New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	675325 =	33 (1.120)	3 (0.110)	3/234	NT	7.9%	coding (377/696 nt)	PP_0577	hypothetical protein
	?	NC_002947	675387 =	39 (1.390)					coding (315/696 nt)	PP_0577	hypothetical protein

GGGTACGGCCCGTAGTAGGGGTCGTAGGTGTCGTAGTCACGCACTTGGCGCAAGCGTTTTTCCAGGCGCATATCGGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTGGGCAACTGGCCGTTGCGCCAGCTCCAGCTGCGGTAGTGCCCATAATCACGAGCGGGCGCAGGGTAAGCACTGGCGTCGAAGGTGGTGGCCGCCTGG  >  NC_002947/675250‑675534                                                                                                                                           |                                                                                                                                                    gggTACGGCCCGTAGTAGGGGTCGTAGGTGTCGTAGTCACGCACTTGGCGCAAGCGTTTTTCCAGGCGCATATCGGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCa                                                                                                                                         >  2:159452/1‑150 (MQ=255)    tACGGCCCGTAGTAGGGGTCGTAGGTGTCGTAGTCACGCACTTGGCGCAAGCGTTTTTCCAGGCGCATATCGGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCg                                                                                                                                      <  2:781996/150‑1 (MQ=255)    tACGGCCCGTAGTAGGGGTCGTAGGTGTCGTAGTCACGCACTTGGCGCAAGCGTTTTTCCAGGCGCATATCGGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCg                                                                                                                                      >  1:568685/1‑150 (MQ=255)         cccGTAGTAGGGGTCGTAGGTGTCGTAGTCACGCACTTGGCTCAAGCGTTCTTCCGGGCGCATATCGGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCGGCCAg                                                                                                                                 <  2:543563/150‑1 (MQ=255)           cGTAGTAGGGGTCGTAGGTGTCGTAGTCACGCACTTGGCGCAAGCGTTTTTCCAGGCGCATATCGGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCGGCCAGtt                                                                                                                               >  2:248604/1‑150 (MQ=255)                          aGGTGTCGTAGTCACGCACTTGGCGCAAGCGTTTTTCCAGGCGCATATCGGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCAt                                                                                                                >  1:628754/1‑150 (MQ=255)                              gtCGTAGTCACGCACTTGGCGCAAGCGTTTTTCCAGGCGCATATCGGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGGACCAT‑CAGTCCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGAc                                                                                                            <  2:793313/150‑1 (MQ=255)                                       aCGCACTTGGCGCAAGCGTTTTTCCAGGCGCATATCGGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCt                                                                                                   >  1:198349/1‑150 (MQ=255)                                       aCGCACTTGGCGCAAGCGTTTTTCCAGGCGCATATCGGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCt                                                                                                   >  1:657459/1‑150 (MQ=255)                                         gCACTTGGCGCAAGCGTTTTTCCAGGCGCATATCGGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTgg                                                                                                 <  1:254111/150‑1 (MQ=255)                                         ccACTTGGCGCAAGCGTTTTTCCAGGCGCATATCGGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTAGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTgg                                                                                                 <  2:292201/149‑1 (MQ=255)                                                   cAAGCGTTTTTCCAGGCGCATATCGGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑TCATGCTGGTCGAGTGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCAGCGACAGTGCCGTTTTGCAACTGGcc                                                                                       <  2:196565/150‑1 (MQ=255)                                                    aaGCGTTTTTCCAGGCGCATATCGGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTGGGCAACTGGCCg                                                                                      >  2:104750/1‑150 (MQ=255)                                                        gTTTTTCCAGGCGCATATCGGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGc                                                                                                                                          <  1:573255/94‑1 (MQ=255)                                                        gTTTTTCCAGGCGCATATCGGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGc                                                                                                                                          >  2:573255/1‑94 (MQ=255)                                                          ttttCCCGCCACATATCGGCGGCGACGATCAAGTCGCGAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTGGGCAACTGGCCGTTgcgc                                                                                <  2:568685/150‑1 (MQ=255)                                                           tttCCAGGCGCATATCGGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTGGGCAACTGGCCGTTGCGcc                                                                               >  2:112399/1‑150 (MQ=255)                                                                aGGCGCATATCGGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTGGGCAACTGGCCGTTGCGccagctc                                                                          >  1:584363/1‑150 (MQ=255)                                                                aGGCGCATATCGGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTGGCCAACTGGCCGTTGCGccagcgc                                                                          >  2:750343/1‑148 (MQ=255)                                                                  gcgcATATCGGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTGGGCAACTGGCCGTTgcgc                                                                                >  1:614160/1‑142 (MQ=255)                                                                  gcgcATATCGGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTGGGCAACTGGCCGTTgcgc                                                                                <  2:614160/142‑1 (MQ=255)                                                                    gcATATCGGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTGGGCAACTGGCCGTTGCGccagctccagc                                                                      >  1:322301/1‑150 (MQ=255)                                                                    gcATATCGGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTGGGCAAATGGCCGTTGCGccagctccagc                                                                      >  1:39536/1‑150 (MQ=255)                                                                         tCGGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTGGGCAACTGGCCGTTGCGCCAGCTCCAGCTGCgg                                                                 <  1:159452/150‑1 (MQ=255)                                                                            GCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTGGGCAACTGGCCGTTGCGCCAGCTCCAGCTGCGGTAg                                                              <  1:383502‑M1/150‑1 (MQ=255)                                                                             CGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTGGGCAACTGGCCGTTGCGCCAGCTCCAGCTGCGGTAGt                                                             >  2:657459‑M1/1‑150 (MQ=255)                                                                               CTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTGGGCAACTGGCCGTTGCGCCAGCTCCAGCTGCGGTAGTGc                                                           >  1:248604‑M1/1‑150 (MQ=255)                                                                                ctcgaccagcatggcctgcgcccctctcgcgcaggccctggcgacttgctggtgagcgcACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTGGGCAACTGGCCGTTGCGCCAGCTCCAGCTGCGGTAGTGc                                                           >  1:466147‑M2/60‑150 (MQ=255)                                                                                 tcgaccagcatggcctgcgcccctctcgcgcaggccctggcgacttgctggtgagcgcACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTGGGCAACTGGCCGTTGCGCCAGCTCCAGCTGCGGTAGTGcc                                                          >  1:396211‑M2/59‑150 (MQ=255)                                                                                   ccAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTGGGCAACTGGCCGTTGCGCCAGCTCCAGCTGCGGTAGTGCCCAt                                                       >  1:514821/1‑150 (MQ=255)                                                                                    cAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCg                                                                                                                                      <  2:142983/70‑1 (MQ=255)                                                                                    cAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCg                                                                                                                                      >  1:142983/1‑70 (MQ=255)                                                                                        aaGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTGGGCAACTGGCCGTTGCGCCAGCTCCAGCTGCGGTAGTGCCCATAATCa                                                  <  2:584363/150‑1 (MQ=255)                                                                                        aaGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTGGGCAACTGGCCGTTGCGCCAGCTCCAGCTGCGGTAGTGCCCATAATCa                                                  <  2:198349/150‑1 (MQ=255)                                                                                         catggcctgcgcccctctcgcgcaggccctggcgacttgctggtgagcgcACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTGGGCAACTGGCCGTTGCGCCAGCTCCAGCTGCGGTAGTGCCCATGATCa                                                  <  2:396211‑M2/100‑1 (MQ=255)                                                                                           tCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTGGGCAACTGGCCGTTGCGCCAGCTCCAGCTGCGGTAGTGCCCATAATCACGa                                               >  1:114688/1‑150 (MQ=255)                                                                                              ccAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTGGGCAACTGGCCGTTGCGCCAGCTCCAGCTGCGGTAGTGCCCATAATCACGAGCg                                            <  2:322301/150‑1 (MQ=255)                                                                                               cagacccTGCGCTAAAGGGGCTCAGG‑CCATGTTGGTCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTGGGCATCTGGCCGTTGCGCCAGCTCCAGCTGCGGTAGTGCCCATAATCACGAGCgg                                           <  2:310222/145‑1 (MQ=255)                                                                                               cAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTGGGCAACTGGCCGTTGCGCCAGCTCCAGCTGCGGTAGTGCCCATAATCACGAGCgg                                           >  1:352326/1‑150 (MQ=255)                                                                                                      tGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTGGGCAAATGGCTGTTTCACCAGGGCCAGCTTCGGTAGTGCCCATAATCACGAGCGGGCGCAgg                                    >  1:776322/1‑150 (MQ=255)                                                                                                             gagGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTGGGCAACTGGCCGTTGCGCCAGCTCCAGCTGCGGTAGTGCCCATAATCACGAGCGGGCGCAGGGTAAGCa                             >  1:408354/1‑150 (MQ=255)                                                                                                                gggCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTGGGCAACTGGCCGTTGCGCCAGCTCCAGCTGCGGTAGTGCCCATAATCACGAGCGGGCGCAGGGTAAGCACTg                          >  1:11985/1‑150 (MQ=255)                                                                                                                             tGCTGGTCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTGGGCAACTGGCCGTTGCGCCAGCTCCAGCTGCGGTAGTGCCCATAATCACGAGCGGGCGCAGGGTAAGCACTGGCGTCGAAggtg              <  2:514821/150‑1 (MQ=255)                                                                                                                              gCTGGTCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTGGGCAACTGGCCGTTGCGCCAGCTCCAGCTGCGGTAGTGCCCATAATCACGAGCgg                                           <  1:155953/120‑1 (MQ=255)                                                                                                                              gCTGGTCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTGGGCAACTGGCCGTTGCGCCAGCTCCAGCTGCGGTAGTGCCCATAATCACGAGCgg                                           >  2:155953/1‑120 (MQ=255)                                                                                                                                tggtggAGCTCTCTGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCAGCGACAGTGCCGCTGGGCAACTGGCCGTTGCGCCAGCTCCAGCTGCGGTAGTGCCCATAATCACGAGCGGGCGCAGGGTAAGCACTGGCGTCGAAGgtggtg           <  2:246766/150‑1 (MQ=255)                                                                                                                                tGGTCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTGGGCAACTGGCCGTTGCGCCAGCTCCAGCTGCGGTAGTGCCCATAATCACGAGCGGGCGCAGGGTAAGCACTGGCGTCGAAg                 <  2:274372/144‑1 (MQ=255)                                                                                                                                tGGTCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTGGGCAACTGGCCGTTGCGCCAGCTCCAGCTGCGGTAGTGCCCATAATCACGAGCGGGCGCAGGGTAAGCACTGGCGTCGAAg                 >  1:274372/1‑144 (MQ=255)                                                                                                                                tGGTCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTGGGCAACTGGCCGTTGCAGTTGCTCCAGCTGCGGTAGTGCCCATAATCACGAGCGGGCGCAGGGTAAGCACTGGCGTCGAAGgtggtg           >  1:336730/1‑150 (MQ=255)                                                                                                                                   tCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTGGGCAACTGGCCGTTGCGCCAGCTCCAGCTGCGGTAGTGCCCATAATCACGAGCGGGCGCAGGGTAAGCACTGGCGTCGAAGGTGGTGgcc        <  2:352326/150‑1 (MQ=255)                                                                                                                                       gcgcACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTGGGCAACTGGCCGTTGCGCCAGCTCCAGCTGCGGTAGTGCCCATAATCACGAGCGGGCGCAGGGTAAGCACTGGCGTCGAAggtg              >  2:33480‑M2/5‑140 (MQ=255)                                                                                                                                       gcgcACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTGGGCAACTGGCCGTTGCGCCAGCTCCAGCTGCGGTAGTGCCCATAATCACGAGCGGGCGCAGGGTAAGCACTGGCGTCGAAggtg              <  1:33480‑M2/136‑1 (MQ=255)                                                                                                                                         gcACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTGGGCAACTGGCCGTTGCGCCAGCTCCAGCTGCGGTAGTGCCCATAATCACGAGCGGGCGCAGGGTAAGCACTGGCGTCGAAGGTGGTGGCCGCCTgg  <  2:11985‑M2/148‑1 (MQ=255)                                                                                                                                           |                                                                                                                                                    GGGTACGGCCCGTAGTAGGGGTCGTAGGTGTCGTAGTCACGCACTTGGCGCAAGCGTTTTTCCAGGCGCATATCGGCGCTCACCAGCAAGTCGCCAGGGCCTGCGCGAGAGGGGCGCAGG‑CCATGCTGGTCGAGCGCACCGCTGACGGCATCGGCCAGTTGCGCCGGGTCGGCATCGACAGTGCCGCTGGGCAACTGGCCGTTGCGCCAGCTCCAGCTGCGGTAGTGCCCATAATCACGAGCGGGCGCAGGGTAAGCACTGGCGTCGAAGGTGGTGGCCGCCTGG  >  NC_002947/675250‑675534

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.