New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	846685 =	21 (0.710)	4 (0.140)	4/238	NT	15.6%	coding (518/1191 nt)	PP_0729	hypothetical protein
	?	NC_002947	846705 =	23 (0.800)					coding (498/1191 nt)	PP_0729	hypothetical protein

ACGGGGCCCATCTGCGGTCATGGGACGTACTTGGAATAGCAGAGGGCCATCGACAGTGATCGCGAACTCTATGTCCAAGGCATCGCGCCCGGTTAGAACTTGTACCTCTTCGAGCAAAGCAAACAACCCTGGTAATTCCGCAGGCTCGCTTGCCGCTTCGCTGCCAAGGGAGACGAAAGCATGCACAGTCTCGTTGCCGGTAGTGACACCGTCAGTACTGGCACCTGGTACATAGTCAACTACGTAATATGGCAAACCCGTCTCTGGATCACGGGTCATCGCCACTCCGC  >  NC_002947/846537‑846826                                                                                                                                                     |                                                                                                                                              gcagatggcgagaggagtattggccagcggagtggcgatgacccgtgatccagagacgggtttgccatattacgtagttgactatgtaccaggtgccagtactgacggtgtaacgaccggcaacgagactgtgcatgctttcgtctccCt                                                                                                                                              <  1:243526‑M1/2‑1 (MQ=255)        ccATCTGCGGTCATGGGACGTACTTGGAATAGCAGAGGGCCATCGACAGTGATCGCGAACTCTATGTCCAAGGCATCGCGCCCGGTTAGAACTTGTACCTCTTCGAGCAAAGCAAACAACCCTGGTAATTCCGCAGGCTCGCTTGCCGCt                                                                                                                                       >  1:546211/1‑150 (MQ=255)                  tCATGGGACGTACTTGGAATAGCAGAGGGCCATAGATCGTCGCATAGTGGGCATCGACCAAGGCATCGTGTTGGTTGAGAACTTGTACCTCTTCGAGCAAAGCAAACAACCCTGGTAATTCCGCAGGCTCGCTTGCCGCTTCGCTGCCaa                                                                                                                             >  1:413513/1‑150 (MQ=255)                                      aGCAGAGGGCCATCGACAGTGATCGCGAACTCTATGTCCAAGGCATCGCGCCCGGTTAGAACTTGTACCTCTTCGAGCAAAGCAAACAACCCTGGTAATTCCGCAGGCTCGCTTGCCGCTTCGCTGCCAAGGGAGACGAAAGCATGcaca                                                                                                         <  2:694384/150‑1 (MQ=255)                                                       aGTGATCGCGAACTCTATGTCCAAGGCATCGCGCCCGGTTAGAACTTGTACCTCTTCGAGCAAAGCAAACAACCCTGGTAATTCCGCAGGCTCGCTTGCCGCTTCGCTGCCAAGGGAGACGAAAGCATGCACAGTCTCGTTGCCGGTAGt                                                                                        <  2:491867/150‑1 (MQ=255)                                                            tCGCGAACTCTATGTCCAAGGCATCGCGCCCGGTTAGAACTTGTACCTCTTCGAGCAAAGCAAACAACCCTGGTAATTCCGCAGGCTCGCTTGCCGCTTCGCTGCCAAGGGAGACGAAAGCATGCACAGTCTCGTTGCCGGTAGTGacac                                                                                   >  2:311179/1‑150 (MQ=255)                                                               cgAACTCTATGTCCAAGGCATCGCGCCCGGTTAGAACTTGTACCTCTTCGAGCAAAGCAAACAACCCCGGTAATTCCGCAGGCTCGCTTGCCGCTTCGCTGCCAAGGGAGACGAAAGCATGCACAGTCTCGTTGCCGGTAGTGACACCGt                                                                                <  1:9089/150‑1 (MQ=255)                                                                 aaCTCTATGTCCAAGGCATCGCGCCCGGTTAGAACTTGTACCTCTTCGAGCAAAGCAAACAACCCTGGTAATTCCGCAGGCTCGCTTGCCGCTTCGCTGCCAAg                                                                                                                            >  2:224218/1‑104 (MQ=255)                                                                 aaCTCTATGTCCAAGGCATCGCGCCCGGTTAGAACTTGTACCTCTTCGAGCAAAGCAAACAACCCTGGTAATTCCGCAGGCTCGCTTGCCGCTTCGCTGCCAAg                                                                                                                            <  1:224218/104‑1 (MQ=255)                                                                        tGTCCAAGGCATCGCGCCCGGTTAGAACTTGTACCTCTTCGAGCAAAGCAAACGACCCTGGTAATTCCGCAGGCTCGCTTGCCGCTTCGCTGCCAAGGGAGACGAAAGCGTGCACAGTCTCGTTGCCGGTAGTGACACCGTCAGTACTgg                                                                       <  1:761432/150‑1 (MQ=255)                                                                            cAAGGCATCGCGCCCGGTTAGAACTTGTACCTCTTCGAGCAAAGCAAACAACCCTGGTAATTCCGCAGGCTCGCTTGCCGCTTCGCTGCCAAGGGAGACGAAAGCATGCACAGTCTCGCTGCCGGTAGTGACACCGTCAGTACTGGCAcc                                                                   >  2:243526/1‑150 (MQ=255)                                                                             aaGGCATCGCGCCCGGTTAGAACTTGTACCTCTTCGAGCAAAGCAAACAACCCTGGTAATTCCGCAGGCTCGCtt                                                                                                                                             <  2:259246/75‑1 (MQ=255)                                                                             aaGGCATCGCGCCCGGTTAGAACTTGTACCTCTTCGAGCAAAGCAAACAACCCTGGTAATTCCGCAGGCTCGCtt                                                                                                                                             >  1:259246/1‑75 (MQ=255)                                                                                gactatgtaccaggtgccagtactgacggtgtcactaccggcaacgagactgtgcatgctttcgtctccCTTGCCGCTTCGCTGCCAAGGgaga                                                                                                                       <  1:342087‑M1/25‑1 (MQ=255)                                                                                gactatgtaccaggtgccagtactgacggtgtcactaccggcaacgagactgtgcatgctttcgtctccCTTGCCGCTTCGCTGCCAAGGgaga                                                                                                                       >  2:342087‑M1/70‑94 (MQ=255)                                                                                         ccaggtgccagtactgacggtgtcactaccggcaacgagactgtgcatgctttcgtctccCTTGCCGCTTCGCTGCCAAGGGAGACGAAAGCAt                                                                                                              <  1:323859‑M1/34‑1 (MQ=255)                                                                                         ccaggtgccagtactgacggtgtcactaccggcaacgagactgtgcatgctttcgtctccCTTGCCGCTTCGCTGCCAAGGGAGACGAAAGCAt                                                                                                              >  2:323859‑M1/61‑94 (MQ=255)                                                                                                             ttCGAGCAAAGCAAACAACCCTGGTAATTCCGCAGGCTCGCTTGCCGCTTCGCTGCCAAGGGAGACGAAAGCATGCACAGTCTCGTTGCCGGTAGTGACACCGTCAGTACTGGCACCTGGTACATAGTCAACTACGTAATATGGc                                       <  1:25789/145‑1 (MQ=255)                                                                                                             ttCGAGCAAAGCAAACAACCCTGGTAATTCCGCAGGCTCGCTTGCCGCTTCGCTGCCAAGGGAGACGAAAGCATGCACAGTCTCGTTGCCGGTAGTGACACCGTCAGTACTGGCACCTGGTACATAGTCAACTACGTAATATGGc                                       >  2:25789/1‑145 (MQ=255)                                                                                                              tCGAGCAAAGCAAACAACCCTGGTAATTCCGCAGGCTCGCTTGCCGCTTCGCTGCCAAGGGAGACGAAAGCATGCACAGTCTCGTTGCCGGTAGTGACACCGTCAGTACTGGCACCTGGTACATAGTCAACTACGTAATATGGCAAAccc                                 <  2:413513/150‑1 (MQ=255)                                                                                                                gAGCAAAGCAAACAACCCTGGTAATTCCGCAGGCTCGCTTGCCGCTTCGCTGCCAAGGGAGACGAAAGCATGCACAGTCTCGTTGCCGGTAGTGACACCGTCAGTACTGGCACCTGGTACATAGTCAACTACGTAATATGGCAAACCCGt                               <  1:650058/150‑1 (MQ=255)                                                                                                                   caaagcaaaCAACCCTGGTAATTCCGCAGGCTCGCTTGCCGCTTCGCTGCCAAGGGAGACGAAAGCATGCACAGTCTCGTTGCCGGTAGTGACACCGTCAGTACTGGCACCTGGTACATAGTCAACTACGTAATATGGCAAACCCGtctc                            <  1:311179/150‑1 (MQ=255)                                                                                                                     aagcaaaCAACCCTGGTAATTCCGCAGGCTCGCTTGCCGCTTCGCTGCCAAGGGAGACGAAAGCATGCACAGTCTCGTTGCCGGTAGTGACACCGTCAGTACTGGCACCTGGTACATAGTCAACTACGTAATATGGCAAACCCGTCTCTg                          >  2:599913/1‑150 (MQ=255)                                                                                                                               cccTGGTAATTCCGCAGGCTCGCTTGCCGCTTCGCTGCCAAGGGAGACGAAAGCATGCACAGTCTCGTTGCCGGTAGTGACACCGTCAGTACTGGCACCTGGTACATAGTCAACTACGTAATATGGCAAACCCGTCTCTGGATCACgggc                <  2:546211/150‑2 (MQ=255)                                                                                                                                ccTGGTAATTCCGCAGGCTCGCTTGCCGCTTCGCTGCCAAGGGAGACGAAAGCATGCACAGTCTCGTTGCCGGTAGTGACACCGTCAGTACTGGCACCTGGTACATAGTCAACTACGTAATATGGCAAACCCGTCTCTg                          <  2:780668/139‑1 (MQ=255)                                                                                                                                ccTGGTAATTCCGCAGGCTCGCTTGCCGCTTCGCTGCCAAGGGAGACGAAAGCATGCACAGTCTCGTTGCCGGTAGTGACACCGTCAGTACTGGCACCTGGTACATAGTCAACTACGTAATATGGCAAACCCGTCTCTg                          >  1:780668/1‑139 (MQ=255)                                                                                                                                ccTGGTAATTCCGCAGGCTCGCTTGCCGCTTCGCTGCCAAGGGAGACGAAAGCATGCACAGTCTCGTTGCCGGTAGTGACACCGTCAGTACTGGCACCTGGTACATAGTCAACTACGTAATATGCCAAACCCGTCTCTGGATCACGGGTc               >  2:498383/1‑150 (MQ=255)                                                                                                                                             cAGGCTCGCTTGCCGCTTCGCTGCCAAGGGAGACGAAAGCATGCACAGTCTCGTTGCCGGTAGTGACACCGTCAGTACTGGCACCTGGTACATAGTCAACTACGTACTATGGCAAACCCGTCTCTGGAGCACGGGTCATCGCCACTCCGc  <  1:498383/150‑1 (MQ=255)                                                                                                                                                    gCTTGCCGCTTCGCTGCCAAGGGAGACGAAAGCATGCACAGTCTCGTTGCCGGTAGTGACACCGTCAGTACTGGCACCTGGTACATAGTCAACTACGTAATATGGCAAACCCGTCTCTg                          <  2:451494/119‑1 (MQ=255)                                                                                                                                                    gCTTGCCGCTTCGCTGCCAAGGGAGACGAAAGCATGCACAGTCTCGTTGCCGGTAGTGACACCGTCAGTACTGGCACCTGGTACATAGTCAACTACGTAATATGGCAAACCCGTCTCTg                          >  1:451494/1‑119 (MQ=255)                                                                                                                                                     |                                                                                                                                              ACGGGGCCCATCTGCGGTCATGGGACGTACTTGGAATAGCAGAGGGCCATCGACAGTGATCGCGAACTCTATGTCCAAGGCATCGCGCCCGGTTAGAACTTGTACCTCTTCGAGCAAAGCAAACAACCCTGGTAATTCCGCAGGCTCGCTTGCCGCTTCGCTGCCAAGGGAGACGAAAGCATGCACAGTCTCGTTGCCGGTAGTGACACCGTCAGTACTGGCACCTGGTACATAGTCAACTACGTAATATGGCAAACCCGTCTCTGGATCACGGGTCATCGCCACTCCGC  >  NC_002947/846537‑846826

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.