New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 636215	43 (1.460)	4 (0.140)	4/234	NT	8.9%	coding (436/1350 nt)	mpl	UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase
	?	NC_002947	= 636232	41 (1.460)					coding (453/1350 nt)	mpl	UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase

GCCGCTGGGTGCTGGCCGTTGCCGGTACTCACGGCAAGACCACCACCAGCAGCATGCTGGCCTGGGTGCTGGAGCACGCCGGCATGAGCCCGGGCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAGTTCGTCCACTATCACCCGCGTACCGCGATCCTCAACAACCTTGAGTTCGATCACGCGGACATCTTCCCGGACCTGGCCTCGATC  >  NC_002947/636084‑636379                                                                                                                                                     |                                                                                                                                                    gCCGCTGGGTGCTGGCCGTTGCCGGTACTCACGGCAAGACCACCACCAGCAGCATGCTGGCCTGGGTGCTGGAGCACGCCGGCATGAGCCCGGGCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACa                                                                                                                                                    <  2:502421‑M2/150‑2 (MQ=255)            cTGGCCGTTGCCGGTACTCACGGCAAGACCACCACCAGCAGCATGCTGGCGTGGGTGCTGGAGCACGCCGGCATGAGCCCGGGCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCttt                                                                                                                                         <  2:364483/150‑1 (MQ=255)             tGGCCGTTGCCGGTACTCACGGCAAGACCACCACCAGCAGCATGCTGGCCTGGGTGCTGGAGCACGCCGGCATGAGCCCGGGCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTtg                                                                                                                                        >  1:667804/1‑150 (MQ=255)               gCCGTTGCCGGTACTCACGGCAAGACCACCACCAGCAGCATGCTGGCCTGGGTGCTGGAGCACGCCGGCATGAGCCCGGGCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTtgtg                                                                                                                                      <  2:616759/150‑1 (MQ=255)                           aCTCACGGCAAGACCACCACCAGCAGCATGCTGGCCTGGGTGCTGGAGCACGCCGGCATGAGCCCGGGCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCcgac                                                                                                                          <  1:230179/150‑1 (MQ=255)                             tCACGGCAAGACCACCACCAGCAGCATGCTGGCCTGGGTGCTGGAGCACGCCGGCATGAGCCCGGGCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCcgacga                                                                                                                        <  2:493749/150‑1 (MQ=255)                                               cagcagCATGCTGGCCTGGGTGCTGGAGCACGCCGGCATGAGCCCGGGCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCcttctt                                                                                                      >  1:437045/1‑150 (MQ=255)                                                            gCCTGGGTGCTGGAGCACGCCGGCATGAGCCCGGGCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCg                                                                                         >  1:563173/1‑150 (MQ=255)                                                              cTGGGTGCTGGAGCACGCCGGCATGAGCCCGGGCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGaa                                                                                       >  1:217681/1‑150 (MQ=255)                                                               tGGGTGCTGGAGCACGCCGGCATGAGCCCGGGCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAg                                                                                      <  2:563173/150‑1 (MQ=255)                                                                gggTGCTGGAGCACGCCGGCATGAGCCCGGGCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAGt                                                                                     <  1:740909/150‑1 (MQ=255)                                                                gggTGCTGGAGCACGCCGGCATGAGCCCGGGCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAGt                                                                                     <  1:272716/150‑1 (MQ=255)                                                                  gTGCTGGAGCACGCCGGCATGAGCCCGGGCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAGTTc                                                                                   <  1:502421/150‑1 (MQ=255)                                                                             cGCCGGCATGAGCCCGGGCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAGTTCGTCCACTATCa                                                                        <  2:667804/150‑1 (MQ=255)                                                                               ccGGCATGAGCCCGGGCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAGTTCGTCCACTATCAcc                                                                      <  2:92150/150‑1 (MQ=255)                                                                                    aTGAGCCCGGGCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAGTTCGTCCACTATCACCCGCGt                                                                 >  2:97889/1‑150 (MQ=255)                                                                                      gAGCCCGGGCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAGTTCGTCCACTATCACCCGCGTAc                                                               >  2:252491/1‑150 (MQ=255)                                                                                        gCCCGGGCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAGTTCGTCCACTATCACCCGCGTACcg                                                             <  2:217681/150‑1 (MQ=255)                                                                                              gCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTtgt                                                                                                                                       <  1:576563/70‑1 (MQ=255)                                                                                              gCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTtgt                                                                                                                                       <  1:576573/70‑1 (MQ=255)                                                                                              gCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTtgt                                                                                                                                       >  2:576563/1‑70 (MQ=255)                                                                                              gCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTtgt                                                                                                                                       >  2:576573/1‑70 (MQ=255)                                                                                              gCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACa                                                                                                 >  1:193524/1‑108 (MQ=255)                                                                                              gCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACa                                                                                                 <  2:193524/108‑1 (MQ=255)                                                                                                    tGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAGTTCGt                                                                                 >  1:418085/1‑118 (MQ=255)                                                                                                    tGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAGTTCGt                                                                                 <  2:418085/118‑1 (MQ=255)                                                                                                    tGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAGTTCGTCCACTATCACCCACGTACCGCGAt                                                         >  1:117127/1‑142 (MQ=255)                                                                                                    tGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAGTTCGTCCACTATCACCCACGTACCGCGAt                                                         <  2:117127/142‑1 (MQ=255)                                                                                                      aTTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAGTTCGTCCACTATCACCCGCGTACCGCGATCCTCaacaac                                               <  2:214329/150‑1 (MQ=255)                                                                                                       ttGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAGTTCGTCCACTATCACCCGCGTACCGCGATCCTCAACAAcc                                              <  1:69493/150‑1 (MQ=255)                                                                                                           cggcgTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAGTTCGTCCACTATCACCCGCGTACCGCGATCCTCAACAACCTTGa                                          >  2:380826/1‑150 (MQ=255)                                                                                                           cggcgTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAGTTCGTCCACTATCACCCGCGTACCGCGATCCTCAACAACCTTGa                                          <  1:380826/150‑1 (MQ=255)                                                                                                              cgTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAGTTCGTCCACTATCACCCGCGTACCGCGATCCTCAACAACCTTGAGtt                                       <  1:329353/150‑1 (MQ=255)                                                                                                                    gCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACacgccgagaagttctgcggcacgccgccaatcaggaagcccgggctcatgccggcgtgctccagcacccaggccagcatgctgctggtggtggtcttgccgtgagtaccg                                       >  2:361528‑M2/1‑34 (MQ=255)                                                                                                                    gCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACacgccgagaagttctgcggcacgccgccaatcaggaagcccgggctcatgccggcgtgctccagcacccaggccagcatgctgctggtggtggtcttgccgtgagtaccg                                       <  1:361528‑M2/144‑111 (MQ=255)                                                                                                                    gCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGaa                                                                                       <  2:789891/96‑1 (MQ=255)                                                                                                                    gCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGaa                                                                                       >  1:789891/1‑96 (MQ=255)                                                                                                                      aGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAGTTCGTCCACTATCACCCGCGTACCGCGATCCTCAACAACCTTGAGTTCGATCAcg                               >  2:746273/1‑150 (MQ=255)                                                                                                                           ttCTCGGCGTCGGCCCGCTTGGGCGACacgccgagaagttctgcggcacgccgccaatcaggaagcccgggctcatgccggcgtgctccagcacccaggccagcatgctgctgg                                                              >  1:732800‑M2/1‑27 (MQ=255)                                                                                                                           ttCTCGGCGTCGGCCCGCTTGGGCGACacgccgagaagttctgcggcacgccgccaatcaggaagcccgggctcatgccggcgtgctccagcacccaggccagcatgctgctgg                                                              <  2:732800‑M2/114‑88 (MQ=255)                                                                                                                           ttCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAGTTCGTCCACTATCACCCGCGTACCGCGATCCTCAACAACCTTGAGTTCGATCACGCGGAc                          <  1:485816/150‑1 (MQ=255)                                                                                                                             ctcGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAGTTCGTCCACTATCACCCGCGTACCGCGATCCTCAACAACCTTGAGTTCGATCACGCGGACAt                        >  2:637693/1‑150 (MQ=255)                                                                                                                              tcGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGaa                                                                                       >  1:330198/1‑86 (MQ=255)                                                                                                                              tcGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGaa                                                                                       <  2:330198/86‑1 (MQ=255)                                                                                                                                   gTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAGTTCGTCCACTATCACCCGCGTACCGCGATCCTCAACAACCTTGAGTTCGATCACGCGGACATCTTccc                  >  1:46379/1‑150 (MQ=255)                                                                                                                                         ccGCTTGGGCGCCCCGCCGGGCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAGTTCGTCCACTATCACCCGCGTACCGCGATCCTCAACAACCTTGAGGTCGATCACGCGGACATCTTCCCGGACCt            >  2:234843/1‑150 (MQ=255)                                                                                                                                                 gCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAGTTCGTCCACTATCACCCGCGTACCGCGATCCTCAACAACCTTGAg                                         >  2:755028/1‑113 (MQ=255)                                                                                                                                                 gCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAGTTCGTCCACTATCACCCGCGTACCGCGATCCTCAACAACCTTGAg                                         <  1:755028/113‑1 (MQ=255)                                                                                                                                                 gCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAGTTCGTCCACTATCACCCGCGTACCGCGATCCTCAACAACCTTGAGTTCGATCACGCGGACATCTTCCCGGACCTGGCCtcga    <  1:97889/150‑1 (MQ=255)                                                                                                                                                   gACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAGTTCGTCCACTATCACCCGCGTACCGCGATCCTCAACAACCTTGAGTTCGATCACGCGGACATCTTCCCGGACCTGGCCtcgatc  <  1:746273/150‑1 (MQ=255)                                                                                                                                                     cacGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAGTTCGTCCACTa                                                                           <  1:375779/75‑1 (MQ=255)                                                                                                                                                     cacGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAGTTCGTCCACTa                                                                           >  2:375779/1‑75 (MQ=255)                                                                                                                                                     |                                                                                                                                                    GCCGCTGGGTGCTGGCCGTTGCCGGTACTCACGGCAAGACCACCACCAGCAGCATGCTGGCCTGGGTGCTGGAGCACGCCGGCATGAGCCCGGGCTTCCTGATTGGCGGCGTGCCGCAGAACTTCTCGGCGTCGGCCCGCTTGGGCGACACGCCGTTCTTTGTGGTGGAAGCCGACGAGTACGACAGCGCCTTCTTCGACAAGCGCTCGAAGTTCGTCCACTATCACCCGCGTACCGCGATCCTCAACAACCTTGAGTTCGATCACGCGGACATCTTCCCGGACCTGGCCTCGATC  >  NC_002947/636084‑636379

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.