New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	675325 =	33 (1.120)	3 (0.110)	3/234	NT	7.9%	coding (377/696 nt)	PP_0577	hypothetical protein
	?	NC_002947	675387 =	39 (1.390)					coding (315/696 nt)	PP_0577	hypothetical protein

GGTACGCACGATGGGCACGCTGGCATAGCCTCCATAACCGTGGCGGTAGCCGCCATAGCCGACACCTCCATAGGGGTACGGCCCGTAGTAGGGGTCGTAGGTGTCGTAGTCACGCACTTGGCGCAAGCGTTTTTCCAGGCGCATATCGGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTGGGCAACTGGCCGTTGCGCCAGCTCCAGCTGCGGTAG  >  NC_002947/675177‑675474                                                                                                                                                     |                                                                                                                                                       ccaggcggccaccaccttcgacgccagtgcttaccctgcgcccgctcgtgattatgggcactaccgcagctggagctggcgcaacggccagttgcccagcggcactgtcgatgccgacccggcgcaactggccgatgccgtcagcggtgc                                                                                                                                                       <  2:11985‑M1/2‑1 (MQ=255)      gCACGATGGGCACGCTGGCATAGCCTCCATAACCGTGGCGGTAGCCGNCATAGCCGACACCTCCATAGGGGTACGGCCCGTAGTAGGGGTCGTAGGTGTCGTAGTCACGCACTTGGCGCAAGCGTTTTTCCAGGCGCATATCGACGCTCa                                                                                                                                                  >  1:364552/1‑150 (MQ=255)      gCACGATGGGCACGCTGGCATAGCCTCCATAACCGTGGCGGTAGCCGCCATAGCCGACACCTCCATAGGGGTACGGCCCGTAGTAGGGGTCGTAGGTGTCGTAGTCACGCACTTGGCGCAAGCGTTTTTCCAGGCGCATATCGGCGCTCa                                                                                                                                                  >  1:793313/1‑150 (MQ=255)         cGATGGGCACGCTGGCATAGCCTCCATAACCGTGGCGGTAGCCGCCATAGCCGACACCTCCATAGGGGTACGGCCCGTAGTAGGGGTCGTAGGTGTCGTAGTCACGCACTTGGCGCAAGCGTTTTTCCAGGCGCATATCGGCGCTCACCa                                                                                                                                               <  2:538018/150‑1 (MQ=255)             caccttcgacgccagtgcttaccctgcgcccgctcgtgattatgggcactaccgcagctggagctggcgcaacggccagttgcccagcggcactgtcgatgccgacccggcgcaactggccgatgccgtcagcggtgcgc                                                                                                                                                     >  2:33480‑M1/137‑140 (MQ=255)             caccttcgacgccagtgcttaccctgcgcccgctcgtgattatgggcactaccgcagctggagctggcgcaacggccagttgcccagcggcactgtcgatgccgacccggcgcaactggccgatgccgtcagcggtgcgc                                                                                                                                                     <  1:33480‑M1/4‑1 (MQ=255)                     tGGCATAGCCTCCATAACCGTGGCGGTAGCCGCCATAGCCGACACCTGGATAGGGGTACGGCCCGTAGTAGGGGTCGTAGGTGTCGTAGTCACGCACTTGGCGCAAGCGTTTTTCCAGGCGCATATCGGCGCTCACCAGCAAGTCGCCAg                                                                                                                                   >  1:781996/1‑150 (MQ=255)                                        gTGGCGGTAGCCGCCATAGCCGACACCTCCATAGGGGTACGGCCCGTAGTAGGGGTCGTAGGTGTCGTAGTCACGCACTTGGCGCAAGCGTTTTTCCAGGCGCATATCGGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGgcg                                                                                                                >  2:254111/1‑150 (MQ=255)                                                 tgatcatgggcactaccgcagctggagctggcgcaacggccagttgcccagcggcactgtcgatgccgacccggcgcaactggccgatgccgtcagcggtGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATg                                                                                                      <  2:396211‑M1/50‑1 (MQ=255)                                                     ccATAGCCGACACCTCCATAGGGGTACGGCCCGTAGTAGGGGTCGTAGGTGTCGTAGTCACGCACTTGGCGCAAGCGTTTTTCCAGGCGCATATCGGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTgg                                                                                                  <  2:480146/150‑1 (MQ=255)                                                         ggcactaccgcagctggagctggcgcaacggccagttgcccagcggcactgtcgatgccgacccggcgcaactggccgatgccgtcagcggtGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGa                                                                                              >  1:396211‑M1/93‑150 (MQ=255)                                                          gcactaccgcagctggagctggcgcaacggccagttgcccagcggcactgtcgatgccgacccggcgcaactggccgatgccgtcagcggtGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAg                                                                                             >  1:466147‑M1/92‑150 (MQ=255)                                                                          gggTACGGCCCGTAGTAGGGGTCGTAGGTGTCGTAGTCACGCACTTGGCGCAAGCGTTTTTCCAGGCGCATATCGGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCa                                                                             >  2:159452/1‑150 (MQ=255)                                                                             tACGGCCCGTAGTAGGGGTCGTAGGTGTCGTAGTCACGCACTTGGCGCAAGCGTTTTTCCAGGCGCATATCGGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCg                                                                          >  1:568685/1‑150 (MQ=255)                                                                             tACGGCCCGTAGTAGGGGTCGTAGGTGTCGTAGTCACGCACTTGGCGCAAGCGTTTTTCCAGGCGCATATCGGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCg                                                                          <  2:781996/150‑1 (MQ=255)                                                                                  cccGTAGTAGGGGTCGTAGGTGTCGTAGTCACGCACTTGGCTCAAGCGTTCTTCCGGGCGCATATCGGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCGGCCAg                                                                     <  2:543563/150‑1 (MQ=255)                                                                                    cGTAGTAGGGGTCGTAGGTGTCGTAGTCACGCACTTGGCGCAAGCGTTTTTCCAGGCGCATATCGGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCGGCCAGtt                                                                   >  2:248604/1‑150 (MQ=255)                                                                                                   aGGTGTCGTAGTCACGCACTTGGCGCAAGCGTTTTTCCAGGCGCATATCGGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCAt                                                    >  1:628754/1‑150 (MQ=255)                                                                                                       gtCGTAGTCACGCACTTGGCGCAAGCGTTTTTCCAGGCGCATATCGGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGGACCAT‑CAGTCCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGAc                                                <  2:793313/150‑1 (MQ=255)                                                                                                              tCACGCACTTGGCGCAAGCGTTTTTCCAGGCGCATATCGGCGCTCACCAGCaa                                                                                                                                           >  2:533781/1‑53 (MQ=255)                                                                                                              tCACGCACTTGGCGCAAGCGTTTTTCCAGGCGCATATCGGCGCTCACCAGCaa                                                                                                                                           <  1:533781/53‑1 (MQ=255)                                                                                                                aCGCACTTGGCGCAAGCGTTTTTCCAGGCGCATATCGGCGCTCACCAGCAAGTCGCCAGGGCCTgc                                                                                                                            >  1:600044/1‑66 (MQ=255)                                                                                                                aCGCACTTGGCGCAAGCGTTTTTCCAGGCGCATATCGGCGCTCACCAGCAAGTCGCCAGGGCCTgc                                                                                                                            <  2:600044/66‑1 (MQ=255)                                                                                                                aCGCACTTGGCGCAAGCGTTTTTCCAGGCGCATATCGGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCt                                       >  1:198349/1‑150 (MQ=255)                                                                                                                aCGCACTTGGCGCAAGCGTTTTTCCAGGCGCATATCGGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCt                                       >  1:657459/1‑150 (MQ=255)                                                                                                                  gCACTTGGCGCAAGCGTTTTTCCAGGCGCATATCGGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTgg                                     <  1:254111/150‑1 (MQ=255)                                                                                                                  ccACTTGGCGCAAGCGTTTTTCCAGGCGCATATCGGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTAGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTgg                                     <  2:292201/149‑1 (MQ=255)                                                                                                                            cAAGCGTTTTTCCAGGCGCATATCGGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑TCATGCTGGTCGAGTGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCAGCGACAGTGCCGTTTTGCAACTGGcc                           <  2:196565/150‑1 (MQ=255)                                                                                                                             aaGCGTTTTTCCAGGCGCATATCGGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTGGGCAACTGGCCg                          >  2:104750/1‑150 (MQ=255)                                                                                                                                 gTTTTTCCAGGCGCATATCGGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGc                                                                              <  1:573255/94‑1 (MQ=255)                                                                                                                                 gTTTTTCCAGGCGCATATCGGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGc                                                                              >  2:573255/1‑94 (MQ=255)                                                                                                                                   ttttCCCGCCACATATCGGCGGCGACGATCAAGTCGCGAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTGGGCAACTGGCCGTTgcgc                    <  2:568685/150‑1 (MQ=255)                                                                                                                                    tttCCAGGCGCATATCGGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTGGGCAACTGGCCGTTGCGcc                   >  2:112399/1‑150 (MQ=255)                                                                                                                                         aGGCGCATATCGGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTGGGCAACTGGCCGTTGCGccagctc              >  1:584363/1‑150 (MQ=255)                                                                                                                                         aGGCGCATATCGGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTGGCCAACTGGCCGTTGCGccagcgc              >  2:750343/1‑148 (MQ=255)                                                                                                                                           gcgcATATCGGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTGGGCAACTGGCCGTTgcgc                    >  1:614160/1‑142 (MQ=255)                                                                                                                                           gcgcATATCGGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTGGGCAACTGGCCGTTgcgc                    <  2:614160/142‑1 (MQ=255)                                                                                                                                             gcATATCGGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTGGGCAACTGGCCGTTGCGccagctccagc          >  1:322301/1‑150 (MQ=255)                                                                                                                                             gcATATCGGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTGGGCAAATGGCCGTTGCGccagctccagc          >  1:39536/1‑150 (MQ=255)                                                                                                                                                  tCGGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTGGGCAACTGGCCGTTGCGCCAGCTCCAGCTGCgg     <  1:159452/150‑1 (MQ=255)                                                                                                                                                     GCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTGGGCAACTGGCCGTTGCGCCAGCTCCAGCTGCGGTAg  <  1:383502‑M1/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                       GGTACGCACGATGGGCACGCTGGCATAGCCTCCATAACCGTGGCGGTAGCCGCCATAGCCGACACCTCCATAGGGGTACGGCCCGTAGTAGGGGTCGTAGGTGTCGTAGTCACGCACTTGGCGCAAGCGTTTTTCCAGGCGCATATCGGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTGGGCAACTGGCCGTTGCGCCAGCTCCAGCTGCGGTAG  >  NC_002947/675177‑675474

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.