New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	846685 =	21 (0.710)	4 (0.140)	4/238	NT	15.6%	coding (518/1191 nt)	PP_0729	hypothetical protein
	?	NC_002947	846705 =	23 (0.800)					coding (498/1191 nt)	PP_0729	hypothetical protein

AGCAGAGGGCCATCGACAGTGATCGCGAACTCTATGTCCAAGGCATCGCGCCCGGTTAGAACTTGTACCTCTTCGAGCAAAGCAAACAACCCTGGTAATTCCGCAGGCTCGCTTGCCGCTTCGCTGCCAAGGGAGACGAAAGCATGCACAGTCTCGTTGCCGGTAGTGACACCGTCAGTACTGGCACCTGGTACATAGTCAACTACGTAATATGGCAAACCCGTCTCTGGATCACGGGTCATCGCCACTCCGCTGGCCAATACTCCTCTCGCCATCTGC  >  NC_002947/846574‑846852                                                                                                                                    |                                                                                                                                                    aGCAGAGGGCCATCGACAGTGATCGCGAACTCTATGTCCAAGGCATCGCGCCCGGTTAGAACTTGTACCTCTTCGAGCAAAGCAAACAACCCTGGTAATTCCGCAGGCTCGCTTGCCGCTTCGCTGCCAAGGGAGACGAAAGCATGcaca                                                                                                                                   <  2:694384/150‑1 (MQ=255)                  aGTGATCGCGAACTCTATGTCCAAGGCATCGCGCCCGGTTAGAACTTGTACCTCTTCGAGCAAAGCAAACAACCCTGGTAATTCCGCAGGCTCGCTTGCCGCTTCGCTGCCAAGGGAGACGAAAGCATGCACAGTCTCGTTGCCGGTAGt                                                                                                                  <  2:491867/150‑1 (MQ=255)                       tCGCGAACTCTATGTCCAAGGCATCGCGCCCGGTTAGAACTTGTACCTCTTCGAGCAAAGCAAACAACCCTGGTAATTCCGCAGGCTCGCTTGCCGCTTCGCTGCCAAGGGAGACGAAAGCATGCACAGTCTCGTTGCCGGTAGTGacac                                                                                                             >  2:311179/1‑150 (MQ=255)                          cgAACTCTATGTCCAAGGCATCGCGCCCGGTTAGAACTTGTACCTCTTCGAGCAAAGCAAACAACCCCGGTAATTCCGCAGGCTCGCTTGCCGCTTCGCTGCCAAGGGAGACGAAAGCATGCACAGTCTCGTTGCCGGTAGTGACACCGt                                                                                                          <  1:9089/150‑1 (MQ=255)                                   tGTCCAAGGCATCGCGCCCGGTTAGAACTTGTACCTCTTCGAGCAAAGCAAACGACCCTGGTAATTCCGCAGGCTCGCTTGCCGCTTCGCTGCCAAGGGAGACGAAAGCGTGCACAGTCTCGTTGCCGGTAGTGACACCGTCAGTACTgg                                                                                                 <  1:761432/150‑1 (MQ=255)                                       cAAGGCATCGCGCCCGGTTAGAACTTGTACCTCTTCGAGCAAAGCAAACAACCCTGGTAATTCCGCAGGCTCGCTTGCCGCTTCGCTGCCAAGGGAGACGAAAGCATGCACAGTCTCGCTGCCGGTAGTGACACCGTCAGTACTGGCAcc                                                                                             >  2:243526/1‑150 (MQ=255)                                           gactatgtaccaggtgccagtactgacggtgtcactaccggcaacgagactgtgcatgctttcgtctccCTTGCCGCTTCGCTGCCAAGGgaga                                                                                                                                                 >  2:342087‑M1/70‑94 (MQ=255)                                           gactatgtaccaggtgccagtactgacggtgtcactaccggcaacgagactgtgcatgctttcgtctccCTTGCCGCTTCGCTGCCAAGGgaga                                                                                                                                                 <  1:342087‑M1/25‑1 (MQ=255)                                                    ccaggtgccagtactgacggtgtcactaccggcaacgagactgtgcatgctttcgtctccCTTGCCGCTTCGCTGCCAAGGGAGACGAAAGCAt                                                                                                                                        <  1:323859‑M1/34‑1 (MQ=255)                                                    ccaggtgccagtactgacggtgtcactaccggcaacgagactgtgcatgctttcgtctccCTTGCCGCTTCGCTGCCAAGGGAGACGAAAGCAt                                                                                                                                        >  2:323859‑M1/61‑94 (MQ=255)                                                                        ttCGAGCAAAGCAAACAACCCTGGTAATTCCGCAGGCTCGCTTGCCGCTTCGCTGCCAAGGGAGACGAAAGCATGCACAGTCTCGTTGCCGGTAGTGACACCGTCAGTACTGGCACCTGGTACATAGTCAACTACGTAATATGGc                                                                 <  1:25789/145‑1 (MQ=255)                                                                        ttCGAGCAAAGCAAACAACCCTGGTAATTCCGCAGGCTCGCTTGCCGCTTCGCTGCCAAGGGAGACGAAAGCATGCACAGTCTCGTTGCCGGTAGTGACACCGTCAGTACTGGCACCTGGTACATAGTCAACTACGTAATATGGc                                                                 >  2:25789/1‑145 (MQ=255)                                                                         tCGAGCAAAGCAAACAACCCTGGTAATTCCGCAGGCTCGCTTGCCGCTTCGCTGCCAAGGGAGACGAAAGCATGCACAGTCTCGTTGCCGGTAGTGACACCGTCAGTACTGGCACCTGGTACATAGTCAACTACGTAATATGGCAAAccc                                                           <  2:413513/150‑1 (MQ=255)                                                                           gAGCAAAGCAAACAACCCTGGTAATTCCGCAGGCTCGCTTGCCGCTTCGCTGCCAAGGGAGACGAAAGCATGCACAGTCTCGTTGCCGGTAGTGACACCGTCAGTACTGGCACCTGGTACATAGTCAACTACGTAATATGGCAAACCCGt                                                         <  1:650058/150‑1 (MQ=255)                                                                              caaagcaaaCAACCCTGGTAATTCCGCAGGCTCGCTTGCCGCTTCGCTGCCAAGGGAGACGAAAGCATGCACAGTCTCGTTGCCGGTAGTGACACCGTCAGTACTGGCACCTGGTACATAGTCAACTACGTAATATGGCAAACCCGtctc                                                      <  1:311179/150‑1 (MQ=255)                                                                                aagcaaaCAACCCTGGTAATTCCGCAGGCTCGCTTGCCGCTTCGCTGCCAAGGGAGACGAAAGCATGCACAGTCTCGTTGCCGGTAGTGACACCGTCAGTACTGGCACCTGGTACATAGTCAACTACGTAATATGGCAAACCCGTCTCTg                                                    >  2:599913/1‑150 (MQ=255)                                                                                          cccTGGTAATTCCGCAGGCTCGCTTGCCGCTTCGCTGCCAAGGGAGACGAAAGCATGCACAGTCTCGTTGCCGGTAGTGACACCGTCAGTACTGGCACCTGGTACATAGTCAACTACGTAATATGGCAAACCCGTCTCTGGATCACgggc                                          <  2:546211/150‑2 (MQ=255)                                                                                           ccTGGTAATTCCGCAGGCTCGCTTGCCGCTTCGCTGCCAAGGGAGACGAAAGCATGCACAGTCTCGTTGCCGGTAGTGACACCGTCAGTACTGGCACCTGGTACATAGTCAACTACGTAATATGGCAAACCCGTCTCTg                                                    >  1:780668/1‑139 (MQ=255)                                                                                           ccTGGTAATTCCGCAGGCTCGCTTGCCGCTTCGCTGCCAAGGGAGACGAAAGCATGCACAGTCTCGTTGCCGGTAGTGACACCGTCAGTACTGGCACCTGGTACATAGTCAACTACGTAATATGGCAAACCCGTCTCTg                                                    <  2:780668/139‑1 (MQ=255)                                                                                           ccTGGTAATTCCGCAGGCTCGCTTGCCGCTTCGCTGCCAAGGGAGACGAAAGCATGCACAGTCTCGTTGCCGGTAGTGACACCGTCAGTACTGGCACCTGGTACATAGTCAACTACGTAATATGCCAAACCCGTCTCTGGATCACGGGTc                                         >  2:498383/1‑150 (MQ=255)                                                                                                  atgctttcgtctcccttggcagcgaagcggcaagGGAGACGAAAGCATGCACAGTCTCGTTGCCGGTAGTGACACCGTCAGTACTGGCACCTgg                                                                                          >  2:323859‑M2/35‑94 (MQ=255)                                                                                                  atgctttcgtctcccttggcagcgaagcggcaagGGAGACGAAAGCATGCACAGTCTCGTTGCCGGTAGTGACACCGTCAGTACTGGCACCTgg                                                                                          <  1:323859‑M2/60‑1 (MQ=255)                                                                                                        cAGGCTCGCTTGCCGCTTCGCTGCCAAGGGAGACGAAAGCATGCACAGTCTCGTTGCCGGTAGTGACACCGTCAGTACTGGCACCTGGTACATAGTCAACTACGTACTATGGCAAACCCGTCTCTGGAGCACGGGTCATCGCCACTCCGc                            <  1:498383/150‑1 (MQ=255)                                                                                                           tctcccttggcagcgaagcggcaagGGAGACGAAAGCATGCACAGTCTCGTTGCCGGTAGTGACACCGTCAGTACTGGCACCTGGTACATAGTc                                                                                 <  1:342087‑M2/69‑1 (MQ=255)                                                                                                           tctcccttggcagcgaagcggcaagGGAGACGAAAGCATGCACAGTCTCGTTGCCGGTAGTGACACCGTCAGTACTGGCACCTGGTACATAGTc                                                                                 >  2:342087‑M2/26‑94 (MQ=255)                                                                                                               gCTTGCCGCTTCGCTGCCAAGGGAGACGAAAGCATGCACAGTCTCGTTGCCGGTAGTGACACCGTCAGTACTGGCACCTGGTACATAGTCAACTACGTAATATGGCAAACCCGTCTCTg                                                    >  1:451494/1‑119 (MQ=255)                                                                                                               gCTTGCCGCTTCGCTGCCAAGGGAGACGAAAGCATGCACAGTCTCGTTGCCGGTAGTGACACCGTCAGTACTGGCACCTGGTACATAGTCAACTACGTAATATGGCAAACCCGTCTCTg                                                    <  2:451494/119‑1 (MQ=255)                                                                                                                 TTGCCGCTTCGCTGCCAAGGGAGACGAAAGCATGCACAGTCTCGTTGCCGGTAGTGACACCGTCAGTa                                                                                                     >  1:491498‑M1/1‑68 (MQ=255)                                                                                                                 TTGCCGCTTCGCTGCCAAGGGAGACGAAAGCATGCACAGTCTCGTTGCCGGTAGTGACACCGTCAGTa                                                                                                     <  2:491498‑M1/68‑1 (MQ=255)                                                                                                                    ccGCTTCGCTGCCAAGGGAGACGAAAGCATGCACAGTCTCGTTGCCGGTAGTGACACCGTCAGTACTGGCACCTGGTACATAGTCAACTACGTAATATGGCAAACCCGTCTCTGGATCACGGGTCATCGCCACTCCGCTGGCCAATActc                <  2:794906/150‑1 (MQ=255)                                                                                                                       cTTCGCTGCCAAGGGAGACGAAAGCATGCACAGTCTCGTTGCCGGTAGTGACACCGTCAGTACTGGCACCTGGTACATAGTCAACTACGTAACATGGCAAACCCGTCTCTGGATCACGGGTCATCGCCACTCCGCTGGCCACTAcgcctc             >  2:300713/1‑150 (MQ=255)                                                                                                                        ttCGCTGCCAAGGGAGACGAAAGCATGCACAGTCTCGTTGCCGGTAGTGACACCGTCa                                                                                                        >  2:691737/1‑58 (MQ=255)                                                                                                                        ttCGCTGCCAAGGGAGACGAAAGCATGCACAGTCTCGTTGCCGGTAGTGACACCGTCa                                                                                                        <  1:691737/58‑1 (MQ=255)                                                                                                                               ccAAGGGAGACGAAAGCATGCACAGTCTCGTTGCCGGTAGTGACACCGt                                                                                                          <  2:334411/49‑1 (MQ=255)                                                                                                                               ccAAGGGAGACGAAAGCATGCACAGTCTCGTTGCCGGTAGTGACACCGt                                                                                                          >  1:334411/1‑49 (MQ=255)                                                                                                                                  agGGAGACGAAAGCATGCACAGTCTCGTTGCCGGTCGTTACACCGTCAGTACTGGCACCTGGTACATAGTCAACTACGTAATATGGCAAACCCGTCTCTGGATCACGGGTCATCGCCACTCCGCTGGCCAATACTCCTCTCGCCATctgc  <  1:243526‑M2/148‑1 (MQ=255)                                                                                                                                    |                                                                                                                                                    AGCAGAGGGCCATCGACAGTGATCGCGAACTCTATGTCCAAGGCATCGCGCCCGGTTAGAACTTGTACCTCTTCGAGCAAAGCAAACAACCCTGGTAATTCCGCAGGCTCGCTTGCCGCTTCGCTGCCAAGGGAGACGAAAGCATGCACAGTCTCGTTGCCGGTAGTGACACCGTCAGTACTGGCACCTGGTACATAGTCAACTACGTAATATGGCAAACCCGTCTCTGGATCACGGGTCATCGCCACTCCGCTGGCCAATACTCCTCTCGCCATCTGC  >  NC_002947/846574‑846852

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.