New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1241526 =	24 (0.810)	3 (0.110)	7/232	NT	12.6%	intergenic (+12/‑80)	PP_1080/grxD	molybdopterin‑binding oxidoreductase/monothiol glutaredoxin
	?	NC_002947	1241545 =	19 (0.680)					intergenic (+31/‑61)	PP_1080/grxD	molybdopterin‑binding oxidoreductase/monothiol glutaredoxin

CGTCACGGCGTGCACCTGCAGATCGCCCTGGCGCAACCCGGCGTGAGTGCCAATGACCTGACCGATGAGCGCTTTCGGGACCAGGTTTCCGGAAACGCTGCGCTCAATGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCGAGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATGGATATCATCGAAACGATCAAAGAGCAGATTGCCAACAACACCATTCTGCTTTACATGAAAGGCTCGC  >  NC_002947/1241377‑1241675                                                                                                                                                      |                                                                                                                                                      cgtcACGGCGTGCACCTGCAGATCGCCCTGGCGCAACCCGGCGTGAGTGCCAATGACCTGACCGATGAGCGCTTTCGGCACCAGGTTTCCGGAAACGCTGCGCTCAATGGCGTAGCCGTGCAGGTCGACGCCGCTTGAGGAACGGCAAgg                                                                                                                                                       <  2:563501/150‑1 (MQ=255)   tcACGGCGTGCACCTGCAGATCGCCCTGGCGCAACCCGGCGTGAGTGCCAATGACCTGACCGATGAGCGCTTTCGGGACCAGGTTTCCGGAAACGCTGCGCTCAATGGAGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGcc                                                                                                                                                     >  2:412817/1‑150 (MQ=255)              aCCTGCAGATCGCCCTGGCGCAACCCGGCGTGAGTGCCAATGACCTGACCGATGAGCGCTTTCGGGACCAGGTTTCCGGAAACGCTGCGCTCAATGGCGTACCCGTTCCGGTCGAAGCCGCTTGAGGAACGGCAAGGCCGAGCAAGgcgc                                                                                                                                          >  2:5638/1‑150 (MQ=255)              aCCTGCAGATCGCCCTGGCGCAACCCGGCGTGAGTGCCAATGACCTGACCGATGAGCGCTTTCGGGACCAGGTTTCCGGAAACGCTGCGCTCAATGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCGAGCACgg                                                                                                                                             >  2:541825/1‑147 (MQ=255)              aCCTGCAGATCGCCCTGGCGCAACCCGGCGTGAGTGCCAATGACCTGACCGATGAGCGCTTTCGGGACCAGGTTTCCGGAAACGCTGCGCTCAATGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCGAGCACgg                                                                                                                                             <  1:541825/147‑1 (MQ=255)              aCCTGCAGATCGCCCTGGCGCAACCAGGAGTCACTGGTTATGACCTGACTGATTATCGCGTTCGGGACGTGGTTTACACGCACGCCGAAGACGAGGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAGGGCCTGTCACGgcgc                                                                                                                                          >  1:578316/1‑150 (MQ=255)                            cTGGCGCAACCCGGCGTGAGTGCCAATGACCTGACCGATGAGCGCTTTCGGGACCAGGTTTCCGGAAACGCTGCGCTCAATGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCGAGCACGGCGCTCGGCTTTCCGATa                                                                                                                            >  2:482562/1‑150 (MQ=255)                                 gcAACCCGGCGTGAGTGCCAATGACCTGACCGATGAGCGCTTTCGGGACCAGGTTTCCGGAAACGCTGCGCTCAATGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCGAGCACGGCGCTCGGCTTTCCGATACAATg                                                                                                                       >  2:709729/1‑150 (MQ=255)                                    aCCCGGCGTAAGGGGCAATGACCTGACCGATGAGCGCTTTCGGGACCAGGTTTCCGGAAACGCTGCGCTCAATGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCGAGCACGGCGCTCGGCTTTCCGATACAATGCGa                                                                                                                    <  2:335652/150‑1 (MQ=255)                                                      tgacctgaccGATGAGCGCTTTCGGGACCAGGTTTCCGGAAACGCTGCGCTCAATGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCGAGCGCCGTGCTCGGccttgc                                                                                                                                >  1:3832/1‑115 (MQ=255)                                                      tgacctgaccGATGAGCGCTTTCGGGACCAGGTTTCCGGAAACGCTGCGCTCAATGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCGAGCGCCGTGCTCGGccttgc                                                                                                                                <  2:3832/120‑6 (MQ=255)                                                      tgacctgaccGATGAGCGCTTTCGGGACCAGGTTTCCGGAAACGCTGCGCTCAATGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCGAGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACtgt                                                                                                  <  1:279579/150‑1 (MQ=255)                                                         cctgaccGATGAGCGCTTTCGGGACCAGGTTTCCGGAAACGCTGCGCTCAATGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCGAGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTc                                                                                               <  1:482562/150‑1 (MQ=255)                                                              ccGATGAGCGCTTTCGGGACCAGGTTTCCGGAAACGCTGCGCTCAATGGAGTACCCGTGCAGGCTGAGTGCTCTTGAGGAACGGCAAGGCCGAGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATa                                                                                          <  1:412817/150‑1 (MQ=255)                                                                    aGCGCTTTCGGGACCAGGTTTCCGGAAACGCTGCGCTCAATGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCGAGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAg                                                                                    <  1:784401/150‑1 (MQ=255)                                                                         tttCGGGACCAGGTTTCCGGAAACGCTGCGGTGAATGGGGTACCCGTGCAGGTCGAGGCGTCTGGACGTGGGTCAAGGCCGAGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAg                                                                               <  1:412979/150‑1 (MQ=255)                                                                          ttCGGGACCAGGTTTCCGGAAACGCTGCGGTCAATGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCGAGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAgg                                                                              <  1:400039/150‑1 (MQ=255)                                                                                                   tGCGCTCAATGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCGAGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGc                                                                                   >  1:2630/1‑120 (MQ=255)                                                                                                   tGCGCTCAATGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCGAGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGc                                                                                   <  2:2630/120‑1 (MQ=255)                                                                                                        tCAATGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCGAGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATGGATATCATCGAAACGATCaaa                                                <  2:578316/150‑1 (MQ=255)                                                                                                                      gTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCGGGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATGGATATCATCGAAACGATCAAAGAGCAGATTGCcaa                                  <  1:5638/150‑1 (MQ=255)                                                                                                                            gTCGAGGCCGCTTGAGGAACGGCAAGGCCGAGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATGGat                                                                  >  2:289888/1‑112 (MQ=255)                                                                                                                            gTCGAGGCCGCTTGAGGAACGGCAAGGCCGAGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATGGat                                                                  <  1:289888/112‑1 (MQ=255)                                                                                                                              cacggtgtcgcattgtatcggaaaGCCGAGCGCCGTGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATGGATATCATCGAAACGATCAAAGAGCAGATTGCCAACAACACCa                          <  1:286677‑M1/126‑1 (MQ=255)                                                                                                                                  gCCGCTTGAGGAACGGCAAGGCCGAGCACGGCGCTCGGCTTTCCGATCCAATGTGATACCAGACCAACAACCTGGTCGGATAGTTCAGCCGAGGTGCTACATGGATATCATCGAAACGATCAAAGAGCAGATTGCCAACAACACCATTCt                      <  1:412936/150‑1 (MQ=255)                                                                                                                                     gCTTGAGGAACGGCAAGGCCGAGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGAATGTGTCGGATAGTTCAGACGAGGTGCTACATGGATATCATCGAAACGATCAAAGAGCAGATTGACAACAAAACAATTATgat                   >  2:289353/1‑148 (MQ=255)                                                                                                                                          aGGAACGGCAAGGCCGAGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATGGATATCATCGAAACGATCAAAGAGCAGATTGCCAACAACACCATTCTGCTTTACa              >  2:85433/1‑150 (MQ=255)                                                                                                                                               tcggaaaGCCGAGCGCCGTGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACAt                                                                      >  1:294921‑M1/8‑89 (MQ=255)                                                                                                                                               tcggaaaGCCGAGCGCCGTGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACAt                                                                      <  2:294921‑M1/82‑1 (MQ=255)                                                                                                                                                  gaaaGCCGAGCGCCGTGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATGGATATCATCGAAACGATCAAAGAGCAGATTGc                                     >  1:603961‑M1/5‑119 (MQ=255)                                                                                                                                                  gaaaGCCGAGCGCCGTGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATGGATATCATCGAAACGATCAAAGAGCAGATTGc                                     <  2:603961‑M1/115‑1 (MQ=255)                                                                                                                                                  gaaaGCCGAGCGCCGTGCTCGGCCTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATGGat                                                                  <  2:395045‑M1/86‑1 (MQ=255)                                                                                                                                                  gaaaGCCGAGCGCCGTGCTCGGCCTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATGGat                                                                  >  1:395045‑M1/5‑90 (MQ=255)                                                                                                                                                   aaGGCCGAGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATGGATATCATCGAAACGATCAAAGAGCAGATTGCCAACAACACCATTCTGCTTTACATGAAAGGCt     >  1:747864/1‑150 (MQ=255)                                                                                                                                                      GCCGAGCGCCGTGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATGGATATCATCGAAACGATCAAAGAGCAGATTGCCAACAACACCATTCTGCTTTACATGAAAGGCTCGc  >  2:286677‑M1/1‑150 (MQ=255)                                                                                                                                                      GCCGAGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGa                                                                                            <  1:177783‑M1/60‑1 (MQ=255)                                                                                                                                                      GCCGAGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGa                                                                                            >  2:177783‑M1/1‑60 (MQ=255)                                                                                                                                                      |                                                                                                                                                      CGTCACGGCGTGCACCTGCAGATCGCCCTGGCGCAACCCGGCGTGAGTGCCAATGACCTGACCGATGAGCGCTTTCGGGACCAGGTTTCCGGAAACGCTGCGCTCAATGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCGAGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATGGATATCATCGAAACGATCAAAGAGCAGATTGCCAACAACACCATTCTGCTTTACATGAAAGGCTCGC  >  NC_002947/1241377‑1241675

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.