New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3295560 =	21 (0.710)	4 (0.140)	4/232	NT	15.7%	coding (169/645 nt)	PP_2895	hypothetical protein
	?	NC_002947	3295583 =	23 (0.830)					coding (146/645 nt)	PP_2895	hypothetical protein

GCCCTCTTCGATGGAAATGTTCGGGTGGGTAATGGCCGCCATCAGCGGCACTTTCATGGTCTTGCTGACCACGCCTTTGTATTCGCCCTGTTCGTCGACAATGGTTTCGTCGTAGTCGAACTGGATGGCCACTGCCTTG‑CCATCCTGGACGCATACCTGCATCAGGAAATCGGCGTACGATTTGCTGGCGGTTACCTGCGCCTGCACCATGGCCTGCAAGGGGCCGGCGATCATGCGGTCCATCGGCAGGGCATTGATCACGGAGCCTATAAGGCTGTTATCTAACGGCATATCG  >  NC_002947/3295438‑3295732                                                                                                                                                   |                                                                                                                                                      gCCCTCTTCGATGGAAATGTTCGGGTGGGTAATGGCCGCCATCAGCGGCACTTTCATGGTCTTGCTGACCACGCCTTTGTATTCGCCCTGTTCGTCGACAATGGTTTCGTCGTAGTCGAACTGGATGGCCACTGCCTTG‑CCATCCTGGAc                                                                                                                                                   <  2:428036/150‑1 (MQ=255)      ctTCGATGGAAATGTTCGGGTGGGTAATGGCCGCCATCAGCGGCACTTTCATGGTCTTGCTGACCACGCCTTTGTATTCGCCCTGTTCGTCGACAATGGTTTCGTCGTAGTCGAACTGGATGGCCACTGCCTTG‑CCATCCTGGACGCATa                                                                                                                                              <  2:604506/150‑1 (MQ=255)         cGATGGAAATGTTCGGGTGGGTAATGGCCGCCATCAGCGGCACTTTCATGGTCTTGCTGACCACGCCTTTGTATTCGCCCTGTTCGTCGACAATGGTTTCGTCGTAGTCGAACTGGATGGCCACTGCCTTG‑ACATCCTGGACGCATACCt                                                                                                                                           <  2:610099/150‑1 (MQ=255)                         gtgggtAATGGCCGCCATCAGCGGCACTTTCATGGTCTTGCTGACCACGCCTTTGTATTCGCCCTGTTCGTCGACAATGGTTTCGTCGTAGTCGAACTGGATGGCCACTGCCTTG‑CCATCCTGGACGCATACCTGCATCAGGAAATCGGc                                                                                                                           <  2:81398/150‑1 (MQ=255)                         gtgggtAATGGCCGCCATCAGCGGCACTTTCATGGTCTTGCTGACCACGCCTTTGTATTCGCCCTGTTCGTCGACAATGGTTTCGTCGTAGTCGAACTGGATGGCCACTGCCTTG‑CCATCCTGGACGCATACCTGCATCAGGAAATCGGc                                                                                                                           <  1:440817/150‑1 (MQ=255)                                         gccggccccttgcaggccatggtgcaggcgcaggtaaccgccagcaaatcgtacgccgatttcctgatgcaggtatgcgtcctggatggccactgccttgccatccTGGACGCATACCTGCATCAg                                                                                                                                    >  1:59724‑M2/107‑126 (MQ=255)                                         gccggccccttgcaggccatggtgcaggcgcaggtaaccgccagcaaatcgtacgccgatttcctgatgcaggtatgcgtcctggatggccactgccttgccatccTGGACGCATACCTGCATCAg                                                                                                                                    <  2:59724‑M2/20‑1 (MQ=255)                                                  ttgcaggccatggtgcaggcgcaggtaaccgccagcaaatcgtacgccgatttcctgatgcaggtatgcgtccaggatggccactgccttgccatccTGGACGCATACCTGCATc                                                                                                                                      >  1:519965‑M2/98‑115 (MQ=255)                                                  ttgcaggccatggtgcaggcgcaggtaaccgccagcaaatcgtacgccgatttcctgatgcaggtatgcgtccaggatggccactgccttgccatccTGGACGCATACCTGCATc                                                                                                                                      <  2:519965‑M2/18‑1 (MQ=255)                                                            tCTTGCTGACCACGCCTTTGTATTCGCCCTGTTCGTCGACAATGGTTTCGTCGTAGTCGAACTGGATGGCCACTGGCTTG‑CCATCCTGGACGCATACCTGCATCAGGAAATCGGCGTACGATTTGCTGGCGGTTACCTGCGCCTGCACCa                                                                                        >  2:61914/1‑150 (MQ=255)                                                                      cACGCGTTTGTATTAGCCCTGTTCGTCGGTAATGGTTTCGTCGTAGTCGAACGGGATGGCCACTGCCTTG‑CCATCCTGGACGCATACCTGCATCAGGAAATCGGCGTACGATTTGCTGGCGGTTACCTGCGCCTGCACCATGGCCTGCaa                                                                              <  2:565530/150‑1 (MQ=255)                                                                         gCCTTTGTATTCGCCCTGTTCGTCGACAATGGTTTCGTCGTAGTCGAACTGGATGGCCACTGCCTTG‑CCATCCTGGACGCATACCTGCATCAGGAAATCGGCGTACGATTTGCTGGCGGTTACCTGCGCCTGCACCATGGCCTGCAAggg                                                                           >  2:337735/1‑150 (MQ=255)                                                                              tGTATTCGCCCTGTTCGTCGACAATGGTTTCGTCGTAGTCGAACTGGATGGCCACTGCCTTG‑CCATCCTGGACGCATACCTGCATCAGGAAATCGGCGTACGATTTGCTGGCGGTTACCTGCGCCTGCACCATGGCCTGCAAGGGGCCgg                                                                      <  1:294620/150‑1 (MQ=255)                                                                                               tcgACAATGGTTTCGTCGTAGTCGAACTGGATGGCCACTGCCTTG‑CCATCCTGGACGCATACCTGCATCAGGAAATCGGCGTACGATTTGCTGGCGGTTACCTGCGCCTGCACCATGGCCTGCAAg                                                                             <  2:539617/126‑1 (MQ=255)                                                                                               tcgACAATGGTTTCGTCGTAGTCGAACTGGATGGCCACTGCCTTG‑CCATCCTGGACGCATACCTGCATCAGGAAATCGGCGTACGATTTGCTGGCGGTTACCTGCGCCTGCACCATGGCCTGCAAg                                                                             >  1:539617/1‑126 (MQ=255)                                                                                                ctaCAATGGTTTCGTCGTAGTCGAACTGGATAGCCACTGCCTTG‑CCATCCTGGACGCATACCTGCATCAGGAAATCGGCGTACGATTTGCTGGCGCCAGCAAGCTCCTGTACCATGGCCTGCAAGGGGCCGGCGATCATGCGGTCCATCg                                                    <  1:337735/148‑1 (MQ=255)                                                                                                       ctgatgcaggtatgcgtccaGGATGGCAAG‑GCAGTGGCCATCCAGGACGCATACCTGCATCAGGAAATCGGCGTACGATTTGCTGGCGGTTACCTGCGCCTGCACCATGGCCTGCAAGGGGCCGGc                                                                     <  2:59724‑M1/106‑1 (MQ=255)                                                                                                       ctgatgcaggtatgcgtccaGGATGGCAAG‑GCAGTGGCCATCCAGGACGCATACCTGCATCAGGAAATCGGCGTACGATTTGCTGGCGGTTACCTGCGCCTGCACCATGGCCTGCAAGGGGCCGGc                                                                     >  1:59724‑M1/21‑126 (MQ=255)                                                                                                        gTTTCGTCGTAGTCGAACTGGATGGCCACTGCCTTG‑CCATCCTGGACGCATACCTGCATCAGGAAATCGGCGTACGATTTGCTGGCGGTTACCTGCGCCTGCACCATGGCCTGCAAGGGGCCGGCGATCATGCGGTCCATCGGCAGGGCa                                            >  1:559371/1‑150 (MQ=255)                                                                                                         tttCGTCGTAGTCGAACTGGATGGCCACTGCCTTG‑CCATCCTGGACGCATACCTGCATCAGGAAATCGGCGTACGCTTTGCTGGCGGTTACCTGCGCCTGCACCATGGCCTGCAAGGGGCCGGCGATCATGCGGt                                                          <  2:163420/135‑1 (MQ=255)                                                                                                         tttCGTCGTAGTCGAACTGGATGGCCACTGCCTTG‑CCATCCTGGACGCATACCTGCATCAGGAAATCGGCGTACGATTTGCTGGCGGTTACCTGCGCCTGCACCATGGCCTGCAAGGGGCCGGCGATCATGCGGt                                                          >  1:163420/1‑135 (MQ=255)                                                                                                         gatgcaggtatgcgtccaGGATGGCAAG‑GCAGTGGCCATCCTGGACGCATACCTGCATCAGGAAATCGGCGTACGATTTGCTGGCGGTTACCTGCGCCTGCACCATGGCCTGCaa                                                                              >  1:519965‑M1/19‑115 (MQ=255)                                                                                                         gatgcaggtatgcgtccaGGATGGCAAG‑GCAGTGGCCATCCTGGACGCATACCTGCATCAGGAAATCGGCGTACGATTTGCTGGCGGTTACCTGCGCCTGCACCATGGCCTGCaa                                                                              <  2:519965‑M1/97‑1 (MQ=255)                                                                                                             gtcgtAGTCGAACTGGATGGCCACTGCCTTG‑CCATCCTGGACGCATACCTGCATCAGGAAATCGGCGTACGATTTGCTGGCGGTTACCTg                                                                                                   >  2:98156/1‑90 (MQ=255)                                                                                                             gtcgtAGTCGAACTGGATGGCCACTGCCTTG‑CCATCCTGGACGCATACCTGCATCAGGAAATCGGCGTACGATTTGCTGGCGGTTACCTg                                                                                                   <  1:98156/90‑1 (MQ=255)                                                                                                                   gTCGAACTGGATGGCCACTGCCTTG‑CCATCCTGGACGCATACCTGCATCAGGAAATCGGCGTACGATTTGCTGGCGGTTACCTGCGCCTGCAc                                                                                          <  1:750185/93‑1 (MQ=255)                                                                                                                   gTCGAACTGGATGGCCACTGCCTTG‑CCATCCTGGACGCATACCTGCATCAGGAAATCGGCGTACGATTTGCTGGCGGTTACCTGCGCCTGCAc                                                                                          >  2:750185/1‑93 (MQ=255)                                                                                                                           GGATGGCCACTGCCTTG‑CCATCCTGGACGCATACCTGCATCAGGAAATCGGCGTACGATTTGCTGGCGGTTACCTGCGCCTGCACCATGGCCTGCAAGGGGCCGGCGATCATGCGGTCCATCGGCa                                                 <  2:515579‑M1/126‑1 (MQ=255)                                                                                                                           GGATGGCCACTGCCTTG‑CCATCCTGGACGCATACCTGCATCAGGAAATCGGCGTACGATTTGCTGGCGGTTACCTGCGCCTGCACCATGGCCTGCAAGGGGCCGGCGATCATGCGGTCCATCGGCa                                                 >  1:515579‑M1/1‑126 (MQ=255)                                                                                                                               GGCCACTGCCTTG‑CCATCCTGGACGCATACCTGCATCAGGAAATCGGCGTACGATTTGCTGGCGGTTACCTGCGCCTGCACCATGGCCTGCAAGGGGCCGGCGATCATGCGGTCCATCGGCAGGGCATTGATCACGGAGCCTATAAGGCt                     >  2:559371‑M1/1‑150 (MQ=255)                                                                                                                                 CCACTGCCTTG‑CCATCCTGGACGCATACCTGCATCAGGAAATCGGCGTACGATTTGCTGGCGGTTACCTGCGCCTGCACCATGGCCTGCAAGGGGCCGGCGATCATGCGGTCCATCGGCAGGGCATTGATCACGGAGCCTATAAGGCTGt                   <  1:389237‑M1/150‑1 (MQ=255)                                                                                                                                  cACTGCCTTG‑CCATCCTGGACGCATACCTGCATCAGGAAATCGGCGTACGATTTGCTGGCGGTTACCTGCGCCTGCACCATGGCCTGCAAGGGGCCGGCGATCATGc                                                             >  1:707699/1‑107 (MQ=255)                                                                                                                                  cACTGCCTTG‑CCATCCTGGACGCATACCTGCATCAGGAAATCGGCGTACGATTTGCTGGCGGTTACCTGCGCCTGCACCATGGCCTGCAAGGGGCCGGCGATCATGc                                                             <  2:707699/107‑1 (MQ=255)                                                                                                                                  cACTGCCTTG‑CCATCCTGGACGCATACCTGCATCAGGAAACCGGCGTACGATTTGCTGGCGGTTACCTGCGCCTGCACCATGGCCTGCAAGGGGCCCGCGATCATGCGGTCCATCGGCAGGGCATTGATCACGGAGCCTATAAGGCTGtt                  >  1:759958/1‑150 (MQ=255)                                                                                                                                     tGCCTCG‑CCATCCTGGACGCATACCTGCATCAGGAAATCGGCGTACGATTTGCTGGCGGTTACCTGCGCCTGCACCATGGCCTGCAAGGGGCCGGCGATCATGCGGTCCATCGGCAGGGCATTGATCACGGAGCCta                            >  2:107950/1‑137 (MQ=255)                                                                                                                                     tGCCTCG‑CCATCCTGGACGCATACCTGCATCAGGAAATCGGCGTACGATTTGCTGGCGGTTACCTGCGCCTGCACCATGGCCTGCAAGGGGCCGGCGATCATGCGGTCCATCGGCAGGGCATTGATCACGGAGCCta                            <  1:107950/137‑1 (MQ=255)                                                                                                                                        cTTG‑CCATCCTGGACGCATACCTGCATCAGGAAATCGGCGTACGATTTGCTGGCGGTTACCTGCGCCTGCACCATGGCCTGCAAGGGGCCGGCGATCATGCGGTCCATCGGCAGGGCATTGATCACGGAGCCTATAAGGCTGTTATCTaa            >  1:80154/1‑150 (MQ=255)                                                                                                                                             ccatccTGGACGCATACCTGCATCAGGAAATCGGCGTACGATTTGCTGGCGGTTACCTGCGCCTGCACCATGGCCTGCAAGGGGCCGGCGATCATGCGGTCCATCGGCAGGGCATTGATCACGGAGCCTATAAGGCTGt                   <  1:70085‑M2/133‑1 (MQ=255)                                                                                                                                             ccatccTGGACGCATACCTGCATCAGGAAATCGGCGTACGATTTGCTGGCGGTTACCTGCGCCTGCACCATGGCCTGCAAGGGGCCGGCGATCATGCGGTCCATCGGCAGGGCATTGATCACGGAGCCTATAAGGCTGt                   >  2:70085‑M2/7‑139 (MQ=255)                                                                                                                                                   tGGACGCATACCTGCATCAGGAAATCGGCGTACGATTTGCTGGCGGTTACCTGCGCCTGCACCATGGCCTGCAAGGGGCCGGCGATCATGCGGTCCATCGGCAGGGCATTGATCACGGAGCCTATAAGGCTGTTATCTAACGGCATATCg  <  1:61914/150‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                      GCCCTCTTCGATGGAAATGTTCGGGTGGGTAATGGCCGCCATCAGCGGCACTTTCATGGTCTTGCTGACCACGCCTTTGTATTCGCCCTGTTCGTCGACAATGGTTTCGTCGTAGTCGAACTGGATGGCCACTGCCTTG‑CCATCCTGGACGCATACCTGCATCAGGAAATCGGCGTACGATTTGCTGGCGGTTACCTGCGCCTGCACCATGGCCTGCAAGGGGCCGGCGATCATGCGGTCCATCGGCAGGGCATTGATCACGGAGCCTATAAGGCTGTTATCTAACGGCATATCG  >  NC_002947/3295438‑3295732

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.