCTTCTAGGCGCAAGG‑TGCGTAATTCACCCGTGGCGGTGCGCTGGTCGccca                                                                                                                                       <  2:160183/147‑1 (MQ=255)              cGACCGAGCTTTCGCCCTGGTGCAGCACGATCACCCGTTGCGCGCCGGCGTACTCGATGTCCACGGCGGTGTGGGTGTTCAGGCTCAGCAGTGTGCCGTCTTCTAGGCGCAAGG‑TGCGTAATTCACCCGTGGCGGTGCGCTGGTCGgcca                                                                                                                                       <  2:84203/150‑1 (MQ=255)                  cGAGATTTCGCCCTGGTGCAGCACGATCACCCGTTGCGCGCCGGCGTACTCGATGTCCACGGCGGTGTGGGTGTTCAGGCTCAGCAGTGTGCCGTCTTCTAGGCGCAAGG‑TGCGTAATTCACCCGTGGCGGTGCGCTGGTCGgccagcca                                                                                                                                   >  2:101885/1‑150 (MQ=255)                  cGAGATTTCGCCCTGGTGCAGCACGATCACCCGTTGCGCGCCGGCGTACTCGATGTCCACGGCGGTGTGGGTGTTCAGGCTCAGCAGTGTGCCGTCTTCTAGGCGCAAGG‑TGCGTAATTCACCCGTGGCGGTGCGCTGGTCGgccagcca                                                                                                                                   <  1:101885/150‑1 (MQ=255)                       tttCGCCCTGGTGCAGCACGATCACCCGTTGCGCGCCGGCGTACTCGATGTCCACGGCGGTGTGGGTGTTCAGGCTCAGCAGTGTGCCGTCTTCTAGGCGCAAGG‑TGCGTAATTCACCCGTGGCGGTGCGCTGGTCGGCCAGCCAGTAGc                                                                                                                              >  2:254366/1‑150 (MQ=255)                       tttCGCCCTGGTGCAGCACGATCACCCGTTGCGCGCCGGCGTACTCGATGTCCACGGCGGTGTGGGTGTTCAGGCTCAGCAGTGTGCCGTCTTCTAGGCGCAAGG‑TGCGTAATTCACCCGTGGCGGTGCGCTGGTCGGCCAGCCAGTAGc                                                                                                                              >  2:39862/1‑150 (MQ=255)                            cccTGGTGCAGCACGATCACCCGTTGCGCGCCGGCGTACTCGATGTCCACGGCGGTGTGGGTGTTCAGGCTCAGCAGTGTGCCGTCTTCTAGGCGCAAGG‑TGCGTAATTCACCCGTGGCGGTGCGCTGGTCGGCCAGCCAGTAGCTGGGt                                                                                                                         >  1:749628/1‑150 (MQ=255)                            cccTGGTGCAGCACGATCACCCGTTGCGCGCCGGCGTACTCGATGTCCACGGCGGTGTGGGTGTTCAGGCTCAGCAGTGTGCCGTCTTCTAGGCGCAAGG‑TGCGTAATTCACCCGTGGCGGTGCGCTGGTCGGCCAGCCAGTAGCTGGGt                                                                                                                         >  1:749611/1‑150 (MQ=255)                            cccTGGTGCAGCACGATCACCCGTTGCGCGCCGGCGTACTCGATGTCCACGGCGGTGTGGGTGTTCAGGCTCAGCAGTGTGCCGTCTTCTAGGCGCAAGG‑TGCGTAATTCACCCGTGGCGGTGCGCTGGTCGGCCAGCCAGTAGCTGGGt                                                                                                                         <  1:312072/150‑1 (MQ=255)                               tGGTGCAGCACGATCACCCGTTGCGCGCCGGCGTACTCGATGTCCACGGCGGTGTGGGTGTTCAGGCTCAGCAGTGTGCCGTCTTCTAGGCGCAAGG‑TGCGTAATTCACCCGTGGCGGTGCGCTGGTCGGCCAGCCAGTAGCTGGGTGcc                                                                                                                      >  1:457100/1‑150 (MQ=255)                                            tCACCCGTTGCGCGCCGGCGTACTCGATGTCCACGGCGGTGTGGGTGTTCAGGCTCAGCAGTGTGCCGTCTTCTAGGCGCAAGG‑TGCGTAATTCACCCGTGGCGGcgcgctgctggcatgggtcggcgccccgtcgctggcacccagcta                                                                                                         >  1:305588‑M1/1‑105 (MQ=255)                                                   ttGCGCGCCGGCGTACTCGATGTCCACGGCGGTGTGGGTGTTCAGGCTCAGCAGTGTGCCGTCTTCTAGGCGCAAGG‑TGCGTAATTCACCCGTGGCGGTGCGCTGGTCGGCCAGCCAGTAGCTGGGTGCCAGCGACggg                                                                                                             >  2:560568/1‑139 (MQ=255)                                                   ttGCGCGCCGGCGTACTCGATGTCCACGGCGGTGTGGGTGTTCAGGCTCAGCAGTGTGCCGTCTTCTAGGCGCAAGG‑TGCGTAATTCACCCGTGGCGGTGCGCTGGTCGGCCAGCCAGTAGCTGGGTGCCAGCGACggg                                                                                                             <  1:560568/139‑1 (MQ=255)                                                           cGGCGTACTCGATGTCCACGGCGGTGTGGGTGTTCAGGCTCAGCAGTGTGCCGTCTTCTAGGCGCAAGG‑TGCGTAATTCACCCGTGGCGGcgcgctgctggcatgggtcggcgccccgtcgctggcacccagctactggctggccgacca                                                                                          <  2:305588‑M1/150‑61 (MQ=255)                                                               gTACTCGATGTCCACGGCGGTGTGGGTGTTCAGGCTCAGCAGTGTGCCGTCTTCTAGGCGCAAGG‑TGCGTAATTCACCCGTGGCGGTGCGCTGGTCGGCCAGCCAGTAGCTGGGTGCCAGCGACGGGGCGCCGACCCATGCCAGCAgcgc                                                                                      <  1:39862/150‑1 (MQ=255)                                                                  cTCGATGTCCACGGCGGTGTGGGTGTTCAGGCTCAGCAGTGTGCCGTCTTCTAGTCGCAAGG‑TGCGTAATTCACCCGTGGCGGTGCGCTGGTCGGCCACTTAGTAGCTGGGTGCCAGCGACGGGGCGCCGACCCATGCCAGCAGCGCGcc                                                                                   >  1:145456‑M2/1‑148 (MQ=255)                                                                  cTCGATGTCCACGGCGGTGTGGGTGTTCAGGCTCAGCAGTGTGCCGTCTTCTAGGCGCAAGG‑TGCGTAATTCACCCGTGGCGGTGCGCTGGTCGGCCAGCCAGTAGCTGGGTGCCAGCGACGGGGCGCCGACCCATGCCagcagc                                                                                        >  1:480417/1‑145 (MQ=255)                                                                  cTCGATGTCCACGGCGGTGTGGGTGTTCAGGCTCAGCAGTGTGCCGTCTTCTAGGCGCAAGG‑TGCGTAATTCACCCGTGGCGGTGCGCTGGTCGGCCAGCCAGTAGCTGGGTGCCAGCGACGGGGCGCCGACCCATGCCagcagc                                                                                        <  2:480417/145‑1 (MQ=255)                                                                            aCGGCGGTGTGGGTGTTCAGGCTCAGCAGTGTGCCGTCTTCTAGGCGCAAGG‑TGCGTAATTCACCCGTGGCGGTGCGCTGGTCGGCCAGCCAGTAGCTGGGTGCCAGCGACGGGGCGCCGACCCATGCCAGCAGCGCGCCGAGCAGAAAc                                                                         >  1:588350/1‑150 (MQ=255)                                                                              ggcggTGTGGGTGTTCAGGCTCAGCAGTGTGCCGTCTTCTAGGCGCAAGG‑TGCGTAATTCACCCGTGGCGGTGCGCTGGTCGGCCAGCCAGTAGCTGGGTGCCAGCGACGGGGCGCCGACCCATGCCAGCAGCGCGCCGAGCAGAAACGt                                                                       <  1:254366/150‑1 (MQ=255)                                                                                 ggTGTGGGTGTTCAGGCTCAGCAGTGCGCCGTCTTCAAGTTTTAAGG‑TGCGTAATTCACCCGTGGCGGTGCGCTGGTCGGCCAGCCAGTAGCTGGGTGCCCGCGACGGGGCGCCGACCCATGCCAGCAGCGCGCAGAGCAGAAACGTGcc                                                                    <  1:564013/150‑1 (MQ=255)                                                                                           ttCAGGCTCAGCAGTGTGCCGTCTTCTAGGCGCAAGG‑TGCGTAATTCACCCGTGGCGGTGCGCTGGTCGGCCAGCCAGTAGCTGGGTGCCAGCGACGGGGCGCCGACCCATGCCAGCAGCGCGCCGAGCAGAAACGTGCCGGCCAGCccg                                                          >  2:502776/1‑150 (MQ=255)                                                                                           ttCAGGCTCAGCAGTGTGCCGTCTTCTAGGCGCAAGG‑TGCGTAATTCACCCGTGGCGGTGCGCTGGTCGGCCAGCCAGTAGCTGGGTGCCAGCGACGGGGCGCCGACCCATGCCAGCAGCGCGCCGAGCAGAAACGTGCCGGCCAGCccg                                                          >  1:255387/1‑150 (MQ=255)                                                                                           ttCAGGCGCAGCAGTGTGCCGTCTTCTAGGCGCAAGG‑TGCGTAATCCACCCGTGGCGGcgcgctgctggcatgggtcggcgccccgtcgctggcacccagctactggctggccgaccagcgcaccgccacgcgtgaattacgcaccttgc                                                          <  2:187352‑M1/150‑93 (MQ=255)                                                                                              aGGCTCAGCAGTGTGCCGTCTTCTAGGCGCAAGG‑TGCGTAATTCACCCGTGGCGGTGCGCTGGTCGGCCAGCCAGTAGCTGGGTGCCAGCGACGGGGCGCCGACCCATGCCAGCAGCGCGCCGAGCAGAAACGTGCCGGCCAGCccgccg                                                       >  1:173764/1‑150 (MQ=255)                                                                                                gCTCAGCAGTGTGCCGTCTTCTAGGCGCAAGG‑TGCGTAATTCACCCGTGGCGGTGCGCTGGTCGGCCAGCCAGTAGCTGGGTGCCAGCGACGGGGCGCCGACCCATGCCAGCAGCGCGCCGAGCAGAAACGTGCCGGCCAGCCCgccgcc                                                     >  2:454478/1‑150 (MQ=255)                                                                                                     gcagTGTGCCGTCTTCTAGGCGCAAGG‑TGCGTAATTCACCCGTGGCGGTGCGCTGGTCGGCCAGCCAGTAGCTGGGTGCCAGCGACGGGGCGCCGACCCATGCCAGCAGCGCGCCGAGCAGAAACGTGCCGGCCAGCCCGCCGCCAACCt                                                >  1:798702/1‑150 (MQ=255)                                                                                                        gtgtGCCGTCTTCTAGGCGCAAGG‑TGCGTAATTCACCCGTGGCGGTGCGCTGGTCGGCCAGCCAGTAGCTGGGTGCCAGCGACGGGGCGCCGACCCATGCCAGCAGCGCGCCGAGCAGAAACGTGCCGGCCAGCCCGCCGCCAACCTTGc                                             <  1:785493/150‑1 (MQ=255)                                                                                                            gCCGTCTTCTAGGCGCAAGG‑TGCGTAATTCACCCGTGGCGGTGCGCTGGTCGGCCAGCCAGTAGCTGGGTGCCAGCGACGGGGCGCCGACCCATGCCAGCAGCGCGCCGAGCAGAAACGTGCCGGCCAGCCCGCCGCCAACCTTGCCAAt                                         <  2:588350/150‑1 (MQ=255)                                                                                                            gCCGTCTTCTAGGCGCAAGG‑AGCGTCATTTACCCGTGGCGGTGTGCTGGTCGGCGAGACAGTAACTGGGTGCCAGCGACGGGGCGGCGCCCAACGCCAGCAGCGCACCGAGCAGAAGCGTGCCGGCCAGATCGCCGCGAATCTTTCTAAt                                         >  2:325270/1‑150 (MQ=255)                                                                                                             ccGTCTTCTAGGCGCAAGG‑TGCGTAATTCACCCGTGGCGGTGCGCTGGTCGGCCAGCCAGTAGCTGGGTGCCAGCGACGGGGCGCCGACCCATGCCAGCAGCGCGCCGAGCAGAAACGTGCCGGCCAGCCCGCCGCCAACCTTGCCAATg                                        >  1:737635/1‑150 (MQ=255)                                                                                                              cGTCTTCTAGGCGCAAGG‑TGCGTAATTCATCCGTGGCGGTGCGCTGGTCGGCCAGCCAGTAGCTGGGTGCCAGCGACGGGGCGCCGACCCATGCCAGCAGCGCGCCGAGCAGAAACGTGCCGGCCAGCCCGCCGCCAACCTTGCCAATGc                                       >  2:293956/1‑150 (MQ=255)                                                                                                              cGTCTTCTAGGCGCAAGG‑TGCGTAATTCACCCGTGGCGGTGCGCTGGTCGGCCAGCCAGTAGCTGGGTGCCAGCGACGGGGCGCCGACCCATGCCAGCAGCGCGCCGAGCAGAAACGTGCCGGCCAGCCCGCCGCCAACCTTGCCAATGc                                       <  2:255387/150‑1 (MQ=255)                                                                                                                tcttctAGGCGCAAGG‑TGCGTAATTCACCCGTGGCGGTGCGCTGGTCGGCCAGCCAGTAGCTGGGTGCCAGCGACGGGGCGCCGACCCATGCCAGCAGCGCGCCGAGCAGAAACGTGCCGGCCAGCCCGCCGCCAACCTTGCCAATGCGt                                     >  2:117050/1‑150 (MQ=255)                                                                                                                      aGGCGCAAGG‑TGCGTAATTCACCCGTGGCGGTGCGCTGGTCGGCCAGCCAGTAGCTGGGTGCCAGCGACGGGGCGCCGACCCATGCCAGCAGCGCGCCGAGCAGAAACGTGCCGGCCAGCCCGCCGCCAACCTTGCCAATGCGTcgccgc                               >  2:194926/1‑150 (MQ=255)                                                                                                                          gcAAGG‑TGCGTAATTCACGCGTGGCGGTGCGCTGGTCGGCCAGCCAGTAGCTGGGTGCCAGCGACGGGGCGCCGACCCATGCCAGCAGCGCGccgccacgggtggattacgcaccttgcgcctagaagacggcacactgctgcgcctgaa                           <  2:187352‑M2/150‑59 (MQ=255)                                                                                                                                       aTTCACCCGTGGCGGTGCGCTGGTCGGCCAGCCAGTAGCTGGGTGCCAGCGACGGGGCGCCGACCCATGCCAGCAGCGCGCCGAGCAGAAACGTGCCGGCCAGCCCGCCGCCAACCTTGCCAATGCGTCGCCGCAGGCTGGCGCGCGAtt               >  1:58678/1‑150 (MQ=255)                                                                                                                                        ttCACCCGTGGCGGTGCGCTGGTCGGCCAGCCAGTAGCTGGGTGCCAGCGACGGGGCGCCGACCCATGCCAGCAGCGCGCCGAGCAGAAACGTGCCGGCCAGCCCGCCGCCAACCTTGCCAATGCGTCGCCGCAGGCTGGCGCGCGATTg              <  2:749611/150‑1 (MQ=255)                                                                                                                                        ttCACCCGTGGCGGTGCGCTGGTCGGCCAGCCAGTAGCTGGGTGCCAGCGACGGGGCGCCGACCCATGCCAGCAGCGCGCCGAGCAGAAACGTGCCGGCCAGCCCGCCGCCAACCTTGCCAATGCGTCGCCGCAGGCTGGCGCGCGATTg              <  2:749628/150‑1 (MQ=255)                                                                                                                                                    ggcgcgctgctggcatgggtcggcgccccgtcgctggcacccagctactaagtggccgaccagcgcaccgccacgggtgaattacgcaccttgcgactagaagacggcacactgctgagcctgaacacccacaccgccgtggacatcgag  >  1:145456‑M1/1‑2 (MQ=255)                                                                                                                                                     |                                                                                                                                                     TGGTGGCCGGTTTCGACCGAGATTTCGCCCTGGTGCAGCACGATCACCCGTTGCGCGCCGGCGTACTCGATGTCCACGGCGGTGTGGGTGTTCAGGCTCAGCAGTGTGCCGTCTTCTAGGCGCAAGG‑TGCGTAATTCACCCGTGGCGGTGCGCTGGTCGGCCAGCCAGTAGCTGGGTGCCAGCGACGGGGCGCCGACCCATGCCAGCAGCGCGCCGAGCAGAAACGTGCCGGCCAGCCCGCCGCCAACCTTGCCAATGCGTCGCCGCAGGCTGGCGCGCGATTGCAGCAGCGCCTG  >  NC_002947/428516‑428811

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.