New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2887906	29 (0.980)	4 (0.140)	4/240	NT	13.1%	coding (806/1425 nt)	PP_2542	GntR family transcriptional regulator
	?	NC_002947	= 2887947	25 (0.870)					coding (765/1425 nt)	PP_2542	GntR family transcriptional regulator

CTGGCCAGGCACGGCTGCGGCTCGGCGACCATGTCGGCGTACAGGTTGTTCTCCACCAGGCGGAAGCCATGCTGGCTAGCAAGCTGCAGCAGGCGGTGCAACTGCGGCAGCGGGGTGCGGGAGCACGTCGGGCTGTGCAGGTGCGGCTGGGTGAAGAACGCCGTCGGGCGGTGGTGGCTGAGCAGTTGCTCCAGCTGGTTCAGGTCGTAGCCGGCCGGTGTACGTGGCACGCCTACCAGGGTTGCGCCTTGGGTGCGCAGGATGCTCATGAGGTTCGGGTAGCCGGGGTC  >  NC_002947/2887807‑2888096                                                                                                                                             |                                                                                                                                                      cTGGCCAGGCACGGCTGCGGCTCGGCGACCATGTCGGCGTACAGGTTGTTCTCCACCAGGCGGAAGCCATGCTGGCTAGCAAGCTGCAGCAGGCGGTGCAACTGCGGCAGCGGGGTGCGGGAGCACGTCGGGCTGTGCAGGTGCGGCTgg                                                                                                                                              <  1:223752/150‑1 (MQ=255) cTGGCCAGGCAAGGCTGCGGCTCGGCGACCATGTCGGCGTACAGGTTGTTCTCCACCAGGCGGAAGCCATGCTGGCTAGCAAGCTGCAGCAGGCGGTGCAACTGCGGCAGCGGGGTGCGGGAGCACGTCGGGCTGTGCAGGTGCGGCTgg                                                                                                                                              <  2:551471/150‑1 (MQ=255)   ggCCAGGCACGGCTGCGGCTCGGCGACCATGTCGGCGTACAGGTTGTTCTCCACCAGGCGGAAGCCATGCTGGCTAGCAAGCTGCAGCAGGCGGTGCAACTGCGGCAGCGGGGTGCGGGAGCACGTCGGGCTGTGCAGGTGCGGCTGGGt                                                                                                                                            <  1:479460/150‑1 (MQ=255)    gCCAGGCACGGCTGCGGCTCGGCGACCATGTCGGCGTACAGGTTGTTCTCCACCAGGCGGAAGCCATGCTGGCTAGCAAGCTGCAGCAGGCGGTGCAACTGCGGCAGCGGGGTGCGGGAGCACGTCGGGCTGTGCAGGTGCGGCTGGGTg                                                                                                                                           >  1:367737/1‑150 (MQ=255)      cAGGCACGGCTGCGGCTCGGCGACCATGTCGGCGTACAGGTTGTTCTCCACCAGGCGGAAGCCATGCTGGCTAGCAAGCTGCAGCAGGCGGTGCAACTGCGGCAGCGGGGTGCGGGAGCACGTCGGGCTGTGCAGGTGCGGCTGGGTgaa                                                                                                                                         <  1:567593/150‑1 (MQ=255)             ggCTGCGGCTCGGCGACCATGTCGGCGTACAGGTTGTTCTCCACCAGGCGGAAGCCATGCTGGCTAGCAAGCTGCAGCAGGCGGTGCAACTGCGGCAGCGGGGTGCGGGAGCACGTCGGGCTGTGCAGGTGCGGCTGGGTGAAGAACGcc                                                                                                                                  <  1:676701/150‑1 (MQ=255)                               aTGTCGGCGTACAGGTTGTTCTCCACCAGGCGGAAGCCATGCTGGCTAGCAAGCTGCAGCAGGCGGTGCAACTGCGGCAGC‑GGGTGCGGGAGCACGTCGGGCTGTGCAGGTGCGGCTGGGTGAAGAACGCCGTCGGGCGGTGGTGGCTGa                                                                                                               <  1:388921/150‑1 (MQ=255)                                tGTCGGCGTACAGGTTGTTCTCCACCAGGCGGAAGCCATGCTGGCTAGCAAGCTGCAGCAGGCGGTGCAACTGCGGCAGCGGGGTGCGGGAGCACGTCGGGCTGTGCAGGTGCGGCTGGGTGAAGAACGCCGTCGGGCGGTGGTGGCTGa                                                                                                               <  2:189559/150‑1 (MQ=255)                                         aCAGGTTGTTCTCCACCAGGCGGAAGCCATGCTGGCTAGCAAGCTGCAGCAGGCGGTGCAACTGCGGCATCGGGGTGCGGGAGCACGTCGGGCTGTGCAGGTGCGGCTgg                                                                                                                                              <  1:224019/110‑1 (MQ=255)                                         aCAGGTTGTTCTCCACCAGGCGGAAGCCATGCTGGCTAGCAAGCTGCAGCAGGCGGTGCAACTGCGGCATCGGGGTGCGGGAGCACGTCGGGCTGTGCAGGTGCGGCTgg                                                                                                                                              >  2:224019/1‑110 (MQ=255)                                                 ttCTCCACCAGGCGGAAGCCATGCTGGCTAGCAAGCTGCAGCAGGCGGTGCAACTGCGGCAGCGGGGTGCGGGAGCACGTCGGGCTGTGCAGGTGCGGCTGGGTGAAGAACGCCGTCGGGCGGTGGTGGCTGAGCAGTTGCTCCAGCTgg                                                                                              <  1:112802/150‑1 (MQ=255)                                                    tcCACCAGGCGGAAGCCATGCTGGCTAGCAAGCTGCAGCAGGCGGTGCAACTGCGGCAGCGGGGTGCGGGAGCACGTCGGGCTGTGCAGGTGCGGCTGGGTGAAGAACGCCGTCGGGCGGTGGTGGCTGAGCAGTTGCTCCAGCTGGTTc                                                                                           >  1:72863/1‑150 (MQ=255)                                                    tcCACCAGGCGGAAGCCATGCTGGCTAGCAAGCTGCAGCAGGCGGTGCAACTGCGGCAGCGGGGTGCGGGAGCACGTCGGGCTGTGCAGGTGCGGCTGGGTGAAGAACGCCGTCGGGCGGTGGTGGCTGAGCAGTTGCTCCAGCTGGTTc                                                                                           <  1:589740/150‑1 (MQ=255)                                                     ccaccaGGCGGAAGCCATGCTGGCTAGCAAGCTGCAGCAGGCGGTGCAACTGCGGCAGCGGGGTGCGGGAGCACGTCGGGCTGTGCAGGTTCGGCTGGGTGAAGAACGCCGTCGGGCGGTGGTGGCTGAGCAGTTGCTCCAGCTGGCTCa                                                                                          >  2:306389/1‑150 (MQ=255)                                                       accaGGCGGAAGCCATGCTGGCTAGCAAGCTGCAGCAGGCGGTGCAACTGCGGCAGCGGGGTGCGGGAGCACGTCGGGCTGTGCAGGTGCGGc                                                                                                                                                 <  1:191917/93‑1 (MQ=255)                                                       accaGGCGGAAGCCATGCTGGCTAGCAAGCTGCAGCAGGCGGTGCAACTGCGGCAGCGGGGTGCGGGAGCACGTCGGGCTGTGCAGGTGCGGc                                                                                                                                                 >  2:191917/1‑93 (MQ=255)                                                            gCGGAAGCCATGCTGGCTAGCAAGCTGCAGCAGGCGGTGCAACTGCGGCAGCGGGGTGCGGGAGCACGTCGGGCTGTGCGGGTGCGGCTGGGTGAAGAACGCCGTCGGGCGGTGGTGGCTGAGCAGTTGCTCCAGCTGGTTCAGGTCGTa                                                                                   >  1:87271/1‑150 (MQ=255)                                                                 aGCCATGCTGGCTCGCAAGCTGCAGCTGGCGGGGCAACTGCGGCAGCGGGGGGCGGGAGCACGTCGGGCTGTGCAGGTGCGGCTGGGTGAAGAACGCCGTCGGGCTGTTTGGGCTGAGCAGTTGCTCCAGCTGGTTCAGGTCGTAgccgg                                                                              >  2:571431/1‑150 (MQ=255)                                                                 aGCCATGCTGGCTAGCAAGCTGCAGCAGGCGGTGCAACTGCGGCAGCGGGGTGCGGGAGCACGTCGGGCTGTGCAGGTGCGGCTGGGTGAAGAACGCCGTCGGGCGGTGGTGGCTGAGCAGTTGCTCCAGCTGGTTCAGGTCGTAgccgg                                                                              >  1:531175/1‑150 (MQ=255)                                                                             tAGCAAGCTGCAGCAGGCGGTGCCACTGCGGCAGCGGTGTGCGGGAGCACGTCGGGCTGTGCAGGTGCGGCTGGGTGAAGAACGCCGTCGGGCGGTGGTGGCTGAGCAGTTGCTCCAGCTGGTTCAGGTCGTAGCCGGCCGGTGTACGTg                                                                  <  2:686537/150‑1 (MQ=255)                                                                             tAGCAAGCTGCAGCAGGCGGTGCAACTGCGGCAGCGGGGTGCGGGAGCACGTCGGGCTGTGCAGGTGCGGCTGGGTGAAGAACGCCGTCGGGCTGTGGTGGCTGAGCAGTTGCTCCAGCTGGTTCAGGTCGTAGCCGGCCGGTGTACGTg                                                                  <  1:571431/150‑1 (MQ=255)                                                                                    cTGCAGCAGGCGGTGCAACTGCGGCAGCGGGGTGCGGGAGCACGTCGGGCTGTGCAGGTGCGGCTGGGTGAAGAACGCCGTCGGGCGGTGGTGGCTGAGCAGTTGCTCCAGCTGGTTCAGGTCGTAGCCGGCCGGTGTACGTGGCACGcc                                                           >  2:582301/1‑150 (MQ=255)                                                                                           agGCGGTGCAACTGCGGCAGCGGGGTGCGGGAGCACGTCGGGCTGTGCAGGTGCGGCTGGGTGAAGAACGCCGTCGGGCGGTGGTGGCTGAGCAGTTGCTCCAGCTGGTTCAGGTCGTAGCCGGCCGGTGTACGTGGCACGCCTACCAgg                                                    <  1:109318/150‑1 (MQ=255)                                                                                                 tGCAACTGCGGCAGCGGGGTGCGGGAGCACGTCGGGCTGTGCAGGtgcaccgcctgctgcagcttgctagccagcatggcttccgcctggtggagaacaacctgtacgccgacatggtcgccgagccgcagccgtgcctggccagcctcg                                              <  1:79978‑M2/150‑106 (MQ=255)                                                                                                 tGCAACTGCGGCAGCGGGGTGCGGGAGCACGTCGGGCTGTGCAGGTGCGGCTGGGTGAAGAACGCCGTCGGGCGGTGGTGGCTGAGCAGTTGCTCCAGCTgg                                                                                              >  1:339015/1‑102 (MQ=255)                                                                                                 tGCAACTGCGGCAGCGGGGTGCGGGAGCACGTCGGGCTGTGCAGGTGCGGCTGGGTGAAGAACGCCGTCGGGCGGTGGTGGCTGAGCAGTTGCTCCAGCTgg                                                                                              <  2:339015/102‑1 (MQ=255)                                                                                                    aaCTGCGGCAGCGGGGTGCGGGAGCACGTCGGGCTGTGCAGGtgcaccgcctgctgcagcttgctagccagcatggcttccgcctggtggagaacaacctgtacgccgacatggtcgccgag                                                                       >  1:423471‑M2/1‑42 (MQ=255)                                                                                                    aaCTGCGGCAGCGGGGTGCGGGAGCACGTCGGGCTGTGCAGGtgcaccgcctgctgcagcttgctagccagcatggcttccgcctggtggagaacaacctgtacgccgacatggtcgccgag                                                                       <  2:423471‑M2/122‑81 (MQ=255)                                                                                                                 gggTGCGGGAGCACGTCGGGCTGTGCGGGTGCGGCTGGGTGAAGAACGCCGTCGGGCGGTGGTGGCTGAGCAGTTGCTCCAGCTGGTTCAGGTCGTAGCCGGCCGGTGTACGTGGCACGCCTACCAGGGTTGCGCCTTGGGTGCGCAGGa                              <  2:87271/150‑1 (MQ=255)                                                                                                                                tCGGGCTGTGCAGGTGCGGCTGGGATAAGAACGCCGTCGGGCGGTGGTGGCTGAGCAGTTGCTCCAGCTGGTTCAGGTCGTAGCCGGCCGGTGTACGTGGCACGCCTACCAGGGTTGCGCCTTGGGTGCGCAGGATGCTCATGAGGTTCg               >  1:706779/1‑150 (MQ=255)                                                                                                                                        tgCAGGtgcaccgcctgctgcagcttgctagccagcatggcttccgcctggtggagaacaacctgtacgccgacatggtcgccgagccgcagccgtgcctggccagcctcgaccatctgcagcaggtggtgtacgtgggcagctattcca       >  2:79978‑M2/1‑6 (MQ=255)                                                                                                                                             gTGCGGCTGGGTGAAGAACGCCGTCGGGCGGTGGTGGCTGAGCAGTTGCTCCAGCTGGTTCAGGTCGTAGCCGGCCGGTGTACGTGGCACGCCTACCAGGGTTGCGCCTTGGGTGCGCAGGATGCTCATGAGGTTCGGGTAGCCGGGgtc  <  2:367737/150‑1 (MQ=255)                                                                                                                                             |                                                                                                                                                      CTGGCCAGGCACGGCTGCGGCTCGGCGACCATGTCGGCGTACAGGTTGTTCTCCACCAGGCGGAAGCCATGCTGGCTAGCAAGCTGCAGCAGGCGGTGCAACTGCGGCAGCGGGGTGCGGGAGCACGTCGGGCTGTGCAGGTGCGGCTGGGTGAAGAACGCCGTCGGGCGGTGGTGGCTGAGCAGTTGCTCCAGCTGGTTCAGGTCGTAGCCGGCCGGTGTACGTGGCACGCCTACCAGGGTTGCGCCTTGGGTGCGCAGGATGCTCATGAGGTTCGGGTAGCCGGGGTC  >  NC_002947/2887807‑2888096

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.