New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 636215	43 (1.460)	4 (0.140)	4/234	NT	8.9%	coding (436/1350 nt)	mpl	UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase
	?	NC_002947	= 636232	41 (1.460)					coding (453/1350 nt)	mpl	UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase

CGACCACGTGCTGCAAGGCCGCTGGGTGCTGGCCGTTGCCGGTACTCACGGCAAGACCACCACCAGCAGCATGCTGGCCTGGGTGCTGGAGCACGCCGGCATGAGCCCGGGCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAGTTCGTCCACTATCACCCGCGTACCGCGATCCTCAACAACCTTGAGTTCGATCACGCGGACATCTTCCCG  >  NC_002947/636067‑636364                                                                                                                                                     |                                                                                                                                                      cGACCACGTGCTGCAAGGCCGCTGGGTGCTGGCCGTTGCCGGTACTCACGGCAAGACCACCACCAGCAGCATGCTGGCCTGGGTGCTGGAGCACGCCGGCATGAGCCCGGGCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTc                                                                                                                                                      >  2:272716/1‑150 (MQ=255)   aCCACGTGCTGCAAGGCCGCTGGGTGCTGGCCGTTGCCGGTACTCACGGCAAGACCACCACCAGCAGCATGCTGGCCTGGGTGCTGGAGCACGCCGGCATGAGCCCGGGCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCgg                                                                                                                                                    <  1:468254/150‑1 (MQ=255)      aCGTGCTGCAAGGCCGCTAGGTGCTGGCCGTTGCCGGTACTCACGGCAAGACGAACACCAGCAGCATGCTGGCCTGGGTGCTGGAGCACGCCGGCATGAGCCCGGGCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGccc                                                                                                                                                 >  2:69493/1‑150 (MQ=255)            tgcAAGGCCGCTGGGTGCTGGCCGTTGCCGGTACTCACGGCAAGACCACCACCAGCAGCATGCTGGCCTGGGTGCTGGAGCACGCCGGCATGAGCCCGGGCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTgg                                                                                                                                           <  1:608169/150‑1 (MQ=255)             gcAAGGCCGCTGGGTGCTGGCCGTTGCCGGTACTCACGGCAAGACCACCACCAGCAGCATGCTGGCCTGGGTGCTGGAGCACGCCGGCATGAGCCCGGGCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTggg                                                                                                                                          >  2:485816/1‑150 (MQ=255)              cAAGGCCGCTGGGTGCTGGCCGTTGCCGGTACTCACGGCAAGACCACCACCAGCAGCATGCTGGCCTGGGTGCTGGAGCACGCCGGCATGAGCCCGGGCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGc                                                                                                                                         <  2:530224/150‑1 (MQ=255)                  gCCGCTGGGTGCTGGCCGTTGCCGGTACTCACGGCAAGACCACCACCAGCAGCATGCTGGCCTGGGTGCTGGAGCACGCCGGCATGAGCCCGGGCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACa                                                                                                                                     <  2:502421‑M2/150‑2 (MQ=255)                             cTGGCCGTTGCCGGTACTCACGGCAAGACCACCACCAGCAGCATGCTGGCGTGGGTGCTGGAGCACGCCGGCATGAGCCCGGGCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCttt                                                                                                                          <  2:364483/150‑1 (MQ=255)                              tGGCCGTTGCCGGTACTCACGGCAAGACCACCACCAGCAGCATGCTGGCCTGGGTGCTGGAGCACGCCGGCATGAGCCCGGGCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTtg                                                                                                                         >  1:667804/1‑150 (MQ=255)                                gCCGTTGCCGGTACTCACGGCAAGACCACCACCAGCAGCATGCTGGCCTGGGTGCTGGAGCACGCCGGCATGAGCCCGGGCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTtgtg                                                                                                                       <  2:616759/150‑1 (MQ=255)                                        cGGTACTCACGGCAAGACCACCACCAGCAGCATGCTGGCCTGGGTGCTGGAGCACGCCGGCATGAGCCCGGGCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTgtcgcccaagcgggccgacgccgagaagttctgc                                                                                                                     >  2:361528‑M1/1‑110 (MQ=255)                                        cGGTACTCACGGCAAGACCACCACCAGCAGCATGCTGGCCTGGGTGCTGGAGCACGCCGGCATGAGCCCGGGCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTgtcgcccaagcgggccgacgccgagaagttctgc                                                                                                                     <  1:361528‑M1/144‑35 (MQ=255)                                            aCTCACGGCAAGACCACCACCAGCAGCATGCTGGCCTGGGTGCTGGAGCACGCCGGCATGAGCCCGGGCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCcgac                                                                                                           <  1:230179/150‑1 (MQ=255)                                              tCACGGCAAGACCACCACCAGCAGCATGCTGGCCTGGGTGCTGGAGCACGCCGGCATGAGCCCGGGCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCcgacga                                                                                                         <  2:493749/150‑1 (MQ=255)                                                               ccaGCAGCATGCTGGCCTGGGTGCTGGAGCACGCCGGCATGAGCCCGGGCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTgtcgcccaagcgggccgacgccgagaa                                                                                                                            <  2:732800‑M1/114‑28 (MQ=255)                                                               ccaGCAGCATGCTGGCCTGGGTGCTGGAGCACGCCGGCATGAGCCCGGGCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTgtcgcccaagcgggccgacgccgagaa                                                                                                                            >  1:732800‑M1/1‑87 (MQ=255)                                                                cagcagCATGCTGGCCTGGGTGCTGGAGCACGCCGGCATGAGCCCGGGCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCcttctt                                                                                       >  1:437045/1‑150 (MQ=255)                                                                             gCCTGGGTGCTGGAGCACGCCGGCATGAGCCCGGGCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCg                                                                          >  1:563173/1‑150 (MQ=255)                                                                               cTGGGTGCTGGAGCACGCCGGCATGAGCCCGGGCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGaa                                                                        >  1:217681/1‑150 (MQ=255)                                                                                tGGGTGCTGGAGCACGCCGGCATGAGCCCGGGCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAg                                                                       <  2:563173/150‑1 (MQ=255)                                                                                 gggTGCTGGAGCACGCCGGCATGAGCCCGGGCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAGt                                                                      <  1:740909/150‑1 (MQ=255)                                                                                 gggTGCTGGAGCACGCCGGCATGAGCCCGGGCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAGt                                                                      <  1:272716/150‑1 (MQ=255)                                                                                   gTGCTGGAGCACGCCGGCATGAGCCCGGGCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAGTTc                                                                    <  1:502421/150‑1 (MQ=255)                                                                                              cGCCGGCATGAGCCCGGGCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAGTTCGTCCACTATCa                                                         <  2:667804/150‑1 (MQ=255)                                                                                                ccGGCATGAGCCCGGGCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAGTTCGTCCACTATCAcc                                                       <  2:92150/150‑1 (MQ=255)                                                                                                     aTGAGCCCGGGCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAGTTCGTCCACTATCACCCGCGt                                                  >  2:97889/1‑150 (MQ=255)                                                                                                       gAGCCCGGGCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAGTTCGTCCACTATCACCCGCGTAc                                                >  2:252491/1‑150 (MQ=255)                                                                                                         gCCCGGGCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAGTTCGTCCACTATCACCCGCGTACcg                                              <  2:217681/150‑1 (MQ=255)                                                                                                               gCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTtgt                                                                                                                        <  1:576573/70‑1 (MQ=255)                                                                                                               gCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTtgt                                                                                                                        <  1:576563/70‑1 (MQ=255)                                                                                                               gCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTtgt                                                                                                                        >  2:576563/1‑70 (MQ=255)                                                                                                               gCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTtgt                                                                                                                        >  2:576573/1‑70 (MQ=255)                                                                                                               gCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACa                                                                                  >  1:193524/1‑108 (MQ=255)                                                                                                               gCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACa                                                                                  <  2:193524/108‑1 (MQ=255)                                                                                                                     tGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAGTTCGt                                                                  <  2:418085/118‑1 (MQ=255)                                                                                                                     tGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAGTTCGt                                                                  >  1:418085/1‑118 (MQ=255)                                                                                                                     tGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAGTTCGTCCACTATCACCCACGTACCGCGAt                                          >  1:117127/1‑142 (MQ=255)                                                                                                                     tGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAGTTCGTCCACTATCACCCACGTACCGCGAt                                          <  2:117127/142‑1 (MQ=255)                                                                                                                       aTTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAGTTCGTCCACTATCACCCGCGTACCGCGATCCTCaacaac                                <  2:214329/150‑1 (MQ=255)                                                                                                                        ttGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAGTTCGTCCACTATCACCCGCGTACCGCGATCCTCAACAAcc                               <  1:69493/150‑1 (MQ=255)                                                                                                                            cggcgTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAGTTCGTCCACTATCACCCGCGTACCGCGATCCTCAACAACCTTGa                           >  2:380826/1‑150 (MQ=255)                                                                                                                            cggcgTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAGTTCGTCCACTATCACCCGCGTACCGCGATCCTCAACAACCTTGa                           <  1:380826/150‑1 (MQ=255)                                                                                                                               cgTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAGTTCGTCCACTATCACCCGCGTACCGCGATCCTCAACAACCTTGAGtt                        <  1:329353/150‑1 (MQ=255)                                                                                                                                     gCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACacgccgagaagttctgcggcacgccgccaatcaggaagcccgggctcatgccggcgtgctccagcacccaggccagcatgctgctggtggtggtcttgccgtgagtaccg                        >  2:361528‑M2/1‑34 (MQ=255)                                                                                                                                     gCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACacgccgagaagttctgcggcacgccgccaatcaggaagcccgggctcatgccggcgtgctccagcacccaggccagcatgctgctggtggtggtcttgccgtgagtaccg                        <  1:361528‑M2/144‑111 (MQ=255)                                                                                                                                     gCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGaa                                                                        >  1:789891/1‑96 (MQ=255)                                                                                                                                     gCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGaa                                                                        <  2:789891/96‑1 (MQ=255)                                                                                                                                       aGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAGTTCGTCCACTATCACCCGCGTACCGCGATCCTCAACAACCTTGAGTTCGATCAcg                >  2:746273/1‑150 (MQ=255)                                                                                                                                            ttCTCGGCGTCGGCCCGCTTGGGCGACacgccgagaagttctgcggcacgccgccaatcaggaagcccgggctcatgccggcgtgctccagcacccaggccagcatgctgctgg                                               >  1:732800‑M2/1‑27 (MQ=255)                                                                                                                                            ttCTCGGCGTCGGCCCGCTTGGGCGACacgccgagaagttctgcggcacgccgccaatcaggaagcccgggctcatgccggcgtgctccagcacccaggccagcatgctgctgg                                               <  2:732800‑M2/114‑88 (MQ=255)                                                                                                                                            ttCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAGTTCGTCCACTATCACCCGCGTACCGCGATCCTCAACAACCTTGAGTTCGATCACGCGGAc           <  1:485816/150‑1 (MQ=255)                                                                                                                                              ctcGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAGTTCGTCCACTATCACCCGCGTACCGCGATCCTCAACAACCTTGAGTTCGATCACGCGGACAt         >  2:637693/1‑150 (MQ=255)                                                                                                                                               tcGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGaa                                                                        >  1:330198/1‑86 (MQ=255)                                                                                                                                               tcGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGaa                                                                        <  2:330198/86‑1 (MQ=255)                                                                                                                                                    gTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAGTTCGTCCACTATCACCCGCGTACCGCGATCCTCAACAACCTTGAGTTCGATCACGCGGACATCTTccc   >  1:46379/1‑150 (MQ=255)                                                                                                                                                     tgtcgcccaagcgggccgacgccgagaagttctgcggcacgccgccaatcaggaagcccgggctcatgccggcgtgctccagcacccaggccagcatgctgctggtggtggtcttgccgtgagtaccggcaacggccagcacccagcggc  <  2:502421‑M1/150‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                      CGACCACGTGCTGCAAGGCCGCTGGGTGCTGGCCGTTGCCGGTACTCACGGCAAGACCACCACCAGCAGCATGCTGGCCTGGGTGCTGGAGCACGCCGGCATGAGCCCGGGCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAGTTCGTCCACTATCACCCGCGTACCGCGATCCTCAACAACCTTGAGTTCGATCACGCGGACATCTTCCCG  >  NC_002947/636067‑636364

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.