New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3295560 =	21 (0.710)	4 (0.140)	4/232	NT	15.7%	coding (169/645 nt)	PP_2895	hypothetical protein
	?	NC_002947	3295583 =	23 (0.830)					coding (146/645 nt)	PP_2895	hypothetical protein

GTTGATAATTAGCTCGAACTCTACAGTGCCCTCTTCGATGGAAATGTTCGGGTGGGTAATGGCCGCCATCAGCGGCACTTTCATGGTCTTGCTGACCACGCCTTTGTATTCGCCCTGTTCGTCGACAATGGTTTCGTCGTAGTCGAACTGGATGGCCACTGCCTTG‑CCATCCTGGACGCATACCTGCATCAGGAAATCGGCGTACGATTTGCTGGCGGTTACCTGCGCCTGCACCATGGCCTGCAAGGGGCCGGCGATCATGCGGTCCATCGGCAGGGCA  >  NC_002947/3295411‑3295690                                                                                                                                                      |                                                                                                                                    gTTGATCATTACCTCGAACTCTACAGTGCCCTCTGCGATAGAAATGTTCCAGTGGGTAGTGGCCGCCGTCAGCGGCACTTTCATGGTCTTGCTGACCACGCCTTTGTATCCGCCCTGTTCGTCGACAATGGTTTCGTCGTAGTCGAACTg                                                                                                                                     <  2:109132/150‑1 (MQ=255) gTTGATAATTAGCTCGAACTCTACAGTGCCCTCTTCGATGGAAATGTTCGGGTGGGTAATGGCCGCCATCAGCGGCACTTTCATGGTCTTGCTGACCACGCCTTTGTATTCGCCCTGTTCGTCGACAATGGTTTCGTCGTAGTCGAACTg                                                                                                                                     >  1:565530/1‑150 (MQ=255)             cTCGAACTCTACAGTGCCCTCTTCGATGGAAATGTTCGGGTGGGTAATGGCCGCCATCAGCGGCACTTTCATGGTCTTGCTGACCACGCCTTTGTATTCGCCCTGTTCGTCGACAATGGTTTCGTCGTAGTCGAACTGGATGGCCACTGc                                                                                                                         >  1:610099/1‑150 (MQ=255)                 acagccttataggctccgtgatcaatgccctgccgatggaccgcatgatcgccggccccttgcaggccatggtgcaggcgcaggtaaccgccagcaaatcgtacgccgatttcctgatgcaggtatgcgtccaGGATgg                                                                                                                                >  2:70085‑M1/134‑139 (MQ=255)                 acagccttataggctccgtgatcaatgccctgccgatggaccgcatgatcgccggccccttgcaggccatggtgcaggcgcaggtaaccgccagcaaatcgtacgccgatttcctgatgcaggtatgcgtccaGGATgg                                                                                                                                <  1:70085‑M1/6‑1 (MQ=255)                      tACAGTACCCTCTTCGATGGAAATGTTCGGGTGGGTAATGGCCGCCATCAGCGGCACTTTCATGGTCTTGCTGACCACGCCTTTGTATTCGCCCTGTTCGTCGACAATGGTTTCGTCGTAGTCGAACTGGATGGCCACTGCCTTG‑CCATc                                                                                                               >  2:294620/1‑150 (MQ=255)                            gCCCTCTTCGATGGAAATGTTCGGGTGGGTAATGGCCGCCATCAGCGGCACTTTCATGGTCTTGCTGACCACGCCTTTGTATTCGCCCTGTTCGTCGACAATGGTTTCGTCGTAGTCGAACTGGATGGCCACTGCCTTG‑CCATCCTGGAc                                                                                                         <  2:428036/150‑1 (MQ=255)                                 ctTCGATGGAAATGTTCGGGTGGGTAATGGCCGCCATCAGCGGCACTTTCATGGTCTTGCTGACCACGCCTTTGTATTCGCCCTGTTCGTCGACAATGGTTTCGTCGTAGTCGAACTGGATGGCCACTGCCTTG‑CCATCCTGGACGCATa                                                                                                    <  2:604506/150‑1 (MQ=255)                                    cGATGGAAATGTTCGGGTGGGTAATGGCCGCCATCAGCGGCACTTTCATGGTCTTGCTGACCACGCCTTTGTATTCGCCCTGTTCGTCGACAATGGTTTCGTCGTAGTCGAACTGGATGGCCACTGCCTTG‑ACATCCTGGACGCATACCt                                                                                                 <  2:610099/150‑1 (MQ=255)                                                    gtgggtAATGGCCGCCATCAGCGGCACTTTCATGGTCTTGCTGACCACGCCTTTGTATTCGCCCTGTTCGTCGACAATGGTTTCGTCGTAGTCGAACTGGATGGCCACTGCCTTG‑CCATCCTGGACGCATACCTGCATCAGGAAATCGGc                                                                                 <  1:440817/150‑1 (MQ=255)                                                    gtgggtAATGGCCGCCATCAGCGGCACTTTCATGGTCTTGCTGACCACGCCTTTGTATTCGCCCTGTTCGTCGACAATGGTTTCGTCGTAGTCGAACTGGATGGCCACTGCCTTG‑CCATCCTGGACGCATACCTGCATCAGGAAATCGGc                                                                                 <  2:81398/150‑1 (MQ=255)                                                                                       tCTTGCTGACCACGCCTTTGTATTCGCCCTGTTCGTCGACAATGGTTTCGTCGTAGTCGAACTGGATGGCCACTGGCTTG‑CCATCCTGGACGCATACCTGCATCAGGAAATCGGCGTACGATTTGCTGGCGGTTACCTGCGCCTGCACCa                                              >  2:61914/1‑150 (MQ=255)                                                                                                 cACGCGTTTGTATTAGCCCTGTTCGTCGGTAATGGTTTCGTCGTAGTCGAACGGGATGGCCACTGCCTTG‑CCATCCTGGACGCATACCTGCATCAGGAAATCGGCGTACGATTTGCTGGCGGTTACCTGCGCCTGCACCATGGCCTGCaa                                    <  2:565530/150‑1 (MQ=255)                                                                                                    gCCTTTGTATTCGCCCTGTTCGTCGACAATGGTTTCGTCGTAGTCGAACTGGATGGCCACTGCCTTG‑CCATCCTGGACGCATACCTGCATCAGGAAATCGGCGTACGATTTGCTGGCGGTTACCTGCGCCTGCACCATGGCCTGCAAggg                                 >  2:337735/1‑150 (MQ=255)                                                                                                         tGTATTCGCCCTGTTCGTCGACAATGGTTTCGTCGTAGTCGAACTGGATGGCCACTGCCTTG‑CCATCCTGGACGCATACCTGCATCAGGAAATCGGCGTACGATTTGCTGGCGGTTACCTGCGCCTGCACCATGGCCTGCAAGGGGCCgg                            <  1:294620/150‑1 (MQ=255)                                                                                                                          tcgACAATGGTTTCGTCGTAGTCGAACTGGATGGCCACTGCCTTG‑CCATCCTGGACGCATACCTGCATCAGGAAATCGGCGTACGATTTGCTGGCGGTTACCTGCGCCTGCACCATGGCCTGCAAg                                   >  1:539617/1‑126 (MQ=255)                                                                                                                          tcgACAATGGTTTCGTCGTAGTCGAACTGGATGGCCACTGCCTTG‑CCATCCTGGACGCATACCTGCATCAGGAAATCGGCGTACGATTTGCTGGCGGTTACCTGCGCCTGCACCATGGCCTGCAAg                                   <  2:539617/126‑1 (MQ=255)                                                                                                                           ctaCAATGGTTTCGTCGTAGTCGAACTGGATAGCCACTGCCTTG‑CCATCCTGGACGCATACCTGCATCAGGAAATCGGCGTACGATTTGCTGGCGCCAGCAAGCTCCTGTACCATGGCCTGCAAGGGGCCGGCGATCATGCGGTCCATCg          <  1:337735/148‑1 (MQ=255)                                                                                                                                  ctgatgcaggtatgcgtccaGGATGGCAAG‑GCAGTGGCCATCCAGGACGCATACCTGCATCAGGAAATCGGCGTACGATTTGCTGGCGGTTACCTGCGCCTGCACCATGGCCTGCAAGGGGCCGGc                           >  1:59724‑M1/21‑126 (MQ=255)                                                                                                                                  ctgatgcaggtatgcgtccaGGATGGCAAG‑GCAGTGGCCATCCAGGACGCATACCTGCATCAGGAAATCGGCGTACGATTTGCTGGCGGTTACCTGCGCCTGCACCATGGCCTGCAAGGGGCCGGc                           <  2:59724‑M1/106‑1 (MQ=255)                                                                                                                                   gTTTCGTCGTAGTCGAACTGGATGGCCACTGCCTTG‑CCATCCTGGACGCATACCTGCATCAGGAAATCGGCGTACGATTTGCTGGCGGTTACCTGCGCCTGCACCATGGCCTGCAAGGGGCCGGCGATCATGCGGTCCATCGGCAGGGCa  >  1:559371/1‑150 (MQ=255)                                                                                                                                    tttCGTCGTAGTCGAACTGGATGGCCACTGCCTTG‑CCATCCTGGACGCATACCTGCATCAGGAAATCGGCGTACGCTTTGCTGGCGGTTACCTGCGCCTGCACCATGGCCTGCAAGGGGCCGGCGATCATGCGGt                <  2:163420/135‑1 (MQ=255)                                                                                                                                    tttCGTCGTAGTCGAACTGGATGGCCACTGCCTTG‑CCATCCTGGACGCATACCTGCATCAGGAAATCGGCGTACGATTTGCTGGCGGTTACCTGCGCCTGCACCATGGCCTGCAAGGGGCCGGCGATCATGCGGt                >  1:163420/1‑135 (MQ=255)                                                                                                                                    gatgcaggtatgcgtccaGGATGGCAAG‑GCAGTGGCCATCCTGGACGCATACCTGCATCAGGAAATCGGCGTACGATTTGCTGGCGGTTACCTGCGCCTGCACCATGGCCTGCaa                                    <  2:519965‑M1/97‑1 (MQ=255)                                                                                                                                    gatgcaggtatgcgtccaGGATGGCAAG‑GCAGTGGCCATCCTGGACGCATACCTGCATCAGGAAATCGGCGTACGATTTGCTGGCGGTTACCTGCGCCTGCACCATGGCCTGCaa                                    >  1:519965‑M1/19‑115 (MQ=255)                                                                                                                                        gtcgtAGTCGAACTGGATGGCCACTGCCTTG‑CCATCCTGGACGCATACCTGCATCAGGAAATCGGCGTACGATTTGCTGGCGGTTACCTg                                                         <  1:98156/90‑1 (MQ=255)                                                                                                                                        gtcgtAGTCGAACTGGATGGCCACTGCCTTG‑CCATCCTGGACGCATACCTGCATCAGGAAATCGGCGTACGATTTGCTGGCGGTTACCTg                                                         >  2:98156/1‑90 (MQ=255)                                                                                                                                              gTCGAACTGGATGGCCACTGCCTTG‑CCATCCTGGACGCATACCTGCATCAGGAAATCGGCGTACGATTTGCTGGCGGTTACCTGCGCCTGCAc                                                <  1:750185/93‑1 (MQ=255)                                                                                                                                              gTCGAACTGGATGGCCACTGCCTTG‑CCATCCTGGACGCATACCTGCATCAGGAAATCGGCGTACGATTTGCTGGCGGTTACCTGCGCCTGCAc                                                >  2:750185/1‑93 (MQ=255)                                                                                                                                                      GGATGGCCACTGCCTTG‑CCATCCTGGACGCATACCTGCATCAGGAAATCGGCGTACGATTTGCTGGCGGTTACCTGCGCCTGCACCATGGCCTGCAAGGGGCCGGCGATCATGCGGTCCATCGGCa       <  2:515579‑M1/126‑1 (MQ=255)                                                                                                                                                      GGATGGCCACTGCCTTG‑CCATCCTGGACGCATACCTGCATCAGGAAATCGGCGTACGATTTGCTGGCGGTTACCTGCGCCTGCACCATGGCCTGCAAGGGGCCGGCGATCATGCGGTCCATCGGCa       >  1:515579‑M1/1‑126 (MQ=255)                                                                                                                                                      |                                                                                                                                    GTTGATAATTAGCTCGAACTCTACAGTGCCCTCTTCGATGGAAATGTTCGGGTGGGTAATGGCCGCCATCAGCGGCACTTTCATGGTCTTGCTGACCACGCCTTTGTATTCGCCCTGTTCGTCGACAATGGTTTCGTCGTAGTCGAACTGGATGGCCACTGCCTTG‑CCATCCTGGACGCATACCTGCATCAGGAAATCGGCGTACGATTTGCTGGCGGTTACCTGCGCCTGCACCATGGCCTGCAAGGGGCCGGCGATCATGCGGTCCATCGGCAGGGCA  >  NC_002947/3295411‑3295690

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.