New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2887906	29 (0.980)	4 (0.140)	4/240	NT	13.1%	coding (806/1425 nt)	PP_2542	GntR family transcriptional regulator
	?	NC_002947	= 2887947	25 (0.870)					coding (765/1425 nt)	PP_2542	GntR family transcriptional regulator

GCTCTTGGAATAGCTGCCCACGTACACCACCTGCTGCAGATGGTCGAGGCTGGCCAGGCACGGCTGCGGCTCGGCGACCATGTCGGCGTACAGGTTGTTCTCCACCAGGCGGAAGCCATGCTGGCTAGCAAGCTGCAGCAGGCGGTGCAACTGCGGCAGCGGGGTGCGGGAGCACGTCGGGCTGTGCAGGTGCGGCTGGGTGAAGAACGCCGTCGGGCGGTGGTGGCTGAGCAGTTGCTCCAGCTGGTTCAGGTCGTAGCCGGCCGGTGTACGTGGCACGCCTACCAGGGTTGCG  >  NC_002947/2887758‑2888052                                                                                                                                                     |                                                                                                                                                   gCTCTTGGAATAGCTGCCCACGTACACCACCTGCTGCAGATGGTCGAGGCTGGCCAGGCACGGCTGCGGCTCGGCGACCATGTCGGCGTACAGGTTGTTCTCCACCAGGCGGAAGCCATGCTGGCTAGCAAGCTGCAGCAGGCGGTGCaa                                                                                                                                                   <  2:320451/150‑1 (MQ=255)     ttGGAATAGCTGCCCACGTACACCACCTGCTGCAGATGGTCGAGGCTGGCCAGGCACGGCTGCGGCTCGGCGACCATGTCGGCGTACAGGTTGTTCTCCACCAGGCGGAAGCCATGCTGGCTAGCAAGCTGCAGCAGGCGGTGCAACTGc                                                                                                                                               <  1:342181/150‑1 (MQ=255)      tGGAATAGCTGCCCACGTACACCACCTGCTGCAGATGGTCGAGGCTGGCCAGGCACGGCTGCGGCTCGGCGACCATGTCGGCGTACAGGTTGTTCTCCACCAGGCGGAAGCCATGCTGGCTAGCAAGCTGCAGCAGGCGGTGCAcctgca                                                                                                                                              >  2:79978‑M1/1‑144 (MQ=255)                    aCGTACACCACCTGCTGCAGATGGTCGAGGCTGGCCAGGCACGGCTGCGGCTCGGCGACCATGTCGGCGTACAGGTTGTTCTCCACCAGGCGGAAGCCATGCTGGCTAGCAAGCTGCAGCAGGCGGTGCAACTGCGGCAGCGGGGTGCgg                                                                                                                                <  1:173729/150‑1 (MQ=255)                    aCGTACACCACCTGCTGCAGATGGTCGAGGCTGGCCAGGCACGGCTGCGGCTCGGCGACCATGTCGGCGTACAGGTTGTTCTCCACCAGGCGGAAGCCATGCTGGCTAGCAAGCTGCAGCAGGCGGTGCAACTGCGGCAGCGGGGTGCgg                                                                                                                                >  2:589740/1‑150 (MQ=255)                          accaccTGCTGCAGATGGTCGAGGCTGGCCAGGCACGGCTGCGGCTCGGCGACCATGTCGGCGTACAGGTTGTTCTCCACCAGGCGGAAGCCATGCTGGCTAGCAAGCTGCAGCAGGCGGTGCAACTGCGGCAGCGGGGTGCGGGAGCAc                                                                                                                          <  1:501393/150‑1 (MQ=255)                           ccaccTGCTGCAGATGGTCGAGGCTGGCCAGGCACGGCTGCGGCTCGGCGACCATGTCGGCGTACAGGTTGTTCTCCACCAGGCGGAAGCCATGCTGGCTAGCAAGCTGCAGCAGGCGGTGCAACTGCGGCAGCGGGGTGCGGGAGCACg                                                                                                                         >  2:676701/1‑150 (MQ=255)                               ctgctgCAGATGGTCGAGGCTGGCCAGGCAAGGCTGCGGCTCGGCGACCATGTCGGCGTACAGGTTGTTCTCCACCAGGCGGAAGCCATGCTGGCTAGCAAGCTGCAGCAGGCGGTGCAACTGCGGCAGCGGGGTGCGGGAGCACGTCgg                                                                                                                     >  1:551471/1‑150 (MQ=255)                                    gcAGATGGTCGAGGCTGGCCAGGCACGGCTGCGGCTCGGCGACCATGTCGGCGTACAGGTTGTTCTCCACCAGGCGGAAGCCATGCTGGCTAGCAAGCTGCAGCAGGCGGTGCAACTGCGGCAGCGGGGTGCGGGAGCACGTCGAGCtgt                                                                                                                <  2:220636/150‑1 (MQ=255)                                             cGAGGCTGGCCAGGCACGGCTGCGGCTCGGCGACCATGTCGGCGTACAGGTTGTTCTCCACCAGGCGGAAGCCATGCTGGCTAGCAAGCTGCAGCAGGCGGTGCAcctgcacagcccgacgtgctcccgcaccccgctgccgcagttgca                                                                                                       <  1:79978‑M1/150‑46 (MQ=255)                                                  cTGGCCAGGCACGGCTGCGGCTCGGCGACCATGTCGGCGTACAGGTTGTTCTCCACCAGGCGGAAGCCATGCTGGCTAGCAAGCTGCAGCAGGCGGTGCAACTGCGGCAGCGGGGTGCGGGAGCACGTCGGGCTGTGCAGGTGCGGCTgg                                                                                                  <  1:223752/150‑1 (MQ=255)                                                  cTGGCCAGGCAAGGCTGCGGCTCGGCGACCATGTCGGCGTACAGGTTGTTCTCCACCAGGCGGAAGCCATGCTGGCTAGCAAGCTGCAGCAGGCGGTGCAACTGCGGCAGCGGGGTGCGGGAGCACGTCGGGCTGTGCAGGTGCGGCTgg                                                                                                  <  2:551471/150‑1 (MQ=255)                                                    ggCCAGGCACGGCTGCGGCTCGGCGACCATGTCGGCGTACAGGTTGTTCTCCACCAGGCGGAAGCCATGCTGGCTAGCAAGCTGCAGCAGGCGGTGCAACTGCGGCAGCGGGGTGCGGGAGCACGTCGGGCTGTGCAGGTGCGGCTGGGt                                                                                                <  1:479460/150‑1 (MQ=255)                                                     gCCAGGCACGGCTGCGGCTCGGCGACCATGTCGGCGTACAGGTTGTTCTCCACCAGGCGGAAGCCATGCTGGCTAGCAAGCTGCAGCAGGCGGTGCAACTGCGGCAGCGGGGTGCGGGAGCACGTCGGGCTGTGCAGGTGCGGCTGGGTg                                                                                               >  1:367737/1‑150 (MQ=255)                                                       cAGGCACGGCTGCGGCTCGGCGACCATGTCGGCGTACAGGTTGTTCTCCACCAGGCGGAAGCCATGCTGGCTAGCAAGCTGCAGCAGGCGGTGCAACTGCGGCAGCGGGGTGCGGGAGCACGTCGGGCTGTGCAGGTGCGGCTGGGTgaa                                                                                             <  1:567593/150‑1 (MQ=255)                                                              ggCTGCGGCTCGGCGACCATGTCGGCGTACAGGTTGTTCTCCACCAGGCGGAAGCCATGCTGGCTAGCAAGCTGCAGCAGGCGGTGCAACTGCGGCAGCGGGGTGCGGGAGCACGTCGGGCTGTGCAGGTGCGGCTGGGTGAAGAACGcc                                                                                      <  1:676701/150‑1 (MQ=255)                                                                      cTCGGCGACCATGTCGGCGTACAGGTTGTTCTCCACCAGGCGGAAGCCATGCTGGCTAGCAAGCTGCAGCAGGCGGTGCAcctgcacagcccgacgtgctcccgcaccccgctgccgcagtt                                                                                                          <  2:423471‑M1/122‑43 (MQ=255)                                                                      cTCGGCGACCATGTCGGCGTACAGGTTGTTCTCCACCAGGCGGAAGCCATGCTGGCTAGCAAGCTGCAGCAGGCGGTGCAcctgcacagcccgacgtgctcccgcaccccgctgccgcagtt                                                                                                          >  1:423471‑M1/1‑80 (MQ=255)                                                                                aTGTCGGCGTACAGGTTGTTCTCCACCAGGCGGAAGCCATGCTGGCTAGCAAGCTGCAGCAGGCGGTGCAACTGCGGCAGC‑GGGTGCGGGAGCACGTCGGGCTGTGCAGGTGCGGCTGGGTGAAGAACGCCGTCGGGCGGTGGTGGCTGa                                                                   <  1:388921/150‑1 (MQ=255)                                                                                 tGTCGGCGTACAGGTTGTTCTCCACCAGGCGGAAGCCATGCTGGCTAGCAAGCTGCAGCAGGCGGTGCAACTGCGGCAGCGGGGTGCGGGAGCACGTCGGGCTGTGCAGGTGCGGCTGGGTGAAGAACGCCGTCGGGCGGTGGTGGCTGa                                                                   <  2:189559/150‑1 (MQ=255)                                                                                          aCAGGTTGTTCTCCACCAGGCGGAAGCCATGCTGGCTAGCAAGCTGCAGCAGGCGGTGCAACTGCGGCATCGGGGTGCGGGAGCACGTCGGGCTGTGCAGGTGCGGCTgg                                                                                                  >  2:224019/1‑110 (MQ=255)                                                                                          aCAGGTTGTTCTCCACCAGGCGGAAGCCATGCTGGCTAGCAAGCTGCAGCAGGCGGTGCAACTGCGGCATCGGGGTGCGGGAGCACGTCGGGCTGTGCAGGTGCGGCTgg                                                                                                  <  1:224019/110‑1 (MQ=255)                                                                                                  ttCTCCACCAGGCGGAAGCCATGCTGGCTAGCAAGCTGCAGCAGGCGGTGCAACTGCGGCAGCGGGGTGCGGGAGCACGTCGGGCTGTGCAGGTGCGGCTGGGTGAAGAACGCCGTCGGGCGGTGGTGGCTGAGCAGTTGCTCCAGCTgg                                                  <  1:112802/150‑1 (MQ=255)                                                                                                     tcCACCAGGCGGAAGCCATGCTGGCTAGCAAGCTGCAGCAGGCGGTGCAACTGCGGCAGCGGGGTGCGGGAGCACGTCGGGCTGTGCAGGTGCGGCTGGGTGAAGAACGCCGTCGGGCGGTGGTGGCTGAGCAGTTGCTCCAGCTGGTTc                                               >  1:72863/1‑150 (MQ=255)                                                                                                     tcCACCAGGCGGAAGCCATGCTGGCTAGCAAGCTGCAGCAGGCGGTGCAACTGCGGCAGCGGGGTGCGGGAGCACGTCGGGCTGTGCAGGTGCGGCTGGGTGAAGAACGCCGTCGGGCGGTGGTGGCTGAGCAGTTGCTCCAGCTGGTTc                                               <  1:589740/150‑1 (MQ=255)                                                                                                      ccaccaGGCGGAAGCCATGCTGGCTAGCAAGCTGCAGCAGGCGGTGCAACTGCGGCAGCGGGGTGCGGGAGCACGTCGGGCTGTGCAGGTTCGGCTGGGTGAAGAACGCCGTCGGGCGGTGGTGGCTGAGCAGTTGCTCCAGCTGGCTCa                                              >  2:306389/1‑150 (MQ=255)                                                                                                        accaGGCGGAAGCCATGCTGGCTAGCAAGCTGCAGCAGGCGGTGCAACTGCGGCAGCGGGGTGCGGGAGCACGTCGGGCTGTGCAGGTGCGGc                                                                                                     >  2:191917/1‑93 (MQ=255)                                                                                                        accaGGCGGAAGCCATGCTGGCTAGCAAGCTGCAGCAGGCGGTGCAACTGCGGCAGCGGGGTGCGGGAGCACGTCGGGCTGTGCAGGTGCGGc                                                                                                     <  1:191917/93‑1 (MQ=255)                                                                                                             gCGGAAGCCATGCTGGCTAGCAAGCTGCAGCAGGCGGTGCAACTGCGGCAGCGGGGTGCGGGAGCACGTCGGGCTGTGCGGGTGCGGCTGGGTGAAGAACGCCGTCGGGCGGTGGTGGCTGAGCAGTTGCTCCAGCTGGTTCAGGTCGTa                                       >  1:87271/1‑150 (MQ=255)                                                                                                                  aGCCATGCTGGCTCGCAAGCTGCAGCTGGCGGGGCAACTGCGGCAGCGGGGGGCGGGAGCACGTCGGGCTGTGCAGGTGCGGCTGGGTGAAGAACGCCGTCGGGCTGTTTGGGCTGAGCAGTTGCTCCAGCTGGTTCAGGTCGTAgccgg                                  >  2:571431/1‑150 (MQ=255)                                                                                                                  aGCCATGCTGGCTAGCAAGCTGCAGCAGGCGGTGCAACTGCGGCAGCGGGGTGCGGGAGCACGTCGGGCTGTGCAGGTGCGGCTGGGTGAAGAACGCCGTCGGGCGGTGGTGGCTGAGCAGTTGCTCCAGCTGGTTCAGGTCGTAgccgg                                  >  1:531175/1‑150 (MQ=255)                                                                                                                              tAGCAAGCTGCAGCAGGCGGTGCCACTGCGGCAGCGGTGTGCGGGAGCACGTCGGGCTGTGCAGGTGCGGCTGGGTGAAGAACGCCGTCGGGCGGTGGTGGCTGAGCAGTTGCTCCAGCTGGTTCAGGTCGTAGCCGGCCGGTGTACGTg                      <  2:686537/150‑1 (MQ=255)                                                                                                                              tAGCAAGCTGCAGCAGGCGGTGCAACTGCGGCAGCGGGGTGCGGGAGCACGTCGGGCTGTGCAGGTGCGGCTGGGTGAAGAACGCCGTCGGGCTGTGGTGGCTGAGCAGTTGCTCCAGCTGGTTCAGGTCGTAGCCGGCCGGTGTACGTg                      <  1:571431/150‑1 (MQ=255)                                                                                                                                     cTGCAGCAGGCGGTGCAACTGCGGCAGCGGGGTGCGGGAGCACGTCGGGCTGTGCAGGTGCGGCTGGGTGAAGAACGCCGTCGGGCGGTGGTGGCTGAGCAGTTGCTCCAGCTGGTTCAGGTCGTAGCCGGCCGGTGTACGTGGCACGcc               >  2:582301/1‑150 (MQ=255)                                                                                                                                            agGCGGTGCAACTGCGGCAGCGGGGTGCGGGAGCACGTCGGGCTGTGCAGGTGCGGCTGGGTGAAGAACGCCGTCGGGCGGTGGTGGCTGAGCAGTTGCTCCAGCTGGTTCAGGTCGTAGCCGGCCGGTGTACGTGGCACGCCTACCAgg        <  1:109318/150‑1 (MQ=255)                                                                                                                                                  tGCAACTGCGGCAGCGGGGTGCGGGAGCACGTCGGGCTGTGCAGGtgcaccgcctgctgcagcttgctagccagcatggcttccgcctggtggagaacaacctgtacgccgacatggtcgccgagccgcagccgtgcctggccagcctcg  <  1:79978‑M2/150‑106 (MQ=255)                                                                                                                                                  tGCAACTGCGGCAGCGGGGTGCGGGAGCACGTCGGGCTGTGCAGGTGCGGCTGGGTGAAGAACGCCGTCGGGCGGTGGTGGCTGAGCAGTTGCTCCAGCTgg                                                  >  1:339015/1‑102 (MQ=255)                                                                                                                                                  tGCAACTGCGGCAGCGGGGTGCGGGAGCACGTCGGGCTGTGCAGGTGCGGCTGGGTGAAGAACGCCGTCGGGCGGTGGTGGCTGAGCAGTTGCTCCAGCTgg                                                  <  2:339015/102‑1 (MQ=255)                                                                                                                                                     aaCTGCGGCAGCGGGGTGCGGGAGCACGTCGGGCTGTGCAGGtgcaccgcctgctgcagcttgctagccagcatggcttccgcctggtggagaacaacctgtacgccgacatggtcgccgag                           >  1:423471‑M2/1‑42 (MQ=255)                                                                                                                                                     aaCTGCGGCAGCGGGGTGCGGGAGCACGTCGGGCTGTGCAGGtgcaccgcctgctgcagcttgctagccagcatggcttccgcctggtggagaacaacctgtacgccgacatggtcgccgag                           <  2:423471‑M2/122‑81 (MQ=255)                                                                                                                                                     |                                                                                                                                                   GCTCTTGGAATAGCTGCCCACGTACACCACCTGCTGCAGATGGTCGAGGCTGGCCAGGCACGGCTGCGGCTCGGCGACCATGTCGGCGTACAGGTTGTTCTCCACCAGGCGGAAGCCATGCTGGCTAGCAAGCTGCAGCAGGCGGTGCAACTGCGGCAGCGGGGTGCGGGAGCACGTCGGGCTGTGCAGGTGCGGCTGGGTGAAGAACGCCGTCGGGCGGTGGTGGCTGAGCAGTTGCTCCAGCTGGTTCAGGTCGTAGCCGGCCGGTGTACGTGGCACGCCTACCAGGGTTGCG  >  NC_002947/2887758‑2888052

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.